Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0020816

Physical Location & Seq

Genomic Coordinates Forward (+)

2909371 .. 2910090

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG045500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGTAGTTTTGACTGTCTGGAAAATCTCAGCCTTCAAGCAGAAGCTAGATTTTCCAGACAGTCAAAACTACTCATTAGTCAACCACCTAGATTTGGACCCGTGCCTATACCACAATGCCTTGACATGAACGAAAGAGCACGGGAAATCCTGCTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGGCCAAGGTGGTGGTATTGGTATTACTGCCACCCACGTTGGGCAGGAGGTTGGTTCATTTGGTAAAGTTGATGTTGAAGGCGTGCTTACTAATTGTGATCAGTTTGAGGCTCGAAGAACCAGTACATCAGTTCTGGTTTTTGATGAAGTTTTTGGGGAGTCTGGTACTAATATTGAATATGATGAACTATTGGAGGCATTACTACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

132

Amino Acids

14.28

Weight (kDa)

4.46

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020816)

Species	Orthologous Gene IDs
rosa_samantha	Rh3DG297200 Rh7AG046500 Rh7BG045400 Rh7BG045500 Rh7BG045900 Rh7CG046600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	190
AfaI	GTAC	2 cut(s)	313, 355
AfiI	CCNNNNNNNGG	2 cut(s)	95, 228
AgsI	TTSAA	3 cut(s)	38, 266, 365
AluBI	AGCT	2 cut(s)	47, 176
AluI	AGCT	2 cut(s)	47, 176
Alw21I	GWGCWC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	192
BarI	GAAGNNNNNNTAC	2 cut(s)	295, 327
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	163
BclI	TGATCA	1 cut(s)	286
BfaI	CTAG	3 cut(s)	48, 90, 397
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 228
Bse1I	ACTGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	95, 228
BseMII	CTCAG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	95, 228
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	286
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	4 cut(s)	17, 63, 159, 185
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	163
BstXI	CCANNNNNNTGG	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	312, 354
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	5 cut(s)	33, 47, 176, 192, 299
CviKI_1	RGCY	5 cut(s)	33, 47, 176, 192, 299
CviQI	GTAC	2 cut(s)	312, 354
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	130
FaiI	YATR	3 cut(s)	110, 128, 369
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	1 cut(s)	126
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	3 cut(s)	48, 90, 397
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	20, 57
Hpy8I	GTNNAC	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	44, 260
HpyCH4III	ACNGT	4 cut(s)	17, 63, 159, 185
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	286
LpnPI	CCDG	7 cut(s)	5, 70, 164, 218, 308, 322, 336
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	3 cut(s)	48, 90, 397
MaeII	ACGT	1 cut(s)	225
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	1 cut(s)	280
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	3 cut(s)	229, 289, 376
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	192
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	313, 355
RsaNI	GTAC	2 cut(s)	312, 354
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	6 cut(s)	49, 91, 178, 199, 228, 240
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	98
Sse9I	AATT	1 cut(s)	280
SspI	AATATT	2 cut(s)	171, 361
SspMI	CTAG	3 cut(s)	48, 90, 397
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	4 cut(s)	17, 63, 159, 185
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	301
TasI	AATT	1 cut(s)	280
TatI	WGTACW	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	143, 234, 348, 387
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	98
XspI	CTAG	3 cut(s)	48, 90, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.