Rroxscaffold_2G00108500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019524
Physical Location & Seq
Reverse (-)
32501486 .. 32519208
17723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108500.1

Sequence Viewer

Length: 324 bp
ATGGACCATTCTTGCGGGAATGACTGCACCTCAAGCAACCGGGGTCATCCACTCGACTTTGAGAAAGGTTTCATTCGAGCCGAGACAGTGTCTTATGATGATTTTGTTGCTGTTTGGTTCACTTGCTGCAGCAAGGGAAAGAGGAGTTGTGATCAATGGTTTGACACGGTGGACATGGATCATGGTGGACATTGGGCATTTCCCAACGAGCAAAAAGAGGCTCTAGAATTATGTCGGACACTTGGTCTTGAAAATAAAATTGGCGCCTTTTGCTCCCAACCACCGAAGCGGGCTGCTTTCATAAACATATGCTCACGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.1

Weight (kDa)

5.48

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AciI CCGC 2 cut(s) 15, 289
AclWI GGATC 1 cut(s) 186
AcvI CACGTG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 264
AgsI TTSAA 1 cut(s) 251
AhdI GACNNNNNGTC 1 cut(s) 243
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 186
ApeKI GCWGC 3 cut(s) 126, 129, 293
Asp700I GAANNNNTTC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 263
BbrPI CACGTG 1 cut(s) 317
BbvI GCAGC 3 cut(s) 113, 141, 280
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 267
BisI GCNGC 3 cut(s) 127, 130, 294
BlsI GCNGC 3 cut(s) 128, 131, 295
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 4
BmeRI GACNNNNNGTC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 41
BsaAI YACGTR 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 157
BseXI GCAGC 3 cut(s) 113, 141, 280
BsgI GTGCAG 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 151, 178
BspACI CCGC 2 cut(s) 15, 289
BspLI GGNNCC 1 cut(s) 265
BspMAI CTGCAG 1 cut(s) 131
BspPI GGATC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 2 cut(s) 151, 178
BssNI GRCGYC 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 88, 169
BstACI GRCGYC 1 cut(s) 264
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 291
BstF5I GGATG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 2 cut(s) 154, 181
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 151, 178
BstMWI GCNNNNNNNGC 2 cut(s) 33, 270
BstSCI CCNGG 1 cut(s) 39
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 3 cut(s) 113, 141, 280
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 2 cut(s) 175, 182
CviJI RGCY 3 cut(s) 80, 221, 293
CviKI_1 RGCY 3 cut(s) 80, 221, 293
DinI GGCGCC 1 cut(s) 265
DpnI GATC 2 cut(s) 153, 180
DpnII GATC 2 cut(s) 151, 178
DriI GACNNNNNGTC 1 cut(s) 243
Eam1105I GACNNNNNGTC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 4
Eco72I CACGTG 1 cut(s) 317
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
FaeI CATG 2 cut(s) 178, 185
FaiI YATR 7 cut(s) 96, 176, 183, 232, 302, 308, 310
FatI CATG 2 cut(s) 174, 181
FauI CCCGC 2 cut(s) 8, 282
FauNDI CATATG 1 cut(s) 308
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 127, 130, 294
FokI GGATG 1 cut(s) 33
Fsp4HI GCNGC 3 cut(s) 127, 130, 294
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 265
GluI GCNGC 3 cut(s) 127, 130, 294
HaeII RGCGCY 1 cut(s) 267
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 2 cut(s) 178, 185
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HpaII CCGG 1 cut(s) 40
Hpy166II GTNNAC 3 cut(s) 120, 172, 188
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 224, 248
Hpy8I GTNNAC 3 cut(s) 120, 172, 188
HpyCH4III ACNGT 2 cut(s) 88, 169
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 2 cut(s) 27, 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 270
HpySE526I ACGT 1 cut(s) 316
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 2 cut(s) 178, 185
HspAI GCGC 1 cut(s) 264
KasI GGCGCC 1 cut(s) 263
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 151, 178
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 1 cut(s) 53
Lsp1109I GCAGC 3 cut(s) 113, 141, 280
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 317
MalI GATC 2 cut(s) 153, 180
MboI GATC 2 cut(s) 151, 178
MluCI AATT 2 cut(s) 227, 258
Mly113I GGCGCC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 3 cut(s) 40, 135, 211
MroXI GAANNNNTTC 1 cut(s) 68
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 33, 270
NarI GGCGCC 1 cut(s) 264
NciI CCSGG 1 cut(s) 41
NdeI CATATG 1 cut(s) 308
NdeII GATC 2 cut(s) 151, 178
NlaIII CATG 2 cut(s) 178, 185
NlaIV GGNNCC 1 cut(s) 265
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 68
PflFI GACNNNGTC 1 cut(s) 88
PkrI GCNGC 3 cut(s) 128, 131, 295
PluTI GGCGCC 1 cut(s) 267
PmaCI CACGTG 1 cut(s) 317
PmlI CACGTG 1 cut(s) 317
Ppu21I YACGTR 1 cut(s) 317
PspCI CACGTG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 131
PsyI GACNNNGTC 1 cut(s) 88
SatI GCNGC 3 cut(s) 127, 130, 294
Sau3AI GATC 2 cut(s) 151, 178
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 41
SetI ASST 3 cut(s) 32, 70, 319
SfcI CTRYAG 1 cut(s) 127
SfoI GGCGCC 1 cut(s) 265
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 2 cut(s) 227, 258
SsiI CCGC 2 cut(s) 15, 289
SspDI GGCGCC 1 cut(s) 263
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 88, 169
TaiI ACGT 1 cut(s) 319
TaqI TCGA 2 cut(s) 54, 76
TasI AATT 2 cut(s) 227, 258
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 3 cut(s) 126, 129, 293
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 61, 289
TspRI CASTG 1 cut(s) 93
Tth111I GACNNNGTC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 4
XbaI TCTAGA 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.