Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0020816

Physical Location & Seq

Genomic Coordinates Forward (+)

3169999 .. 3170325

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG046600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGCACGATTATCGTCCTTTTAACTCTTTTCCAATGAAGATGCAGTATGTACTGTACTATTTATCGGAGACTGCTTGGCTTCAAGTAGAAGCTAGATTTTCCAGACAGTCAAAACTACTCATCAGTCATGACCAACCTCCTAGATCTGGACCGGTGCCTGTACCACAATTCCTTGAGATGAACGAAGGAGCACGGGAAATCCTGTTACTGTTAAAGTCAATATTAGCTGCCGACAGTGCACTTGGTGGCCAAGGTGGTGGTATTGGTAGTAGTGTAGTACTACCACCCACGTGGGCAGGAGGTTGGTTCATTTGGTTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

108

Amino Acids

12.02

Weight (kDa)

6.71

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020816)

Species	Orthologous Gene IDs
rosa_samantha	Rh3DG297200 Rh7AG046500 Rh7BG045400 Rh7BG045500 Rh7BG045900 Rh7CG046600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	250
AcvI	CACGTG	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	4 cut(s)	54, 59, 165, 282
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgeI	ACCGGT	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	86
AleI	CACNNNNGTG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	95, 230
AluI	AGCT	2 cut(s)	95, 230
Alw21I	GWGCWC	2 cut(s)	196, 244
Alw26I	GTCTC	1 cut(s)	65
Alw44I	GTGCAC	1 cut(s)	240
AoxI	GGCC	1 cut(s)	250
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	230
AsiGI	ACCGGT	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	157
BbrPI	CACGTG	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	196, 244
BbvI	GCAGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	96, 144
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	157
BshTI	ACCGGT	1 cut(s)	154
BsiHKAI	GWGCWC	2 cut(s)	196, 244
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	196, 244
Bsp143I	GATC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	253
Bst4CI	ACNGT	4 cut(s)	57, 111, 213, 239
BstBAI	YACGTR	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	146
BstXI	CCANNNNNNTGG	2 cut(s)	260, 294
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	244
CciI	TCATGA	1 cut(s)	130
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	53, 58, 164, 281
CspAI	ACCGGT	1 cut(s)	154
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	4 cut(s)	82, 95, 230, 252
CviKI_1	RGCY	4 cut(s)	82, 95, 230, 252
CviQI	GTAC	4 cut(s)	53, 58, 164, 281
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
DraIII	CACNNNGTG	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	152
Eco72I	CACGTG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	134
FaiI	YATR	2 cut(s)	51, 132
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	96, 144
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	3 cut(s)	105, 131, 150
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	4 cut(s)	57, 111, 213, 239
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	46, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	6 cut(s)	118, 135, 168, 174, 218, 285
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	2 cut(s)	96, 144
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	1 cut(s)	148
MboI	GATC	1 cut(s)	146
MboII	GAAGA	1 cut(s)	52
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	196, 244
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	252
MnlI	CCTC	2 cut(s)	150, 296
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	3 cut(s)	24, 215, 320
MslI	CAYNNNNRTG	1 cut(s)	292
Msp20I	TGGCCA	1 cut(s)	252
MspI	CCGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	292
PagI	TCATGA	1 cut(s)	130
PinAI	ACCGGT	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	232
PmaCI	CACGTG	1 cut(s)	294
PmlI	CACGTG	1 cut(s)	294
Ppu21I	YACGTR	1 cut(s)	294
PspCI	CACGTG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	4 cut(s)	54, 59, 165, 282
RsaNI	GTAC	4 cut(s)	53, 58, 164, 281
RseI	CAYNNNNRTG	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	24, 215, 320
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	146
Sau96I	GGNCC	1 cut(s)	152
ScaI	AGTACT	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	196, 244
SetI	ASST	6 cut(s)	97, 142, 232, 259, 296, 307
SfaNI	GCATC	1 cut(s)	33
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	170
SspI	AATATT	1 cut(s)	225
SspMI	CTAG	2 cut(s)	96, 144
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	4 cut(s)	57, 111, 213, 239
TaiI	ACGT	1 cut(s)	296
TasI	AATT	1 cut(s)	170
TatI	WGTACW	3 cut(s)	52, 57, 280
Tru1I	TTAA	3 cut(s)	24, 215, 320
Tru9I	TTAA	3 cut(s)	24, 215, 320
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	53, 197, 301
TspRI	CASTG	1 cut(s)	244
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	152
XspI	CTAG	2 cut(s)	96, 144
ZrmI	AGTACT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.