Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0020816

Physical Location & Seq

Genomic Coordinates Forward (+)

2980913 .. 2981350

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG045900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTCAGTGGGAAACTGCTCGGCTTCAAGCAGAAGCTAGATTTTCCAGACAGTCAAAACTACTCATCAGTCATGACCAACCTCCTAGATCTGGACCCGTCCCTGTATCACAATGCCTTGACATGAACGAAAGAGCACGGGAAATCCTGCTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGGCCAAGGTGGTGGTATTGGTAGTACTGCCACCCACGTTGGGCAGGAGGTTGGTTCATTTGGTAAAGTTGATGTTGAAGGCGTACTTACTAACTGTGATCAATTTGAGGCTCCAAGAACCAGTACATCAGTTCTGGGTTTTGATGAAGTTTTTGGGGAGTCTGGTACTAATAATGAATATGATGATCTATTGGAGGCATTACTACTCCAGCACAATCATAACAGTACTGGATTTGAAGTTGGGGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

145

Amino Acids

15.54

Weight (kDa)

4.59

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0020816)

Species	Orthologous Gene IDs
rosa_samantha	Rh3DG297200 Rh7AG046500 Rh7BG045400 Rh7BG045500 Rh7BG045900 Rh7CG046600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	187
AfaI	GTAC	5 cut(s)	211, 270, 310, 352, 412
AfiI	CCNNNNNNNGG	2 cut(s)	92, 225
AgsI	TTSAA	3 cut(s)	29, 263, 422
AluBI	AGCT	2 cut(s)	38, 173
AluI	AGCT	2 cut(s)	38, 173
Alw21I	GWGCWC	1 cut(s)	139
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	283
BfaI	CTAG	2 cut(s)	39, 87
BfmI	CTRYAG	1 cut(s)	174
BglII	AGATCT	1 cut(s)	89
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmcAI	AGTACT	2 cut(s)	211, 412
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	97, 297
BmsI	GCATC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 225
Bse1I	ACTGG	2 cut(s)	306, 418
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	2 cut(s)	92, 225
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	2 cut(s)	306, 418
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	92, 225
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	89, 283, 370
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	97, 297
BspMAI	CTGCAG	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	306, 418
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	89, 283, 370
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	5 cut(s)	54, 156, 182, 281, 410
BstDEI	CTNAG	2 cut(s)	6, 435
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	3 cut(s)	92, 286, 373
BstMBI	GATC	3 cut(s)	89, 283, 370
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	2 cut(s)	14, 187
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	5 cut(s)	210, 269, 309, 351, 411
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	2 cut(s)	74, 124
CviJI	RGCY	6 cut(s)	5, 25, 38, 173, 189, 296
CviKI_1	RGCY	6 cut(s)	5, 25, 38, 173, 189, 296
CviQI	GTAC	5 cut(s)	210, 269, 309, 351, 411
DdeI	CTNAG	2 cut(s)	6, 435
DpnI	GATC	3 cut(s)	91, 285, 372
DpnII	GATC	3 cut(s)	89, 283, 370
EaeI	YGGCCR	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	2 cut(s)	77, 127
FaiI	YATR	4 cut(s)	75, 125, 366, 405
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	2 cut(s)	73, 123
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	2 cut(s)	39, 87
GluI	GCNGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	77, 127
HinfI	GANTC	1 cut(s)	344
Hpy188III	TCNNGA	3 cut(s)	48, 74, 93
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	5 cut(s)	54, 156, 182, 281, 410
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	6, 435
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	77, 127
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	89, 283, 370
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	2 cut(s)	39, 87
MaeII	ACGT	1 cut(s)	222
MalI	GATC	3 cut(s)	91, 285, 372
MboI	GATC	3 cut(s)	89, 283, 370
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	4 cut(s)	93, 226, 286, 373
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	189
NdeII	GATC	3 cut(s)	89, 283, 370
NlaIII	CATG	2 cut(s)	77, 127
NlaIV	GGNNCC	2 cut(s)	97, 297
PagI	TCATGA	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	97, 297
PspPI	GGNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	5 cut(s)	211, 270, 310, 352, 412
RsaNI	GTAC	5 cut(s)	210, 269, 309, 351, 411
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	3 cut(s)	89, 283, 370
Sau96I	GGNCC	1 cut(s)	95
ScaI	AGTACT	2 cut(s)	211, 412
SchI	GAGTC	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	6 cut(s)	40, 85, 175, 196, 225, 237
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	1 cut(s)	287
SspI	AATATT	1 cut(s)	168
SspMI	CTAG	2 cut(s)	39, 87
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	5 cut(s)	54, 156, 182, 281, 410
TaiI	ACGT	1 cut(s)	225
TasI	AATT	1 cut(s)	287
TatI	WGTACW	3 cut(s)	209, 308, 410
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	2 cut(s)	14, 187
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	4 cut(s)	140, 231, 345, 375
TspRI	CASTG	2 cut(s)	14, 187
VpaK11BI	GGWCC	1 cut(s)	95
XspI	CTAG	2 cut(s)	39, 87
ZrmI	AGTACT	2 cut(s)	211, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.