Prupe.1G367200_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014676
Physical Location & Seq
Reverse (-)
33614376 .. 33616488
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G367200.2

Sequence Viewer

Length: 933 bp
ATGGACAATGAAGGCAGTCATCAACCCAAGCAAGAACGTTCAAGGACTAGGTGGACAGCTTCCCTCGATAAGACATTCGCAGACTTGGTTGTTAAGCAGATTCAACTGGGAAACAGACCCAACAATGTCTTCGACAAGAAAACATGGAACATTATTCGTGACGAGTTTAACAGGCAAACAGATCTCAACTTCAACAACAATCAATTGAGGAAGCACTTGGATGTTCTAAGGACGCGCTTCTACGGTCTCAAGTCAGCTTATGATCAAACTAATGACTTCACTCTGGATGATTCTTGTTGTATCGAGTTTGCTCACCTGTGGGAAGACCTTGGGGTACAGCCTAGGCCTGAAACAATTAAAGTCAAGGACTGTCCCATATATGATCAGCTCTGCACAATATTCGCAGACTCAACCGCAGATGGGAAGTATGCCCAATCTAGTCACTATGGGGGGTTGGACAAGTCCGCCGGAATAGACAATGCAGGTTTGAGTTCTTATCCTGACTGTGAAGCCCCTCCTCATTCTGAAATCCCACCATCCTCAAAGCCTGTGCAAGGAAATGCATTATCAGCAGAAAAGGTGCCCAAGGTTATAGCAGAGAGAAAAAGGAAACGTCCATCTGAGACACACTCTTCTGAGGATCAAAGAAGCAGAAGGGATCAAGAAATATGTGATACCATGGCACAAGCCATGCGAGAGATGATTGCTGCCTCAAAGTTGAGGAGAGCCACGGCAATGCCTAGTGACAAATTTTCGATAACAAATTGTATTAGAGCACTGGATGAGATAGAAGGCATTGGCGGACAGCTCTACTTTCGGGCACTGGACCTGTTTGAGGACCCCAATTTAAGGGAGACCTTCCTCTCTTTAAAAGGCAATCAAATACGGTTGACTTGGTTGCAAGCCAAGTGCAGTAAAACTGCCTATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

311

Amino Acids

35.24

Weight (kDa)

7.0

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38651 FvH4_2g38651 FvH4_2g38651
malus_domestica MD08G1014200.v1.1
prunus_persica Prupe.1G367200_v2.0.a1 Prupe.1G367200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0302661
rosa_laevigata RLG00000011150
rosa_multiflora Rmu_sc0005455.1_g000002
rosa_roxburghii Rroxscaffold_7G00165460
rosa_rugosa Rorug06G0315800 Rorug06G0315900
rosa_samantha Rh6AG429200 Rh6BG473300 Rh6CG441500 Rh6DG428300
rosa_wichuraiana Rw6G037150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 473
AccB1I GGYRCC 1 cut(s) 580
AccII CGCG 1 cut(s) 235
AciI CCGC 3 cut(s) 414, 465, 801
AclI AACGTT 1 cut(s) 37
AclWI GGATC 2 cut(s) 648, 666
AcsI RAATTY 1 cut(s) 749
AfaI GTAC 1 cut(s) 336
AfiI CCNNNNNNNGG 4 cut(s) 420, 554, 835, 849
AgsI TTSAA 3 cut(s) 42, 104, 193
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 4 cut(s) 59, 257, 388, 808
AluI AGCT 4 cut(s) 59, 257, 388, 808
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 3 cut(s) 251, 617, 848
AlwI GGATC 2 cut(s) 648, 666
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 707
ApoI RAATTY 1 cut(s) 749
AspA2I CCTAGG 1 cut(s) 341
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 826, 838
AsuHPI GGTGA 1 cut(s) 305
AvaII GGWCC 2 cut(s) 826, 838
AvrII CCTAGG 1 cut(s) 341
BaeGI GKGCMC 2 cut(s) 585, 823
BanI GGYRCC 1 cut(s) 580
BbsI GAAGAC 2 cut(s) 121, 330
Bbv12I GWGCWC 1 cut(s) 778
BbvI GCAGC 1 cut(s) 694
BccI CCATC 3 cut(s) 413, 544, 625
BceAI ACGGC 1 cut(s) 747
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BclI TGATCA 2 cut(s) 262, 382
BcoDI GTCTC 3 cut(s) 251, 617, 848
BfaI CTAG 4 cut(s) 48, 342, 438, 741
BfuAI ACCTGC 1 cut(s) 473
BglII AGATCT 1 cut(s) 181
BisI GCNGC 1 cut(s) 708
BlnI CCTAGG 1 cut(s) 341
BlsI GCNGC 1 cut(s) 709
Bme18I GGWCC 2 cut(s) 826, 838
BmgT120I GGNCC 2 cut(s) 826, 838
BmiI GGNNCC 2 cut(s) 582, 840
BmrI ACTGGG 1 cut(s) 116
BmuI ACTGGG 1 cut(s) 116
BpiI GAAGAC 2 cut(s) 121, 330
BplI GAGNNNNNCTC 2 cut(s) 614, 646
BpuEI CTTGAG 1 cut(s) 233
BsaI GGTCTC 2 cut(s) 251, 848
BsaJI CCNNGG 5 cut(s) 328, 341, 585, 678, 729
Bsc4I CCNNNNNNNGG 4 cut(s) 420, 554, 835, 849
Bse1I ACTGG 3 cut(s) 111, 783, 828
Bse3DI GCAATG 1 cut(s) 741
BseDI CCNNGG 5 cut(s) 328, 341, 585, 678, 729
BseGI GGATG 4 cut(s) 226, 292, 536, 787
BseLI CCNNNNNNNGG 4 cut(s) 420, 554, 835, 849
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 2 cut(s) 612, 627
BseNI ACTGG 3 cut(s) 111, 783, 828
BseRI GAGGAG 2 cut(s) 507, 736
BseSI GKGCMC 2 cut(s) 585, 823
BseXI GCAGC 1 cut(s) 694
BsgI GTGCAG 2 cut(s) 376, 931
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 778
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 4 cut(s) 420, 554, 835, 849
BsmAI GTCTC 3 cut(s) 251, 617, 848
BsmFI GGGAC 1 cut(s) 357
BsnI GGCC 1 cut(s) 346
Bso31I GGTCTC 2 cut(s) 251, 848
Bsp1286I GDGCHC 3 cut(s) 585, 778, 823
Bsp143I GATC 5 cut(s) 181, 262, 382, 640, 658
Bsp19I CCATGG 1 cut(s) 678
BspACI CCGC 3 cut(s) 414, 465, 801
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 2 cut(s) 613, 628
BspFNI CGCG 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 582, 840
BspMI ACCTGC 1 cut(s) 473
BspPI GGATC 2 cut(s) 648, 666
BspT107I GGYRCC 1 cut(s) 580
BspTNI GGTCTC 2 cut(s) 251, 848
BsrDI GCAATG 1 cut(s) 741
BsrI ACTGG 3 cut(s) 111, 783, 828
BssECI CCNNGG 5 cut(s) 328, 341, 585, 678, 729
BssMI GATC 5 cut(s) 181, 262, 382, 640, 658
BssT1I CCWWGG 4 cut(s) 328, 341, 585, 678
Bst4CI ACNGT 4 cut(s) 245, 371, 506, 888
Bst6I CTCTTC 1 cut(s) 637
BstC8I GCNNGC 1 cut(s) 903
BstDEI CTNAG 3 cut(s) 227, 621, 636
BstDSI CCRYGG 2 cut(s) 678, 729
BstENI CCTNNNNNAGG 2 cut(s) 552, 833
BstF5I GGATG 4 cut(s) 226, 292, 536, 787
BstFNI CGCG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 5 cut(s) 184, 265, 385, 643, 661
BstMAI GTCTC 3 cut(s) 251, 617, 848
BstMBI GATC 5 cut(s) 181, 262, 382, 640, 658
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstSLI GKGCMC 2 cut(s) 585, 823
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 694
BstV2I GAAGAC 2 cut(s) 121, 330
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 346
BtgI CCRYGG 2 cut(s) 678, 729
BtsCI GGATG 4 cut(s) 226, 292, 536, 787
BtsIMutI CAGTG 2 cut(s) 776, 821
BveI ACCTGC 1 cut(s) 473
Cac8I GCNNGC 1 cut(s) 903
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 826, 838
CseI GACGC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 335
CviAII CATG 3 cut(s) 144, 679, 691
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 3 cut(s) 227, 621, 636
DpnI GATC 5 cut(s) 183, 264, 384, 642, 660
DpnII GATC 5 cut(s) 181, 262, 382, 640, 658
DraI TTTAAA 1 cut(s) 870
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
EciI GGCGGA 2 cut(s) 454, 816
Eco130I CCWWGG 4 cut(s) 328, 341, 585, 678
Eco147I AGGCCT 1 cut(s) 346
Eco31I GGTCTC 2 cut(s) 251, 848
Eco47I GGWCC 2 cut(s) 826, 838
EcoNI CCTNNNNNAGG 2 cut(s) 552, 833
EcoO109I RGGNCCY 1 cut(s) 838
EcoT14I CCWWGG 4 cut(s) 328, 341, 585, 678
EcoT22I ATGCAT 1 cut(s) 565
ErhI CCWWGG 4 cut(s) 328, 341, 585, 678
FaeI CATG 3 cut(s) 147, 682, 694
FaqI GGGAC 1 cut(s) 357
FatI CATG 3 cut(s) 143, 678, 690
FbaI TGATCA 2 cut(s) 262, 382
Fnu4HI GCNGC 1 cut(s) 708
FokI GGATG 4 cut(s) 233, 299, 523, 794
Fsp4HI GCNGC 1 cut(s) 708
FspBI CTAG 4 cut(s) 48, 342, 438, 741
GlaI GCGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 708
HaeIII GGCC 1 cut(s) 346
HapII CCGG 1 cut(s) 468
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 237
Hin1II CATG 3 cut(s) 147, 682, 694
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 891
HindII GTYRAC 1 cut(s) 891
HinfI GANTC 3 cut(s) 100, 290, 407
HpaII CCGG 1 cut(s) 468
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 54, 891
Hpy188I TCNGA 3 cut(s) 526, 622, 637
Hpy188III TCNNGA 4 cut(s) 158, 284, 500, 662
Hpy8I GTNNAC 2 cut(s) 54, 891
HpyAV CCTTC 4 cut(s) 5, 648, 785, 868
HpyCH4III ACNGT 4 cut(s) 245, 371, 506, 888
HpyCH4IV ACGT 2 cut(s) 37, 613
HpyCH4V TGCA 6 cut(s) 393, 482, 553, 563, 901, 912
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 3 cut(s) 227, 621, 636
HpySE526I ACGT 2 cut(s) 37, 613
Hsp92II CATG 3 cut(s) 147, 682, 694
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 2 cut(s) 262, 382
Kzo9I GATC 5 cut(s) 181, 262, 382, 640, 658
Lsp1109I GCAGC 1 cut(s) 694
MaeI CTAG 4 cut(s) 48, 342, 438, 741
MaeII ACGT 2 cut(s) 37, 613
MaeIII GTNAC 3 cut(s) 158, 440, 743
MalI GATC 5 cut(s) 183, 264, 384, 642, 660
MboI GATC 5 cut(s) 181, 262, 382, 640, 658
MboII GAAGA 3 cut(s) 121, 335, 624
MfeI CAATTG 1 cut(s) 203
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 3 cut(s) 585, 778, 823
MluCI AATT 5 cut(s) 203, 354, 749, 763, 844
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 435
Mph1103I ATGCAT 1 cut(s) 565
MseI TTAA 5 cut(s) 93, 168, 357, 848, 869
MslI CAYNNNNRTG 2 cut(s) 219, 734
MspI CCGG 1 cut(s) 468
MunI CAATTG 1 cut(s) 203
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 569
NcoI CCATGG 1 cut(s) 678
NdeII GATC 5 cut(s) 181, 262, 382, 640, 658
NlaIII CATG 3 cut(s) 147, 682, 694
NlaIV GGNNCC 2 cut(s) 582, 840
NmuCI GTSAC 3 cut(s) 158, 440, 743
NsiI ATGCAT 1 cut(s) 565
PceI AGGCCT 1 cut(s) 346
PfeI GAWTC 2 cut(s) 100, 290
PkrI GCNGC 1 cut(s) 709
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
PpuMI RGGWCCY 1 cut(s) 838
Psp1406I AACGTT 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 838
PspN4I GGNNCC 2 cut(s) 582, 840
PspPI GGNCC 2 cut(s) 826, 838
PspPPI RGGWCCY 1 cut(s) 838
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
RseI CAYNNNNRTG 2 cut(s) 219, 734
SaqAI TTAA 5 cut(s) 93, 168, 357, 848, 869
SatI GCNGC 1 cut(s) 708
Sau3AI GATC 5 cut(s) 181, 262, 382, 640, 658
Sau96I GGNCC 2 cut(s) 826, 838
SchI GAGTC 1 cut(s) 401
SduI GDGCHC 3 cut(s) 585, 778, 823
SinI GGWCC 2 cut(s) 826, 838
SmiMI CAYNNNNRTG 2 cut(s) 219, 734
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 5 cut(s) 203, 354, 749, 763, 844
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 3 cut(s) 414, 465, 801
SspI AATATT 1 cut(s) 399
SspMI CTAG 4 cut(s) 48, 342, 438, 741
StuI AGGCCT 1 cut(s) 346
StyI CCWWGG 4 cut(s) 328, 341, 585, 678
TaaI ACNGT 4 cut(s) 245, 371, 506, 888
TaiI ACGT 2 cut(s) 40, 616
TaqI TCGA 4 cut(s) 66, 132, 303, 755
TasI AATT 5 cut(s) 203, 354, 749, 763, 844
TfiI GAWTC 2 cut(s) 100, 290
Tru1I TTAA 5 cut(s) 93, 168, 357, 848, 869
Tru9I TTAA 5 cut(s) 93, 168, 357, 848, 869
TscAI CASTG 2 cut(s) 783, 828
TseFI GTSAC 3 cut(s) 158, 440, 743
TseI GCWGC 1 cut(s) 707
Tsp45I GTSAC 3 cut(s) 158, 440, 743
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 2 cut(s) 783, 828
VpaK11BI GGWCC 2 cut(s) 826, 838
XagI CCTNNNNNAGG 2 cut(s) 552, 833
XapI RAATTY 1 cut(s) 749
XmaJI CCTAGG 1 cut(s) 341
XspI CTAG 4 cut(s) 48, 342, 438, 741
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.