Rroxscaffold_7G00165460
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014676
Physical Location & Seq
Reverse (-)
7181068 .. 7182942
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165460.1

Sequence Viewer

Length: 933 bp
ATGGATAATGAAGGTAGTGTTCAACCTAAGCAAGAACGTTTGAGGACTAGGTGGACACCGGCCCTTGACAAGACGTTTGCAGACTTGGTTATTAAGCAGATTCAATTGGGGAACAGGCCAAACAATGTTTTTGACAAGAAGACGTGGAATAGCATCCGCGATGAGTTTAACAAGCAAACGGATCTCAACTTCAACAACAATCAATTGAGGAAGCACCTGGATGTTCTGAGGACGCGCTTCTACAATCTCAAGTCTGCTTATGATCAAACTAATGACTATGCTTTGGAAGATCCGTGTTGTATTGAGTTTGATCATCTATGGGCAGACCTAGGGGTACAGCAGCCGAGGCCTGAAACTACTAAAGTGAAGGATTGCCCCATATATGATCAGCTGTGCACAATATTCACAGACTCAGCAGCCGATGGGAAATACGCTGAATCTAGTCATTATGAAGGGTTGGACAAATCTGCAGGAATGGACAATGTAGTTCTGAGTTCCTGTCCTGACGGTGAAGCCCCTCAGTCTGAAAACCCACCATCCTCAAGACCTGTGCAAGGAAATGCATTATTAGCAGAAAAGGTGACCAAGGTTGTAGTAGAGAGAAAAAGGAAGCGAACATCTGATACACAGTCTTCTGAGGGTCAAAGCAGAAGGGATCAAGAAACATGTGATGCCATGGCAAAAGCCCTACAAGATATGATTGCAGCCTCAAAGCTGAGGACAGCGGCAACAATGCCTAGAGACGACAAGTTTAGCATAAGTAATTGTATAAGAGCACTGGATGAGATAAAAGACATTGATGAACAGCTATACTTTGCTGCAGTTGACCTGTTTGATAACCCTAATTTAAGGGAGACATTCATCTCTCTAAAAGGTGATCAAATACGGTTGAGATGGTTGCAAGCGAAGTGCAGCAAAGCTGCCTACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

310

Amino Acids

35.3

Weight (kDa)

5.61

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 17 - 86 1.8e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38651 FvH4_2g38651 FvH4_2g38651
malus_domestica MD08G1014200.v1.1
prunus_persica Prupe.1G367200_v2.0.a1 Prupe.1G367200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0302661
rosa_laevigata RLG00000011150
rosa_multiflora Rmu_sc0005455.1_g000002
rosa_roxburghii Rroxscaffold_7G00165460
rosa_rugosa Rorug06G0315800 Rorug06G0315900
rosa_samantha Rh6AG429200 Rh6BG473300 Rh6CG441500 Rh6DG428300
rosa_wichuraiana Rw6G037150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 159, 235
AciI CCGC 2 cut(s) 157, 725
AclI AACGTT 1 cut(s) 37
AclWI GGATC 3 cut(s) 189, 284, 663
AfaI GTAC 1 cut(s) 336
AfiI CCNNNNNNNGG 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 3 cut(s) 23, 104, 193
AjiI CACGTC 1 cut(s) 144
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 4 cut(s) 391, 715, 808, 920
AluI AGCT 4 cut(s) 391, 715, 808, 920
Alw21I GWGCWC 2 cut(s) 398, 778
Alw26I GTCTC 2 cut(s) 735, 848
Alw44I GTGCAC 1 cut(s) 394
AlwI GGATC 3 cut(s) 189, 284, 663
AoxI GGCC 3 cut(s) 60, 116, 347
ApaLI GTGCAC 1 cut(s) 394
ApeKI GCWGC 6 cut(s) 340, 416, 704, 818, 912, 920
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspA2I CCTAGG 1 cut(s) 328
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 3 cut(s) 521, 592, 887
AvrII CCTAGG 1 cut(s) 328
BaeGI GKGCMC 1 cut(s) 398
BbsI GAAGAC 2 cut(s) 146, 624
Bbv12I GWGCWC 2 cut(s) 398, 778
BbvCI CCTCAGC 1 cut(s) 716
BbvI GCAGC 6 cut(s) 352, 428, 716, 805, 907, 924
BccI CCATC 3 cut(s) 416, 544, 888
BciT130I CCWGG 1 cut(s) 218
BclI TGATCA 4 cut(s) 262, 310, 385, 877
BcoDI GTCTC 2 cut(s) 735, 848
BfaI CTAG 4 cut(s) 48, 329, 441, 738
BfmI CTRYAG 3 cut(s) 468, 819, 925
BisI GCNGC 7 cut(s) 341, 417, 705, 726, 819, 913, 921
BlnI CCTAGG 1 cut(s) 328
BlsI GCNGC 7 cut(s) 342, 418, 706, 727, 820, 914, 922
Bme1390I CCNGG 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 162, 661
BpiI GAAGAC 2 cut(s) 146, 624
Bpu10I CCTNAGC 2 cut(s) 27, 716
BpuEI CTTGAG 2 cut(s) 233, 526
BsaJI CCNNGG 4 cut(s) 328, 344, 585, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 783
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 4 cut(s) 328, 344, 585, 675
BseGI GGATG 4 cut(s) 153, 226, 536, 787
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMII CTCAG 6 cut(s) 218, 426, 482, 533, 627, 707
BseNI ACTGG 1 cut(s) 783
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 6 cut(s) 352, 428, 716, 805, 907, 924
BsgI GTGCAG 1 cut(s) 931
Bsh1236I CGCG 2 cut(s) 159, 235
BshFI GGCC 3 cut(s) 62, 118, 349
BsiHKAI GWGCWC 2 cut(s) 398, 778
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 2 cut(s) 735, 848
BsmBI CGTCTC 1 cut(s) 735
BsnI GGCC 3 cut(s) 62, 118, 349
Bsp1286I GDGCHC 2 cut(s) 398, 778
Bsp143I GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 2 cut(s) 157, 725
BspANI GGCC 3 cut(s) 62, 118, 349
BspCNI CTCAG 6 cut(s) 219, 425, 483, 532, 628, 708
BspFNI CGCG 2 cut(s) 159, 235
BspMAI CTGCAG 2 cut(s) 472, 823
BspPI GGATC 3 cut(s) 189, 284, 663
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 1 cut(s) 783
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 4 cut(s) 328, 344, 585, 675
BssMI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
BssT1I CCWWGG 3 cut(s) 328, 585, 675
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 4 cut(s) 509, 630, 888, 929
BstC8I GCNNGC 1 cut(s) 903
BstDEI CTNAG 7 cut(s) 27, 227, 412, 491, 519, 636, 716
BstDSI CCRYGG 1 cut(s) 675
BstEII GGTNACC 1 cut(s) 580
BstENI CCTNNNNNAGG 1 cut(s) 552
BstF5I GGATG 4 cut(s) 153, 226, 536, 787
BstFNI CGCG 2 cut(s) 159, 235
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 7 cut(s) 184, 265, 292, 313, 388, 658, 880
BstMAI GTCTC 2 cut(s) 735, 848
BstMBI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
BstMWI GCNNNNNNNGC 2 cut(s) 346, 569
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 669
BstPI GGTNACC 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 3 cut(s) 468, 819, 925
BstSLI GKGCMC 1 cut(s) 398
BstUI CGCG 2 cut(s) 159, 235
BstV1I GCAGC 6 cut(s) 352, 428, 716, 805, 907, 924
BstV2I GAAGAC 2 cut(s) 146, 624
BstX2I RGATCY 2 cut(s) 181, 289
BstYI RGATCY 2 cut(s) 181, 289
BsuRI GGCC 3 cut(s) 62, 118, 349
BtgI CCRYGG 1 cut(s) 675
BtgZI GCGATG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 144
BtsCI GGATG 4 cut(s) 153, 226, 536, 787
BtsIMutI CAGTG 1 cut(s) 776
Cac8I GCNNGC 1 cut(s) 903
CfoI GCGC 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 335
CviAII CATG 2 cut(s) 666, 676
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 7 cut(s) 27, 227, 412, 491, 519, 636, 716
DpnI GATC 7 cut(s) 183, 264, 291, 312, 387, 657, 879
DpnII GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
Eco130I CCWWGG 3 cut(s) 328, 585, 675
Eco147I AGGCCT 1 cut(s) 349
Eco91I GGTNACC 1 cut(s) 580
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoO65I GGTNACC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 3 cut(s) 328, 585, 675
EcoT22I ATGCAT 1 cut(s) 565
ErhI CCWWGG 3 cut(s) 328, 585, 675
Esp3I CGTCTC 1 cut(s) 735
FaeI CATG 2 cut(s) 669, 679
FatI CATG 2 cut(s) 665, 675
FbaI TGATCA 4 cut(s) 262, 310, 385, 877
Fnu4HI GCNGC 7 cut(s) 341, 417, 705, 726, 819, 913, 921
FokI GGATG 4 cut(s) 140, 233, 523, 794
Fsp4HI GCNGC 7 cut(s) 341, 417, 705, 726, 819, 913, 921
FspBI CTAG 4 cut(s) 48, 329, 441, 738
GlaI GCGC 1 cut(s) 236
GluI GCNGC 7 cut(s) 341, 417, 705, 726, 819, 913, 921
HaeIII GGCC 3 cut(s) 62, 118, 349
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 669, 679
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HinfI GANTC 3 cut(s) 100, 410, 437
HpaII CCGG 1 cut(s) 59
HphI GGTGA 3 cut(s) 521, 592, 887
Hpy166II GTNNAC 3 cut(s) 54, 396, 826
Hpy188I TCNGA 5 cut(s) 228, 492, 526, 622, 637
Hpy188III TCNNGA 3 cut(s) 503, 543, 659
Hpy8I GTNNAC 3 cut(s) 54, 396, 826
HpyAV CCTTC 4 cut(s) 5, 361, 446, 645
HpyCH4III ACNGT 4 cut(s) 509, 630, 888, 929
HpyCH4IV ACGT 3 cut(s) 37, 74, 143
HpyCH4V TGCA 9 cut(s) 80, 396, 470, 553, 563, 704, 821, 901, 912
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 569
HpyF3I CTNAG 7 cut(s) 27, 227, 412, 491, 519, 636, 716
HpySE526I ACGT 3 cut(s) 37, 74, 143
Hsp92II CATG 2 cut(s) 669, 679
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 4 cut(s) 262, 310, 385, 877
Kzo9I GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
Lsp1109I GCAGC 6 cut(s) 352, 428, 716, 805, 907, 924
LweI GCATC 2 cut(s) 162, 661
MaeI CTAG 4 cut(s) 48, 329, 441, 738
MaeII ACGT 3 cut(s) 37, 74, 143
MaeIII GTNAC 1 cut(s) 580
MalI GATC 7 cut(s) 183, 264, 291, 312, 387, 657, 879
MboI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
MboII GAAGA 3 cut(s) 151, 299, 624
MfeI CAATTG 2 cut(s) 104, 203
MflI RGATCY 2 cut(s) 181, 289
MhlI GDGCHC 2 cut(s) 398, 778
MluCI AATT 4 cut(s) 104, 203, 763, 844
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 9 cut(s) 36, 201, 222, 339, 528, 550, 631, 711, 718
Mph1103I ATGCAT 1 cut(s) 565
MseI TTAA 3 cut(s) 93, 168, 848
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 2 cut(s) 391, 725
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 2 cut(s) 104, 203
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 2 cut(s) 159, 235
MwoI GCNNNNNNNGC 2 cut(s) 346, 569
NcoI CCATGG 1 cut(s) 675
NdeII GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
NlaIII CATG 2 cut(s) 669, 679
NmeAIII GCCGAG 1 cut(s) 369
NmuCI GTSAC 1 cut(s) 580
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 1 cut(s) 669
PceI AGGCCT 1 cut(s) 349
PciI ACATGT 1 cut(s) 665
PfeI GAWTC 2 cut(s) 100, 437
PkrI GCNGC 7 cut(s) 342, 418, 706, 727, 820, 914, 922
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PscI ACATGT 1 cut(s) 665
Psp1406I AACGTT 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 216
PspEI GGTNACC 1 cut(s) 580
PspGI CCWGG 1 cut(s) 216
PspPI GGNCC 1 cut(s) 61
PsrI GAACNNNNNNTAC 2 cut(s) 607, 639
PstI CTGCAG 2 cut(s) 472, 823
PsuI RGATCY 2 cut(s) 181, 289
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 3 cut(s) 93, 168, 848
SatI GCNGC 7 cut(s) 341, 417, 705, 726, 819, 913, 921
Sau3AI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 2 cut(s) 398, 778
SfaNI GCATC 2 cut(s) 162, 661
SfcI CTRYAG 3 cut(s) 468, 819, 925
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 2 cut(s) 248, 541
SmoI CTYRAG 2 cut(s) 248, 541
Sse9I AATT 4 cut(s) 104, 203, 763, 844
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 2 cut(s) 157, 725
SspI AATATT 1 cut(s) 402
SspMI CTAG 4 cut(s) 48, 329, 441, 738
StuI AGGCCT 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 3 cut(s) 328, 585, 675
TaaI ACNGT 4 cut(s) 509, 630, 888, 929
TaiI ACGT 3 cut(s) 40, 77, 146
TasI AATT 4 cut(s) 104, 203, 763, 844
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 2 cut(s) 100, 437
Tru1I TTAA 3 cut(s) 93, 168, 848
Tru9I TTAA 3 cut(s) 93, 168, 848
TscAI CASTG 1 cut(s) 783
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 6 cut(s) 340, 416, 704, 818, 912, 920
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 4 cut(s) 24, 465, 816, 850
TspGWI ACGGA 2 cut(s) 194, 282
TspRI CASTG 1 cut(s) 783
VneI GTGCAC 1 cut(s) 394
XagI CCTNNNNNAGG 1 cut(s) 552
XceI RCATGY 1 cut(s) 669
XmaJI CCTAGG 1 cut(s) 328
XspI CTAG 4 cut(s) 48, 329, 441, 738
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.