Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0019524

Physical Location & Seq

Genomic Coordinates Forward (+)

44936941 .. 44948506

Gene Structure 11566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCTACGTGGTTTGTGTGGGTGCTGATCGTACTTTTCTGCATTGGCGGTATTCGGGGAATGCATAATGTTATCTCAAGCCCGATTTTGAGAACATGGAAAAGCGGTGGACGGAAGGGAATACATGTGCCTATTTTTGAAGAGCGTCATGATTGCGGTGATCAATGGTTTGACACGGTGGACATGGATCATGGTGGACATTGGGCATTTCCCAACGAGATAATGATAATGGAAAGCGATAGTAAACGATTACCTCTTTGGGTCGTTGGAGATATTCCTAATGTAGCAGATTTGTGGGAGCTTGGTCTTGTTTCTTTTGTTGTGGGACGTTTGTGGTTCCCGATATCTACCCAACGGTCCTTGGCTTTGAAACTGCAGAGATGGATCATCTGCGTTGGTCTCGTTCAGAAGGGTACGTCTGTGGCTCCTGGGGGACCTCATATGATCAGTCATGATCATGTTCTTGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

157

Amino Acids

17.71

Weight (kDa)

6.69

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019524)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_2G00108500 Rroxscaffold_2G00125310 Rroxscaffold_4G00300170 Rroxscaffold_4G00304110 Rroxscaffold_5G00363650 Rroxscaffold_6G00415650 Rroxscaffold_7G00200980 Rroxscaffold_7G00217700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	48, 105, 156
AclWI	GGATC	2 cut(s)	195, 392
AfaI	GTAC	2 cut(s)	33, 415
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	140, 370
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	2 cut(s)	195, 392
AspS9I	GGNCC	2 cut(s)	357, 434
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	357, 434
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BccI	CCATC	1 cut(s)	375
BciT130I	CCWGG	1 cut(s)	429
BclI	TGATCA	3 cut(s)	160, 444, 454
BcoDI	GTCTC	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	2 cut(s)	357, 434
BmgT120I	GGNCC	2 cut(s)	357, 434
BmiI	GGNNCC	3 cut(s)	338, 426, 435
BmrFI	CCNGG	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	61
BsaAI	YACGTR	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	360, 428
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	360, 428
BslFI	GGGAC	2 cut(s)	339, 447
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	2 cut(s)	339, 447
BsmI	GAATGC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	404
Bsp143I	GATC	6 cut(s)	27, 160, 187, 384, 444, 454
BspACI	CCGC	3 cut(s)	48, 105, 156
BspHI	TCATGA	2 cut(s)	148, 451
BspLI	GGNNCC	3 cut(s)	338, 426, 435
BspMAI	CTGCAG	1 cut(s)	378
BspPI	GGATC	2 cut(s)	195, 392
BspQI	GCTCTTC	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	360, 428
BssMI	GATC	6 cut(s)	27, 160, 187, 384, 444, 454
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	178, 357
Bst6I	CTCTTC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	9
BstKTI	GATC	6 cut(s)	30, 163, 190, 387, 447, 457
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	6 cut(s)	27, 160, 187, 384, 444, 454
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	1 cut(s)	374
CciI	TCATGA	2 cut(s)	148, 451
Cfr13I	GGNCC	2 cut(s)	357, 434
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	32, 414
CviAII	CATG	7 cut(s)	96, 125, 149, 184, 191, 452, 458
CviJI	RGCY	4 cut(s)	81, 301, 365, 425
CviKI_1	RGCY	4 cut(s)	81, 301, 365, 425
CviQI	GTAC	2 cut(s)	32, 414
DpnI	GATC	6 cut(s)	29, 162, 189, 386, 446, 456
DpnII	GATC	6 cut(s)	27, 160, 187, 384, 444, 454
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	357, 434
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	427
EcoRV	GATATC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	7 cut(s)	99, 128, 152, 187, 194, 455, 461
FaqI	GGGAC	2 cut(s)	339, 447
FatI	CATG	7 cut(s)	95, 124, 148, 183, 190, 451, 457
FauNDI	CATATG	1 cut(s)	441
FbaI	TGATCA	3 cut(s)	160, 444, 454
FblI	GTMKAC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	7 cut(s)	99, 128, 152, 187, 194, 455, 461
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	5 cut(s)	6, 110, 181, 197, 245
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	149, 340, 452
Hpy8I	GTNNAC	5 cut(s)	6, 110, 181, 197, 245
HpyAV	CCTTC	2 cut(s)	109, 403
HpyCH4III	ACNGT	2 cut(s)	178, 357
HpyCH4IV	ACGT	3 cut(s)	8, 328, 416
HpyCH4V	TGCA	3 cut(s)	42, 64, 376
HpySE526I	ACGT	3 cut(s)	8, 328, 416
Hsp92II	CATG	7 cut(s)	99, 128, 152, 187, 194, 455, 461
Ksp22I	TGATCA	3 cut(s)	160, 444, 454
Kzo9I	GATC	6 cut(s)	27, 160, 187, 384, 444, 454
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	2 cut(s)	298, 430
LpnPI	CCDG	2 cut(s)	414, 441
MaeII	ACGT	3 cut(s)	8, 328, 416
MalI	GATC	6 cut(s)	29, 162, 189, 386, 446, 456
MboI	GATC	6 cut(s)	27, 160, 187, 384, 444, 454
MboII	GAAGA	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	2 cut(s)	264, 447
Mph1103I	ATGCAT	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	429
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	6 cut(s)	27, 160, 187, 384, 444, 454
NlaIII	CATG	7 cut(s)	99, 128, 152, 187, 194, 455, 461
NlaIV	GGNNCC	3 cut(s)	338, 426, 435
NsiI	ATGCAT	1 cut(s)	66
NspI	RCATGY	1 cut(s)	128
PagI	TCATGA	2 cut(s)	148, 451
PciI	ACATGT	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	135
PctI	GAATGC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	9
PpuMI	RGGWCCY	1 cut(s)	434
PscI	ACATGT	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	3 cut(s)	338, 426, 435
PspPI	GGNCC	2 cut(s)	357, 434
PspPPI	RGGWCCY	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	378
RsaI	GTAC	2 cut(s)	33, 415
RsaNI	GTAC	2 cut(s)	32, 414
RseI	CAYNNNNRTG	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	135
Sau3AI	GATC	6 cut(s)	27, 160, 187, 384, 444, 454
Sau96I	GGNCC	2 cut(s)	357, 434
ScrFI	CCNGG	1 cut(s)	429
SetI	ASST	6 cut(s)	11, 256, 303, 331, 419, 439
SfcI	CTRYAG	1 cut(s)	374
SinI	GGWCC	2 cut(s)	357, 434
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SsiI	CCGC	3 cut(s)	48, 105, 156
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	2 cut(s)	178, 357
TaiI	ACGT	3 cut(s)	11, 331, 419
TspGWI	ACGGA	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	357, 434
XceI	RCATGY	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.