Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0020816

Physical Location & Seq

Genomic Coordinates Reverse (-)

31038168 .. 31044471

Gene Structure 6304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG297200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAACGAAAGAGCACGAGAAATTCTGTTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGCTCAATTAGGTGGTGGTATTGGTAGCACCGCCGCCCACGTCGGGCAGGAGGTTGCTTCATTTGGTAAAGTTGATGTTGAGAGCGTGCTTGCTAATTGTGATCAGTTTGAGGCTCCAAGAACCAGTACATCTGTTCTGGGTTTTGATGAAGTTTTTGGGGAGTCCGGTACTAATAATGACTATGGTGAACTGTTGGAGGCATTACTACAGCACAATCATAACAGTACTGGATTTGAAGTCAAGGATGCTTGGAGTTTGGAACAACGTGGTGGGGCATCTCTAGGTTCGGTCGAGGATGGCCAGCTGATTGGGTCACCTTCATTGACACCAGTCACGATGGTAGCCAAACTCATTGATGGATATCTTGCTGAAGTTGCTCCTAATCAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

151

Amino Acids

15.78

Weight (kDa)

4.35

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020816)

Species	Orthologous Gene IDs
rosa_samantha	Rh3DG297200 Rh7AG046500 Rh7BG045400 Rh7BG045500 Rh7BG045900 Rh7CG046600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	93, 96
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	3 cut(s)	190, 232, 289
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	299
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	2 cut(s)	50, 367
AluI	AGCT	2 cut(s)	50, 367
Alw21I	GWGCWC	2 cut(s)	16, 67
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	260, 369
BalI	TGGCCA	1 cut(s)	363
BauI	CACGAG	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	16, 67
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	3 cut(s)	353, 394, 413
BclI	TGATCA	1 cut(s)	163
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	2 cut(s)	51, 269
BisI	GCNGC	2 cut(s)	51, 96
BlsI	GCNGC	2 cut(s)	52, 97
BmcAI	AGTACT	1 cut(s)	289
BmgBI	CACGTC	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	2 cut(s)	298, 347
BoxI	GACNNNNGTC	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	3 cut(s)	186, 295, 392
Bse8I	GATNNNNATC	1 cut(s)	423
BseGI	GGATG	2 cut(s)	313, 364
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseNI	ACTGG	3 cut(s)	186, 295, 392
BseXI	GCAGC	1 cut(s)	37
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	16, 67
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	105
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	16, 67
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	2 cut(s)	93, 96
BspANI	GGCC	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	55
BsrI	ACTGG	3 cut(s)	186, 295, 392
BssMI	GATC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst4CI	ACNGT	4 cut(s)	33, 59, 255, 287
BstC8I	GCNNGC	3 cut(s)	149, 153, 365
BstEII	GGTNACC	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	313, 364
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstPAI	GACNNNNGTC	1 cut(s)	392
BstPI	GGTNACC	1 cut(s)	375
BstSFI	CTRYAG	2 cut(s)	51, 269
BstV1I	GCAGC	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	313, 364
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	149, 153, 365
Csp6I	GTAC	3 cut(s)	189, 231, 288
CviJI	RGCY	5 cut(s)	50, 176, 363, 367, 407
CviKI_1	RGCY	5 cut(s)	50, 176, 363, 367, 407
CviQI	GTAC	3 cut(s)	189, 231, 288
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	453
Eco91I	GGTNACC	1 cut(s)	375
EcoO65I	GGTNACC	1 cut(s)	375
EcoRV	GATATC	1 cut(s)	425
FaiI	YATR	2 cut(s)	246, 282
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	51, 96
FokI	GGATG	2 cut(s)	320, 371
Fsp4HI	GCNGC	2 cut(s)	51, 96
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	2 cut(s)	51, 96
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	1 cut(s)	228
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	260, 369
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	4 cut(s)	33, 59, 255, 287
HpyCH4IV	ACGT	2 cut(s)	102, 328
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpySE526I	ACGT	2 cut(s)	102, 328
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	181, 445
LpnPI	CCDG	7 cut(s)	95, 185, 199, 241, 276, 377, 405
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	2 cut(s)	298, 347
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	2 cut(s)	102, 328
MaeIII	GTNAC	3 cut(s)	27, 375, 394
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	16, 67
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	3 cut(s)	21, 68, 157
MluNI	TGGCCA	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	4 cut(s)	106, 166, 253, 349
Mox20I	TGGCCA	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	2 cut(s)	35, 454
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	375, 394
PkrI	GCNGC	2 cut(s)	52, 97
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PshAI	GACNNNNGTC	1 cut(s)	392
PspEI	GGTNACC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	3 cut(s)	190, 232, 289
RsaNI	GTAC	3 cut(s)	189, 231, 288
SaqAI	TTAA	2 cut(s)	35, 454
SatI	GCNGC	2 cut(s)	51, 96
Sau3AI	GATC	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	289
SchI	GAGTC	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	16, 67
SetI	ASST	8 cut(s)	52, 76, 105, 117, 331, 349, 369, 382
SfaNI	GCATC	2 cut(s)	298, 347
SfcI	CTRYAG	2 cut(s)	51, 269
Sse9I	AATT	3 cut(s)	21, 68, 157
SsiI	CCGC	2 cut(s)	93, 96
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	344
TaaI	ACNGT	4 cut(s)	33, 59, 255, 287
TaiI	ACGT	2 cut(s)	105, 331
TaqI	TCGA	1 cut(s)	354
TaqII	GACCGA	1 cut(s)	340
TasI	AATT	3 cut(s)	21, 68, 157
TatI	WGTACW	2 cut(s)	188, 287
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	35, 454
Tru9I	TTAA	2 cut(s)	35, 454
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	2 cut(s)	375, 394
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	375, 394
TspDTI	ATGAA	4 cut(s)	17, 111, 225, 372
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	21
XspI	CTAG	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.