Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019524

Physical Location & Seq

Genomic Coordinates Reverse (-)

37803980 .. 37806796

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTGAACGGCGTTGAAACCTTGCAACCTTGCAAGCATCAATGCTATGGAGAAACGAAAGTACTTATAGATATCTTTGATGAGATTAGAAAGTTCCATCGGGATTTATGCCGAGCTTACTCTCCAAGAGATCATCTGCCGAAGTTTGTTAGGAGATCTGGTCACCTTCCACCAAGATTACTTCTCCGGAGTCTCCAAGCATTGCACAAGAAGCTACTTTTGGGTGAAGCATTTCAAATTGAAAAGAATGCAGCAGATCGGGTGGAAGATAGATATTGGCATTGTGACGATGAAATTATGACTCTTGTCGGACTATGGTTCGCATGTGTGGCTCGGAAGATGCAAATAGCATTAGAGTTTGGTGGTCTCGATTTCATATCTAGGGTTGGTATTGGGGATCCACATTGTGTTGTTTTCCATCCGCCAGAAACTCGAGGAGTCAATATTGAGCTGGTTGAAAAGCTCCTTTTGGATTTGGAAATTAAGTTTAAAGCTGAAGCAATTCCAATCGAGAACTCTACCGTATGGGTAACACCTGGTAAAACTTTTGATGAATGGATTTGTCCACTTGTCCGCTCACCGATCAGCTTATGCGGTGATGTTATTCCGAGATTATGTCGGGATATTGTGTTGATGAAAGCTGAAGTGGCTGAGCTTTTATTGGCAAGTATTATTGTTAATCTTGTTGGAAAGAAGGATATGGATGTTAATCTCTACAAGTTGATCTCTTTGCAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01524 ko03440 ko04064 ko04068 ko04110 ko04115 ko04210 ko04214 ko04218 ko05165 ko05166 ko05202 ko05206 map01524 map03440 map04064 map04068 map04110 map04115 map04210 map04214 map04218 map05165 map05166 map05202 map05206

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase PWWP

Protein Analysis

246

Amino Acids

28.11

Weight (kDa)

6.71

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019524)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_2G00108500 Rroxscaffold_2G00125310 Rroxscaffold_4G00300170 Rroxscaffold_4G00304110 Rroxscaffold_5G00363650 Rroxscaffold_6G00415650 Rroxscaffold_7G00200980 Rroxscaffold_7G00217700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	724
Acc36I	ACCTGC	1 cut(s)	724
AccBSI	CCGCTC	1 cut(s)	576
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	3 cut(s)	422, 574, 594
AclWI	GGATC	2 cut(s)	392, 405
AcuI	CTGAAG	2 cut(s)	516, 663
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	63
AgsI	TTSAA	5 cut(s)	7, 17, 236, 242, 458
AjnI	CCWGG	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	8 cut(s)	116, 214, 451, 463, 494, 588, 641, 655
AluI	AGCT	8 cut(s)	116, 214, 451, 463, 494, 588, 641, 655
Alw26I	GTCTC	2 cut(s)	197, 371
AlwI	GGATC	2 cut(s)	392, 405
Ama87I	CYCGRG	1 cut(s)	432
Aor13HI	TCCGGA	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	251
Asp700I	GAANNNNTTC	2 cut(s)	231, 501
AsuHPI	GGTGA	4 cut(s)	155, 236, 570, 608
AvaI	CYCGRG	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	105, 426
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	537
BcoDI	GTCTC	2 cut(s)	197, 371
BfaI	CTAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	724
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	1 cut(s)	252
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	1 cut(s)	253
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	537
BmeT110I	CYCGRG	1 cut(s)	432
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	46, 330
BoxI	GACNNNNGTC	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	651
BsaBI	GATNNNNATC	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	371
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse3DI	GCAATG	1 cut(s)	200
Bse8I	GATNNNNATC	1 cut(s)	708
BseAI	TCCGGA	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	537
BseGI	GGATG	2 cut(s)	418, 709
BseJI	GATNNNNATC	1 cut(s)	708
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	642
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	197, 371
BsmI	GAATGC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	432
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	6 cut(s)	130, 155, 256, 397, 582, 723
Bsp1720I	GCTNAGC	1 cut(s)	651
BspACI	CCGC	3 cut(s)	422, 574, 594
BspCNI	CTCAG	1 cut(s)	643
BspEI	TCCGGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	2 cut(s)	392, 405
BspTNI	GGTCTC	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	200
BssMI	GATC	6 cut(s)	130, 155, 256, 397, 582, 723
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	651
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	418, 709
BstKTI	GATC	6 cut(s)	133, 158, 259, 400, 585, 726
BstMAI	GTCTC	2 cut(s)	197, 371
BstMBI	GATC	6 cut(s)	130, 155, 256, 397, 582, 723
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 329, 647
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	327
BstPAI	GACNNNNGTC	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	535
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	2 cut(s)	155, 397
BstYI	RGATCY	2 cut(s)	155, 397
BtsCI	GGATG	2 cut(s)	418, 709
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	1 cut(s)	35
CsiI	ACCWGGT	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	1 cut(s)	324
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	651
DpnI	GATC	6 cut(s)	132, 157, 258, 399, 584, 725
DpnII	GATC	6 cut(s)	130, 155, 256, 397, 582, 723
DraI	TTTAAA	1 cut(s)	490
DraIII	CACNNNGTG	1 cut(s)	407
EciI	GGCGGA	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	371
Eco32I	GATATC	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	516, 663
Eco88I	CYCGRG	1 cut(s)	432
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	535
EcoRV	GATATC	1 cut(s)	73
FaeI	CATG	1 cut(s)	327
FatI	CATG	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	2 cut(s)	405, 716
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	1 cut(s)	252
HapII	CCGG	1 cut(s)	187
Hin1II	CATG	1 cut(s)	327
HinfI	GANTC	3 cut(s)	190, 301, 438
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	4 cut(s)	155, 236, 570, 608
Hpy166II	GTNNAC	1 cut(s)	566
Hpy188I	TCNGA	3 cut(s)	311, 336, 609
Hpy188III	TCNNGA	5 cut(s)	101, 187, 368, 511, 620
Hpy8I	GTNNAC	1 cut(s)	566
HpyAV	CCTTC	2 cut(s)	176, 688
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4V	TGCA	6 cut(s)	25, 33, 205, 251, 343, 733
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 329, 647
HpyF3I	CTNAG	1 cut(s)	651
Hsp92II	CATG	1 cut(s)	327
Kpn2I	TCCGGA	1 cut(s)	186
Kzo9I	GATC	6 cut(s)	130, 155, 256, 397, 582, 723
LmnI	GCTCC	1 cut(s)	468
LpnPI	CCDG	7 cut(s)	144, 200, 437, 438, 522, 549, 719
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	2 cut(s)	46, 330
MabI	ACCWGGT	1 cut(s)	535
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	3 cut(s)	161, 284, 529
MalI	GATC	6 cut(s)	132, 157, 258, 399, 584, 725
MbiI	CCGCTC	1 cut(s)	576
MboI	GATC	6 cut(s)	130, 155, 256, 397, 582, 723
MboII	GAAGA	2 cut(s)	278, 349
MflI	RGATCY	2 cut(s)	155, 397
MluCI	AATT	4 cut(s)	237, 294, 480, 501
MlyI	GAGTC	3 cut(s)	199, 295, 447
MmeI	TCCRAC	2 cut(s)	289, 667
MnlI	CCTC	1 cut(s)	428
MroI	TCCGGA	1 cut(s)	186
MroXI	GAANNNNTTC	2 cut(s)	231, 501
MseI	TTAA	4 cut(s)	483, 489, 678, 708
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	3 cut(s)	211, 329, 647
NdeII	GATC	6 cut(s)	130, 155, 256, 397, 582, 723
NlaIII	CATG	1 cut(s)	327
NlaIV	GGNNCC	1 cut(s)	399
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	161, 284
NspI	RCATGY	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	432
PaqCI	CACCTGC	1 cut(s)	724
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	231, 501
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	3 cut(s)	198, 295, 446
PpsI	GAGTC	3 cut(s)	198, 295, 446
PshAI	GACNNNNGTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	535
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	399
PspXI	VCTCGAGB	1 cut(s)	432
PsuI	RGATCY	2 cut(s)	155, 397
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SaqAI	TTAA	4 cut(s)	483, 489, 678, 708
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	6 cut(s)	130, 155, 256, 397, 582, 723
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	3 cut(s)	199, 295, 447
ScrFI	CCNGG	1 cut(s)	537
SexAI	ACCWGGT	1 cut(s)	535
SfaNI	GCATC	2 cut(s)	46, 330
Sfr274I	CTCGAG	1 cut(s)	432
SlaI	CTCGAG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	4 cut(s)	237, 294, 480, 501
SsiI	CCGC	3 cut(s)	422, 574, 594
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	535
TaaI	ACNGT	1 cut(s)	523
TaqI	TCGA	3 cut(s)	369, 433, 510
TasI	AATT	4 cut(s)	237, 294, 480, 501
TatI	WGTACW	1 cut(s)	61
Tru1I	TTAA	4 cut(s)	483, 489, 678, 708
Tru9I	TTAA	4 cut(s)	483, 489, 678, 708
TseFI	GTSAC	2 cut(s)	161, 284
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	2 cut(s)	161, 284
TspDTI	ATGAA	4 cut(s)	306, 364, 567, 650
XceI	RCATGY	1 cut(s)	327
XhoI	CTCGAG	1 cut(s)	432
XmnI	GAANNNNTTC	2 cut(s)	231, 501
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.