Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0017654

Physical Location & Seq

Genomic Coordinates Forward (+)

2430165 .. 2431255

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1034600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 135 bp

ATGGAACACATGAGCCCTAAAAAGACTAATGGTCTCCCTAGCTTTGCACATGACCTCCAAATCTTGGTGGTAGATCATGATACATTGTCCCTCATGTCCACAGCGGCAACTCATGTCCTCAGAAGTGAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

45

Amino Acids

4.92

Weight (kDa)

5.98

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017654)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26570
malus_domestica	MD13G1034600.v1.1 MD16G1036100.v1.1
prunus_persica	Prupe.1G317900_v2.0.a1
rosa_laevigata	RLG00000006691
rosa_multiflora	Rmu_sc0000459.1_g000011
rosa_roxburghii	Rroxscaffold_5G00375600
rosa_samantha	Rh4AG330200 Rh4BG337800 Rh4CG353200 Rh4DG333800
rosa_wichuraiana	Rw4G028640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	64
AciI	CCGC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	64
AhdI	GACNNNNNGTC	1 cut(s)	30
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmeRI	GACNNNNNGTC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	38
BssMI	GATC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	119
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	73
CciI	TCATGA	1 cut(s)	76
CviAII	CATG	5 cut(s)	10, 50, 77, 94, 113
CviJI	RGCY	2 cut(s)	15, 42
CviKI_1	RGCY	2 cut(s)	15, 42
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DriI	GACNNNNNGTC	1 cut(s)	30
Eam1105I	GACNNNNNGTC	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	5 cut(s)	13, 53, 80, 97, 116
FaiI	YATR	5 cut(s)	11, 51, 78, 95, 114
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	5 cut(s)	9, 49, 76, 93, 112
Fnu4HI	GCNGC	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	1 cut(s)	105
Hin1II	CATG	5 cut(s)	13, 53, 80, 97, 116
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	5 cut(s)	13, 53, 80, 97, 116
Kzo9I	GATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	17
MnlI	CCTC	3 cut(s)	65, 101, 128
MseI	TTAA	1 cut(s)	133
MspA1I	CMGCKG	1 cut(s)	104
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	5 cut(s)	13, 53, 80, 97, 116
PagI	TCATGA	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	133
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	2 cut(s)	44, 57
SgeI	CNNG	7 cut(s)	22, 51, 62, 76, 89, 106, 125
SsiI	CCGC	1 cut(s)	104
SspI	AATATT	1 cut(s)	131
SspMI	CTAG	1 cut(s)	39
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	133
Tru9I	TTAA	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	64
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.