Rroxscaffold_4G00300170
MYB Family

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0019524
Physical Location & Seq
Reverse (-)
20331744 .. 20336599
4856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300170.1

Sequence Viewer

Length: 660 bp
ATGATCGTGGGTATTCCGAAGCCCCGTTATGACTCAAGGCGGAGCTACTCTAGAAGTCCCAATCGTAATATATGTCGAGAAGTCGCGATCGCAGGTCGCTTTGGGGGCCGGAAGCGAGAAGCATATCACCGGATGTGGATTATTCACATCGCTTTCCTAGGTACGCCTCACCTTCCCCTTCAAGAAATGTTGGATAGAGTGGCAAAACATTTTACGGGGCTAAAAGACTTCGGGATCACCCAACGATGCGCCAAGAACTTCGGGATAGATGATCATGTTGGCTCGGCTTACAATCGCGAGAGAGAGGCAAAGATAGGAGAAGCAGCTAGGGACATTGTCCGAATCGGAGCGTGTTCATTCTCATTCCCGGCCGGTGACATGTCCAAAAGCAGCCCGGCATGGAGGACCACATTGAAGTTGGTGTCGGGTCAAATATCAAGCTCATGTACCGAATGGACTGGTGAGTCTTCCGAAAGTGACTCAAAGTGGTTGGAGACAAGGAAGTGGCCAATTGAAAACCCGAGCATCCAGGGACCCTTAATGCGAGAATGTCTAGATGGTGGATATGGATCATGGTGGACATTGGGCTTTTCCCAACGAGACTGGCTAAGATACCAGATTTGGAATCTGGCAAAGGCACCAGATTTTTGGGGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID Myb_DNA-binding

Protein Analysis

219

Amino Acids

25.0

Weight (kDa)

9.51

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 463
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 1 cut(s) 637
AccII CGCG 2 cut(s) 86, 297
AciI CCGC 1 cut(s) 40
AclWI GGATC 2 cut(s) 242, 577
AcoI YGGCCR 2 cut(s) 369, 506
AfaI GTAC 2 cut(s) 163, 448
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 3 cut(s) 182, 415, 515
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 3 cut(s) 45, 326, 441
AluI AGCT 3 cut(s) 45, 326, 441
Alw26I GTCTC 2 cut(s) 488, 594
AlwI GGATC 2 cut(s) 242, 577
Ama87I CYCGRG 1 cut(s) 520
AoxI GGCC 3 cut(s) 106, 369, 506
ApeKI GCWGC 2 cut(s) 323, 390
AsiSI GCGATCGC 1 cut(s) 90
AspA2I CCTAGG 1 cut(s) 157
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 3 cut(s) 106, 405, 533
AsuC2I CCSGG 2 cut(s) 368, 395
AsuHPI GGTGA 5 cut(s) 119, 161, 229, 386, 473
AvaI CYCGRG 1 cut(s) 520
AvaII GGWCC 2 cut(s) 405, 533
AvrII CCTAGG 1 cut(s) 157
BalI TGGCCA 1 cut(s) 508
BanI GGYRCC 1 cut(s) 637
BbsI GAAGAC 1 cut(s) 459
BbvI GCAGC 2 cut(s) 335, 402
BccI CCATC 1 cut(s) 551
BciT130I CCWGG 1 cut(s) 530
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 2 cut(s) 368, 395
BcoDI GTCTC 2 cut(s) 488, 594
BfaI CTAG 4 cut(s) 51, 158, 327, 554
BfuAI ACCTGC 1 cut(s) 83
BisI GCNGC 2 cut(s) 324, 391
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 2 cut(s) 325, 392
Bme1390I CCNGG 3 cut(s) 368, 395, 530
Bme18I GGWCC 2 cut(s) 405, 533
BmeT110I CYCGRG 1 cut(s) 520
BmgT120I GGNCC 3 cut(s) 106, 405, 533
BmiI GGNNCC 4 cut(s) 107, 534, 535, 639
BmrFI CCNGG 3 cut(s) 368, 395, 530
BmsI GCATC 2 cut(s) 236, 534
BpiI GAAGAC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 19
BpuMI CCSGG 2 cut(s) 368, 395
BsaBI GATNNNNATC 1 cut(s) 568
BsaJI CCNNGG 2 cut(s) 157, 529
BsaWI WCCGGW 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 463, 608
Bse8I GATNNNNATC 1 cut(s) 568
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 2 cut(s) 157, 529
BseGI GGATG 2 cut(s) 138, 525
BseJI GATNNNNATC 1 cut(s) 568
BseNI ACTGG 2 cut(s) 463, 608
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 2 cut(s) 335, 402
Bsh1236I CGCG 2 cut(s) 86, 297
Bsh1285I CGRYCG 2 cut(s) 90, 372
BshFI GGCC 3 cut(s) 108, 371, 508
BshNI GGYRCC 1 cut(s) 637
BsiEI CGRYCG 2 cut(s) 90, 372
BsiHKCI CYCGRG 1 cut(s) 520
BsiSI CCGG 5 cut(s) 109, 130, 368, 372, 395
BslFI GGGAC 3 cut(s) 42, 344, 546
BsmAI GTCTC 2 cut(s) 488, 594
BsmFI GGGAC 3 cut(s) 42, 344, 546
BsnI GGCC 3 cut(s) 108, 371, 508
BsoBI CYCGRG 1 cut(s) 520
Bsp143I GATC 5 cut(s) 3, 87, 234, 271, 569
Bsp68I TCGCGA 2 cut(s) 86, 297
BspACI CCGC 1 cut(s) 40
BspANI GGCC 3 cut(s) 108, 371, 508
BspFNI CGCG 2 cut(s) 86, 297
BspLI GGNNCC 4 cut(s) 107, 534, 535, 639
BspMI ACCTGC 1 cut(s) 83
BspPI GGATC 2 cut(s) 242, 577
BspT107I GGYRCC 1 cut(s) 637
BsrFI RCCGGY 1 cut(s) 371
BsrI ACTGG 2 cut(s) 463, 608
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 157, 529
BssMI GATC 5 cut(s) 3, 87, 234, 271, 569
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 530
BstDEI CTNAG 1 cut(s) 608
BstF5I GGATG 2 cut(s) 138, 525
BstFNI CGCG 2 cut(s) 86, 297
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 5 cut(s) 6, 90, 237, 274, 572
BstMAI GTCTC 2 cut(s) 488, 594
BstMBI GATC 5 cut(s) 3, 87, 234, 271, 569
BstMCI CGRYCG 2 cut(s) 90, 372
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 530
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 3 cut(s) 366, 393, 528
BstUI CGCG 2 cut(s) 86, 297
BstV1I GCAGC 2 cut(s) 335, 402
BstV2I GAAGAC 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 648
BstZI CGGCCG 1 cut(s) 369
BsuRI GGCC 3 cut(s) 108, 371, 508
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 2 cut(s) 138, 525
BtuMI TCGCGA 2 cut(s) 86, 297
BveI ACCTGC 1 cut(s) 83
CfoI GCGC 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 3 cut(s) 106, 405, 533
Csp6I GTAC 2 cut(s) 162, 447
CviAII CATG 5 cut(s) 275, 379, 399, 444, 573
CviQI GTAC 2 cut(s) 162, 447
DdeI CTNAG 1 cut(s) 608
DpnI GATC 5 cut(s) 5, 89, 236, 273, 571
DpnII GATC 5 cut(s) 3, 87, 234, 271, 569
DrdI GACNNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 463
EaeI YGGCCR 2 cut(s) 369, 506
EagI CGGCCG 1 cut(s) 369
EciI GGCGGA 1 cut(s) 55
EclXI CGGCCG 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 405, 533
Eco52I CGGCCG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 520
EcoO109I RGGNCCY 1 cut(s) 533
EcoRII CCWGG 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 5 cut(s) 278, 382, 402, 447, 576
FaqI GGGAC 3 cut(s) 42, 344, 546
FatI CATG 5 cut(s) 274, 378, 398, 443, 572
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 324, 391
FokI GGATG 2 cut(s) 145, 512
Fsp4HI GCNGC 2 cut(s) 324, 391
FspBI CTAG 4 cut(s) 51, 158, 327, 554
GlaI GCGC 1 cut(s) 250
GluI GCNGC 2 cut(s) 324, 391
HaeIII GGCC 3 cut(s) 108, 371, 508
HapII CCGG 5 cut(s) 109, 130, 368, 372, 395
HhaI GCGC 1 cut(s) 251
Hin1II CATG 5 cut(s) 278, 382, 402, 447, 576
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HinfI GANTC 5 cut(s) 32, 342, 464, 479, 625
HpaII CCGG 5 cut(s) 109, 130, 368, 372, 395
HphI GGTGA 5 cut(s) 119, 161, 229, 386, 473
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 4 cut(s) 18, 341, 347, 472
Hpy188III TCNNGA 8 cut(s) 51, 77, 85, 182, 232, 262, 296, 554
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 2 cut(s) 182, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 1 cut(s) 608
Hsp92II CATG 5 cut(s) 278, 382, 402, 447, 576
HspAI GCGC 1 cut(s) 249
KflI GGGWCCC 1 cut(s) 533
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 5 cut(s) 3, 87, 234, 271, 569
LmnI GCTCC 2 cut(s) 42, 347
Lsp1109I GCAGC 2 cut(s) 335, 402
LweI GCATC 2 cut(s) 236, 534
MaeI CTAG 4 cut(s) 51, 158, 327, 554
MaeIII GTNAC 2 cut(s) 374, 476
MalI GATC 5 cut(s) 5, 89, 236, 273, 571
MboI GATC 5 cut(s) 3, 87, 234, 271, 569
MboII GAAGA 1 cut(s) 459
MfeI CAATTG 1 cut(s) 510
MlsI TGGCCA 1 cut(s) 508
MluCI AATT 1 cut(s) 510
MluNI TGGCCA 1 cut(s) 508
MlyI GAGTC 3 cut(s) 26, 473, 473
MmeI TCCRAC 2 cut(s) 171, 471
MnlI CCTC 3 cut(s) 177, 298, 396
Mox20I TGGCCA 1 cut(s) 508
MscI TGGCCA 1 cut(s) 508
MseI TTAA 1 cut(s) 539
Msp20I TGGCCA 1 cut(s) 508
MspI CCGG 5 cut(s) 109, 130, 368, 372, 395
MspR9I CCNGG 3 cut(s) 368, 395, 530
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 530
MvnI CGCG 2 cut(s) 86, 297
MwoI GCNNNNNNNGC 1 cut(s) 105
NciI CCSGG 2 cut(s) 368, 395
NdeII GATC 5 cut(s) 3, 87, 234, 271, 569
NlaIII CATG 5 cut(s) 278, 382, 402, 447, 576
NlaIV GGNNCC 4 cut(s) 107, 534, 535, 639
NmeAIII GCCGAG 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 374, 476
NruI TCGCGA 2 cut(s) 86, 297
NspI RCATGY 1 cut(s) 382
PciI ACATGT 1 cut(s) 378
PfeI GAWTC 2 cut(s) 342, 625
PflFI GACNNNGTC 1 cut(s) 335
PkrI GCNGC 2 cut(s) 325, 392
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 3 cut(s) 26, 472, 473
PpsI GAGTC 3 cut(s) 26, 472, 473
PpuMI RGGWCCY 1 cut(s) 533
PscI ACATGT 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 533
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 4 cut(s) 107, 534, 535, 639
PspPI GGNCC 3 cut(s) 106, 405, 533
PspPPI RGGWCCY 1 cut(s) 533
PsyI GACNNNGTC 1 cut(s) 335
PvuI CGATCG 1 cut(s) 90
RgaI GCGATCGC 1 cut(s) 90
RruI TCGCGA 2 cut(s) 86, 297
RsaI GTAC 2 cut(s) 163, 448
RsaNI GTAC 2 cut(s) 162, 447
SaqAI TTAA 1 cut(s) 539
SatI GCNGC 2 cut(s) 324, 391
Sau3AI GATC 5 cut(s) 3, 87, 234, 271, 569
Sau96I GGNCC 3 cut(s) 106, 405, 533
SchI GAGTC 3 cut(s) 26, 473, 473
ScrFI CCNGG 3 cut(s) 368, 395, 530
SetI ASST 6 cut(s) 47, 97, 163, 174, 328, 443
SfaAI GCGATCGC 1 cut(s) 90
SfaNI GCATC 2 cut(s) 236, 534
SgfI GCGATCGC 1 cut(s) 90
SinI GGWCC 2 cut(s) 405, 533
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 1 cut(s) 510
SsiI CCGC 1 cut(s) 40
SspMI CTAG 4 cut(s) 51, 158, 327, 554
StyD4I CCNGG 3 cut(s) 366, 393, 528
StyI CCWWGG 1 cut(s) 157
TaqI TCGA 1 cut(s) 76
TasI AATT 1 cut(s) 510
TfiI GAWTC 2 cut(s) 342, 625
Tru1I TTAA 1 cut(s) 539
Tru9I TTAA 1 cut(s) 539
TseFI GTSAC 2 cut(s) 374, 476
TseI GCWGC 2 cut(s) 323, 390
Tsp45I GTSAC 2 cut(s) 374, 476
TspDTI ATGAA 1 cut(s) 345
Tth111I GACNNNGTC 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 405, 533
XbaI TCTAGA 2 cut(s) 50, 553
XceI RCATGY 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmaJI CCTAGG 1 cut(s) 157
XspI CTAG 4 cut(s) 51, 158, 327, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.