Rorug06G0315800
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014676
Physical Location & Seq
Forward (+)
46747623 .. 46752037
4415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0315800.1

Sequence Viewer

Length: 936 bp
ATGGAGGTCTCTCTGTCTTCAGCTACCTCTAGAAGTTATCTTCATCATTCTTCACCAGAACCGTTGCTTCTCAAAAGAGTAAAATTTCCCACTTGTGATCGTTGTTCACTGTCCCAATCTTCCACTAGAAGAGTTGGACAACCCTTAGTTGGTAAAACTGGAGCTCTCTCTGCCAAGAGTTACTCTCTGAAGGTTTTATGTTATCAAAAGAGGGAAGCTCCAGTAGTAGAGGGCAGGTGTATAGAAGAAGTATATGATGCTTTGGCTGAACGCCTTGTCCCTACAGCAGCAGCAATGTCAAATCCAAATTTTAAGCATATTGTGGGTTTGGCTGGTCCTCCTGGAGCTGGAAAGAGTACTCTTGCATCTGAAGTAGTGCGCCGTGTAAACAAGTTATGGCCTCAGAAAGCTTCATCATTGGATTCCCAAGTTACGCCTCCAGATGTGGCTGCGGTTCTTCCCATGGATGGATATCATCTTTACCGTTCTCAGTTGGATGCAATGGAGAATCCTGAGGAAGCTCATGCAAGAAGGGGAGCTCCATGGACCTTCAACCCTGAGCTACTACTCAAGTCTTTGAAGACTCTGAGAAGTCAGGGATCAGTATATGCACCTTCATTTGACCATGGTGTTGGAGATCCAGTAGAAGATGATATCTTTGTGAGCATTCAGAATAAAGTGGTCATAGTGGAAGGAAATTATTTGTTCTTGGATAATGGGGTGTGGAAGGAAATATCGTCTATGTTTGATGAGAAGTGGTTCATAGAGGTTGATATTGACAAATCTATGCAACGAGTTCTCAAGAGACATATTGCAACAGGGAAGCCCCCAGATGTTGCTAAATGGCGGATTGAGTACAATGACCGGCCTAATGCAGAGACCATAATCAAATCAAAGAAGAATGCTGATTTGATAATCAAGTCAATCGACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

311

Amino Acids

34.61

Weight (kDa)

8.73

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 107 - 308 2.6e-09 Phosphoribulokinase / Uridine kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38651 FvH4_2g38651 FvH4_2g38651
malus_domestica MD08G1014200.v1.1
prunus_persica Prupe.1G367200_v2.0.a1 Prupe.1G367200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0302661
rosa_laevigata RLG00000011150
rosa_multiflora Rmu_sc0005455.1_g000002
rosa_roxburghii Rroxscaffold_7G00165460
rosa_rugosa Rorug06G0315800 Rorug06G0315900
rosa_samantha Rh6AG429200 Rh6BG473300 Rh6CG441500 Rh6DG428300
rosa_wichuraiana Rw6G037150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 225
AciI CCGC 2 cut(s) 452, 847
AclWI GGATC 2 cut(s) 607, 632
AcsI RAATTY 2 cut(s) 83, 307
AcuI CTGAAG 2 cut(s) 209, 390
AfaI GTAC 2 cut(s) 358, 857
AfiI CCNNNNNNNGG 3 cut(s) 149, 347, 467
AgsI TTSAA 2 cut(s) 553, 580
AjnI CCWGG 1 cut(s) 340
AloI GAACNNNNNNTCC 2 cut(s) 261, 293
AluBI AGCT 8 cut(s) 23, 164, 218, 347, 410, 521, 539, 562
AluI AGCT 8 cut(s) 23, 164, 218, 347, 410, 521, 539, 562
Alw21I GWGCWC 2 cut(s) 166, 541
Alw26I GTCTC 3 cut(s) 13, 799, 872
AlwI GGATC 2 cut(s) 607, 632
AoxI GGCC 2 cut(s) 398, 866
ApeKI GCWGC 3 cut(s) 287, 290, 449
ApoI RAATTY 2 cut(s) 83, 307
Asp700I GAANNNNTTC 1 cut(s) 758
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 335, 546
AsuHPI GGTGA 1 cut(s) 45
AvaII GGWCC 2 cut(s) 335, 546
AxyI CCTNAGG 1 cut(s) 513
BanII GRGCYC 2 cut(s) 166, 541
BbsI GAAGAC 2 cut(s) 9, 587
Bbv12I GWGCWC 2 cut(s) 166, 541
BbvI GCAGC 3 cut(s) 299, 302, 436
BccI CCATC 1 cut(s) 461
BceAI ACGGC 1 cut(s) 366
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 3 cut(s) 13, 799, 872
BfaI CTAG 2 cut(s) 30, 126
BfmI CTRYAG 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 225
BisI GCNGC 3 cut(s) 288, 291, 450
BlsI GCNGC 3 cut(s) 289, 292, 451
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 2 cut(s) 335, 546
BmgT120I GGNCC 2 cut(s) 335, 546
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 3 cut(s) 247, 374, 487
BpiI GAAGAC 2 cut(s) 9, 587
BplI GAGNNNNNCTC 4 cut(s) 169, 201, 202, 234
BpmI CTGGAG 4 cut(s) 180, 204, 363, 423
Bpu10I CCTNAGC 1 cut(s) 558
BpuEI CTTGAG 2 cut(s) 554, 785
BsaBI GATNNNNATC 1 cut(s) 471
BsaI GGTCTC 2 cut(s) 13, 872
BsaJI CCNNGG 3 cut(s) 462, 542, 625
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 347, 467
Bse118I RCCGGY 1 cut(s) 864
Bse1I ACTGG 3 cut(s) 163, 221, 641
Bse21I CCTNAGG 1 cut(s) 513
Bse3DI GCAATG 2 cut(s) 300, 507
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 3 cut(s) 462, 542, 625
BseGI GGATG 2 cut(s) 472, 502
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 3 cut(s) 149, 347, 467
BseMI GCAATG 2 cut(s) 300, 507
BseMII CTCAG 5 cut(s) 416, 503, 504, 549, 578
BseNI ACTGG 3 cut(s) 163, 221, 641
BseXI GCAGC 3 cut(s) 299, 302, 436
BshFI GGCC 2 cut(s) 400, 868
BsiHKAI GWGCWC 2 cut(s) 166, 541
BsiSI CCGG 1 cut(s) 865
BslFI GGGAC 2 cut(s) 97, 263
BslI CCNNNNNNNGG 3 cut(s) 149, 347, 467
BsmAI GTCTC 3 cut(s) 13, 799, 872
BsmFI GGGAC 2 cut(s) 97, 263
BsmI GAATGC 2 cut(s) 666, 907
BsnI GGCC 2 cut(s) 400, 868
Bso31I GGTCTC 2 cut(s) 13, 872
Bsp1286I GDGCHC 2 cut(s) 166, 541
Bsp143I GATC 3 cut(s) 97, 599, 637
Bsp19I CCATGG 3 cut(s) 462, 542, 625
BspACI CCGC 2 cut(s) 452, 847
BspANI GGCC 2 cut(s) 400, 868
BspCNI CTCAG 5 cut(s) 415, 502, 505, 550, 579
BspMI ACCTGC 1 cut(s) 225
BspPI GGATC 2 cut(s) 607, 632
BspTNI GGTCTC 2 cut(s) 13, 872
BsrDI GCAATG 2 cut(s) 300, 507
BsrFI RCCGGY 1 cut(s) 864
BsrI ACTGG 3 cut(s) 163, 221, 641
BssAI RCCGGY 1 cut(s) 864
BssECI CCNNGG 3 cut(s) 462, 542, 625
BssMI GATC 3 cut(s) 97, 599, 637
BssT1I CCWWGG 3 cut(s) 462, 542, 625
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 3 cut(s) 63, 111, 485
Bst6I CTCTTC 1 cut(s) 124
BstDEI CTNAG 6 cut(s) 145, 402, 489, 513, 558, 587
BstDSI CCRYGG 3 cut(s) 462, 542, 625
BstF5I GGATG 2 cut(s) 472, 502
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 3 cut(s) 100, 602, 640
BstMAI GTCTC 3 cut(s) 13, 799, 872
BstMBI GATC 3 cut(s) 97, 599, 637
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 299, 302, 436
BstV2I GAAGAC 2 cut(s) 9, 587
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 1 cut(s) 632
BstYI RGATCY 1 cut(s) 637
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 2 cut(s) 400, 868
BtgI CCRYGG 3 cut(s) 462, 542, 625
BtsCI GGATG 2 cut(s) 472, 502
BtsIMutI CAGTG 1 cut(s) 107
BveI ACCTGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 864
Cfr13I GGNCC 2 cut(s) 335, 546
Csp6I GTAC 2 cut(s) 357, 856
CviAII CATG 4 cut(s) 463, 524, 543, 626
CviQI GTAC 2 cut(s) 357, 856
DdeI CTNAG 6 cut(s) 145, 402, 489, 513, 558, 587
DpnI GATC 3 cut(s) 99, 601, 639
DpnII GATC 3 cut(s) 97, 599, 637
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 862
Ecl136II GAGCTC 2 cut(s) 164, 539
Eco130I CCWWGG 3 cut(s) 462, 542, 625
Eco24I GRGCYC 2 cut(s) 166, 541
Eco31I GGTCTC 2 cut(s) 13, 872
Eco32I GATATC 2 cut(s) 473, 655
Eco47I GGWCC 2 cut(s) 335, 546
Eco53kI GAGCTC 2 cut(s) 164, 539
Eco57I CTGAAG 2 cut(s) 209, 390
Eco81I CCTNAGG 1 cut(s) 513
EcoICRI GAGCTC 2 cut(s) 164, 539
EcoRII CCWGG 1 cut(s) 340
EcoRV GATATC 2 cut(s) 473, 655
EcoT14I CCWWGG 3 cut(s) 462, 542, 625
EcoT38I GRGCYC 2 cut(s) 166, 541
ErhI CCWWGG 3 cut(s) 462, 542, 625
FaeI CATG 4 cut(s) 466, 527, 546, 629
FaqI GGGAC 2 cut(s) 97, 263
FatI CATG 4 cut(s) 462, 523, 542, 625
Fnu4HI GCNGC 3 cut(s) 288, 291, 450
FokI GGATG 2 cut(s) 479, 509
FriOI GRGCYC 2 cut(s) 166, 541
Fsp4HI GCNGC 3 cut(s) 288, 291, 450
FspBI CTAG 2 cut(s) 30, 126
GlaI GCGC 1 cut(s) 380
GluI GCNGC 3 cut(s) 288, 291, 450
GsuI CTGGAG 4 cut(s) 180, 204, 363, 423
HaeIII GGCC 2 cut(s) 400, 868
HapII CCGG 1 cut(s) 865
HhaI GCGC 1 cut(s) 381
Hin1II CATG 4 cut(s) 466, 527, 546, 629
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 3 cut(s) 422, 508, 583
HpaII CCGG 1 cut(s) 865
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 107, 388
Hpy188I TCNGA 6 cut(s) 189, 370, 405, 588, 672, 935
Hpy188III TCNNGA 4 cut(s) 30, 440, 512, 802
Hpy8I GTNNAC 2 cut(s) 107, 388
HpyAV CCTTC 6 cut(s) 184, 525, 559, 624, 686, 721
HpyCH4III ACNGT 3 cut(s) 63, 111, 485
HpyCH4V TGCA 7 cut(s) 365, 500, 527, 611, 790, 815, 875
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 6 cut(s) 145, 402, 489, 513, 558, 587
Hsp92II CATG 4 cut(s) 466, 527, 546, 629
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 97, 599, 637
LmnI GCTCC 5 cut(s) 161, 223, 344, 536, 544
Lsp1109I GCAGC 3 cut(s) 299, 302, 436
LweI GCATC 3 cut(s) 247, 374, 487
MaeI CTAG 2 cut(s) 30, 126
MaeIII GTNAC 2 cut(s) 179, 430
MalI GATC 3 cut(s) 99, 601, 639
MboI GATC 3 cut(s) 97, 599, 637
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 2 cut(s) 166, 541
MluCI AATT 3 cut(s) 83, 307, 697
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 3 cut(s) 115, 474, 613
MnlI CCTC 8 cut(s) 37, 204, 223, 348, 411, 447, 508, 760
MroXI GAANNNNTTC 1 cut(s) 758
MseI TTAA 1 cut(s) 312
MspI CCGG 1 cut(s) 865
MspR9I CCNGG 1 cut(s) 342
Mva1269I GAATGC 2 cut(s) 666, 907
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 170
NcoI CCATGG 3 cut(s) 462, 542, 625
NdeII GATC 3 cut(s) 97, 599, 637
NlaIII CATG 4 cut(s) 466, 527, 546, 629
PaqCI CACCTGC 1 cut(s) 225
PctI GAATGC 2 cut(s) 666, 907
PdmI GAANNNNTTC 1 cut(s) 758
PfeI GAWTC 2 cut(s) 422, 508
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 3 cut(s) 289, 292, 451
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
Psp124BI GAGCTC 2 cut(s) 166, 541
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspPI GGNCC 2 cut(s) 335, 546
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 2 cut(s) 358, 857
RsaNI GTAC 2 cut(s) 357, 856
SacI GAGCTC 2 cut(s) 166, 541
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 3 cut(s) 288, 291, 450
Sau3AI GATC 3 cut(s) 97, 599, 637
Sau96I GGNCC 2 cut(s) 335, 546
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 2 cut(s) 166, 541
SfaNI GCATC 3 cut(s) 247, 374, 487
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 2 cut(s) 335, 546
SmlI CTYRAG 2 cut(s) 569, 800
SmoI CTYRAG 2 cut(s) 569, 800
Sse9I AATT 3 cut(s) 83, 307, 697
SsiI CCGC 2 cut(s) 452, 847
SspMI CTAG 2 cut(s) 30, 126
SstI GAGCTC 2 cut(s) 166, 541
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 3 cut(s) 462, 542, 625
TaaI ACNGT 3 cut(s) 63, 111, 485
TaqI TCGA 1 cut(s) 927
TasI AATT 3 cut(s) 83, 307, 697
TatI WGTACW 2 cut(s) 356, 855
TfiI GAWTC 2 cut(s) 422, 508
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 114
TseI GCWGC 3 cut(s) 287, 290, 449
TspDTI ATGAA 4 cut(s) 32, 402, 606, 751
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 2 cut(s) 335, 546
XapI RAATTY 2 cut(s) 83, 307
XbaI TCTAGA 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 758
XspI CTAG 2 cut(s) 30, 126
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.