Rh7AG046500
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0020816
Physical Location & Seq
Forward (+)
3156279 .. 3157433
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG046500.1

Sequence Viewer

Length: 438 bp
ATGCCAAGGTGGACAGGGATCCCCGTTCCGCGCCAGAAAGAAAGAAGATCCACCGAACCGGACGGACCGCCTAGCCAACACAGACTTAACAATCTCCATTCCCTGCAAAGCCATGGCGCACGATTATCGTCCTTTAACTCTTTTCCAATAAAGATGCAGTATGTACTGTACTATTTATCGGAGACTGCTTGGCTTCAAGTAGAAGCTAGATTTTCCAGACAGTCAAAACTACTCATCAGTCATGACCAACCTCCTAGATCTGGACCGGTGCCTGTACCGCAATTCCTTGAGATGAACGAAAGAGCACGGGAAATCCTGTTACTGTTAAAGTCAATATTAGCTGCCGACAGTGCACTTGGTGGCCAAGGTGGTGGTATTGGCAGTAGTGTGGTACTACCACCCACGTGGGCAGGAGGTTGGTTCATTTGGTTAAGTTGA

Protein Analysis

145

Amino Acids

16.23

Weight (kDa)

10.09

Isoelectric Point (pI)

69.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020816)

Species Orthologous Gene IDs
rosa_samantha Rh3DG297200 Rh7AG046500 Rh7BG045400 Rh7BG045500 Rh7BG045900 Rh7CG046600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AccII CGCG 1 cut(s) 31
AciI CCGC 3 cut(s) 29, 68, 278
AclWI GGATC 3 cut(s) 13, 26, 42
AcoI YGGCCR 1 cut(s) 361
AcvI CACGTG 1 cut(s) 405
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 4 cut(s) 165, 170, 276, 393
AfiI CCNNNNNNNGG 1 cut(s) 260
AgeI ACCGGT 1 cut(s) 265
AgsI TTSAA 1 cut(s) 197
AleI CACNNNNGTG 1 cut(s) 403
AluBI AGCT 2 cut(s) 206, 341
AluI AGCT 2 cut(s) 206, 341
Alw21I GWGCWC 2 cut(s) 307, 355
Alw26I GTCTC 1 cut(s) 176
Alw44I GTGCAC 1 cut(s) 351
AlwI GGATC 3 cut(s) 13, 26, 42
AoxI GGCC 1 cut(s) 361
ApaLI GTGCAC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 341
AsiGI ACCGGT 1 cut(s) 265
AspLEI GCGC 2 cut(s) 33, 119
AspS9I GGNCC 2 cut(s) 65, 263
AvaII GGWCC 2 cut(s) 65, 263
BaeGI GKGCMC 1 cut(s) 355
BalI TGGCCA 1 cut(s) 363
BamHI GGATCC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 268
BbrPI CACGTG 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 307, 355
BbvI GCAGC 1 cut(s) 328
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 3 cut(s) 72, 207, 255
BglII AGATCT 1 cut(s) 257
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme18I GGWCC 2 cut(s) 65, 263
BmgT120I GGNCC 2 cut(s) 65, 263
BmiI GGNNCC 2 cut(s) 20, 270
BmsI GCATC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 5, 112, 364
BsaWI WCCGGW 2 cut(s) 58, 265
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse118I RCCGGY 1 cut(s) 265
BseDI CCNNGG 3 cut(s) 5, 112, 364
BseLI CCNNNNNNNGG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 363
BshNI GGYRCC 1 cut(s) 268
BshTI ACCGGT 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 307, 355
BsiSI CCGG 2 cut(s) 59, 266
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 307, 355
Bsp143I GATC 3 cut(s) 18, 47, 257
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 3 cut(s) 29, 68, 278
BspANI GGCC 1 cut(s) 363
BspFNI CGCG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 20, 270
BspPI GGATC 3 cut(s) 13, 26, 42
BspT107I GGYRCC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 3 cut(s) 5, 112, 364
BssMI GATC 3 cut(s) 18, 47, 257
BssT1I CCWWGG 3 cut(s) 5, 112, 364
Bst4CI ACNGT 4 cut(s) 168, 222, 324, 350
BstBAI YACGTR 1 cut(s) 405
BstDSI CCRYGG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 2 cut(s) 33, 119
BstKTI GATC 3 cut(s) 21, 50, 260
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 3 cut(s) 18, 47, 257
BstMWI GCNNNNNNNGC 2 cut(s) 277, 350
BstSLI GKGCMC 1 cut(s) 355
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 328
BstX2I RGATCY 3 cut(s) 18, 47, 257
BstXI CCANNNNNNTGG 2 cut(s) 371, 405
BstYI RGATCY 3 cut(s) 18, 47, 257
BsuRI GGCC 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 355
CciI TCATGA 1 cut(s) 241
CfoI GCGC 2 cut(s) 33, 119
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 65, 263
CpoI CGGWCCG 1 cut(s) 65
Csp6I GTAC 4 cut(s) 164, 169, 275, 392
CspAI ACCGGT 1 cut(s) 265
CspI CGGWCCG 1 cut(s) 65
CviAII CATG 2 cut(s) 113, 242
CviJI RGCY 6 cut(s) 75, 111, 193, 206, 341, 363
CviKI_1 RGCY 6 cut(s) 75, 111, 193, 206, 341, 363
CviQI GTAC 4 cut(s) 164, 169, 275, 392
DpnI GATC 3 cut(s) 20, 49, 259
DpnII GATC 3 cut(s) 18, 47, 257
DraIII CACNNNGTG 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 361
Eco130I CCWWGG 3 cut(s) 5, 112, 364
Eco47I GGWCC 2 cut(s) 65, 263
Eco72I CACGTG 1 cut(s) 405
EcoT14I CCWWGG 3 cut(s) 5, 112, 364
ErhI CCWWGG 3 cut(s) 5, 112, 364
FaeI CATG 2 cut(s) 116, 245
FaiI YATR 3 cut(s) 114, 162, 243
FatI CATG 2 cut(s) 112, 241
Fnu4HI GCNGC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 3 cut(s) 72, 207, 255
GlaI GCGC 2 cut(s) 32, 118
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 1 cut(s) 363
HapII CCGG 2 cut(s) 59, 266
HhaI GCGC 2 cut(s) 33, 119
Hin1II CATG 2 cut(s) 116, 245
Hin6I GCGC 2 cut(s) 31, 117
HinP1I GCGC 2 cut(s) 31, 117
HpaII CCGG 2 cut(s) 59, 266
Hpy166II GTNNAC 2 cut(s) 12, 353
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 3 cut(s) 216, 242, 261
Hpy8I GTNNAC 2 cut(s) 12, 353
HpyCH4III ACNGT 4 cut(s) 168, 222, 324, 350
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 3 cut(s) 106, 157, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 350
HpySE526I ACGT 1 cut(s) 404
Hsp92II CATG 2 cut(s) 116, 245
HspAI GCGC 2 cut(s) 31, 117
Kzo9I GATC 3 cut(s) 18, 47, 257
LpnPI CCDG 9 cut(s) 47, 72, 116, 229, 246, 279, 285, 329, 396
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 144
MaeI CTAG 3 cut(s) 72, 207, 255
MaeII ACGT 1 cut(s) 404
MaeIII GTNAC 1 cut(s) 318
MalI GATC 3 cut(s) 20, 49, 259
MboI GATC 3 cut(s) 18, 47, 257
MboII GAAGA 1 cut(s) 57
MflI RGATCY 3 cut(s) 18, 47, 257
MhlI GDGCHC 2 cut(s) 307, 355
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 1 cut(s) 281
MluNI TGGCCA 1 cut(s) 363
MnlI CCTC 2 cut(s) 261, 407
Mox20I TGGCCA 1 cut(s) 363
MscI TGGCCA 1 cut(s) 363
MseI TTAA 4 cut(s) 87, 135, 326, 431
MslI CAYNNNNRTG 1 cut(s) 403
Msp20I TGGCCA 1 cut(s) 363
MspI CCGG 2 cut(s) 59, 266
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 277, 350
NcoI CCATGG 1 cut(s) 112
NdeII GATC 3 cut(s) 18, 47, 257
NlaIII CATG 2 cut(s) 116, 245
NlaIV GGNNCC 2 cut(s) 20, 270
OliI CACNNNNGTG 1 cut(s) 403
PagI TCATGA 1 cut(s) 241
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 1 cut(s) 343
PmaCI CACGTG 1 cut(s) 405
PmlI CACGTG 1 cut(s) 405
Ppu21I YACGTR 1 cut(s) 405
PspCI CACGTG 1 cut(s) 405
PspN4I GGNNCC 2 cut(s) 20, 270
PspPI GGNCC 2 cut(s) 65, 263
PsuI RGATCY 3 cut(s) 18, 47, 257
RsaI GTAC 4 cut(s) 165, 170, 276, 393
RsaNI GTAC 4 cut(s) 164, 169, 275, 392
RseI CAYNNNNRTG 1 cut(s) 403
Rsr2I CGGWCCG 1 cut(s) 65
RsrII CGGWCCG 1 cut(s) 65
SaqAI TTAA 4 cut(s) 87, 135, 326, 431
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 3 cut(s) 18, 47, 257
Sau96I GGNCC 2 cut(s) 65, 263
SduI GDGCHC 2 cut(s) 307, 355
SetI ASST 7 cut(s) 11, 208, 253, 343, 370, 407, 418
SfaNI GCATC 1 cut(s) 144
SinI GGWCC 2 cut(s) 65, 263
SmiMI CAYNNNNRTG 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 281
SsiI CCGC 3 cut(s) 29, 68, 278
SspI AATATT 1 cut(s) 336
SspMI CTAG 3 cut(s) 72, 207, 255
StyI CCWWGG 3 cut(s) 5, 112, 364
TaaI ACNGT 4 cut(s) 168, 222, 324, 350
TaiI ACGT 1 cut(s) 407
TasI AATT 1 cut(s) 281
TatI WGTACW 2 cut(s) 163, 168
Tru1I TTAA 4 cut(s) 87, 135, 326, 431
Tru9I TTAA 4 cut(s) 87, 135, 326, 431
TscAI CASTG 1 cut(s) 355
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 308, 412
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 355
VneI GTGCAC 1 cut(s) 351
VpaK11BI GGWCC 2 cut(s) 65, 263
XspI CTAG 3 cut(s) 72, 207, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.