MD08G1014200.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0014676
Physical Location & Seq
Reverse (-)
1069685 .. 1071339
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1014200.v1.1.491

Sequence Viewer

Length: 933 bp
ATGGATAATGAAGTTAGTCATCGTCAGCCTAAGCAAGAACGTTCGAGGACTCGGTGGACAGCGTCCCTCGATAAGACATTCGCGGACTTGGTTGTGAAGCAGATTCAGTTGGGAAACAGACCGAACAATGTGTTCGACAAGAAAACCTGGAACATTATTCGCGATGAGTTCAATAAGCAAACGGATCTCAACTTCAACAACAATCAGTTGAGGAAGCACTTGGATGTTCTGAGGACGCGGTTTTACAACCTCAAGTCGGCTTATGATCAAACGAATGACTTCACTCTGGATGATTCTTGCTGTATCGAGTTTGAGCATCTGTGGGAGGACCTCGGGGTGCAGACTAAACCTGAGACGATTAAAGTCAAGGACTGTCCGATATATGATCAGCTGTGCACGATATTCGCAGACTCTGCAGCCGATGGGAAGTATGCTCAGTCTAGTCACTACGAGGGGTCGGACAAGTCTGCCGGAATAGACAGTGCAGGTTTGATTTCCTGTCCCGACAGTGAAGCCCCCCATTCTGAAATCCCATCATCCTCAGAGCCTGTGCAAGGCAAAGCGTCAACAGCGGAAAAGGTGGGCAAGGTTATAGCGGATAGGAAAAGGAAACGTCCAGCTGAGGCAGAGTCTTCCGCGGGTCAAAGCAGAAGGGATCAAGAAATATGTGATACAATGGCACAAGCCCTTTCGGAGATGATTGCTGCATCAAAGTTGAGGAGAGCGGCAACAATGCCTAGCGATGACAGATTTTCCATTACCAGTTGTATCAGAGCACTGGATGAGATACAAGGCATTGACGAAGAACTCTACTTTGCCACTCTAGACCTGTTCGAGGACCCTAATTTGAGAGAGACATTCATCTGTTTGAAAGGCGATCAGATAAGGTCGACTTGGTTGCGAGGGAAGTGCAGTAAAACTACGCATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

311

Amino Acids

35.07

Weight (kDa)

5.52

Isoelectric Point (pI)

57.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 18 - 98 1.7e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38651 FvH4_2g38651 FvH4_2g38651
malus_domestica MD08G1014200.v1.1
prunus_persica Prupe.1G367200_v2.0.a1 Prupe.1G367200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0302661
rosa_laevigata RLG00000011150
rosa_multiflora Rmu_sc0005455.1_g000002
rosa_roxburghii Rroxscaffold_7G00165460
rosa_rugosa Rorug06G0315800 Rorug06G0315900
rosa_samantha Rh6AG429200 Rh6BG473300 Rh6CG441500 Rh6DG428300
rosa_wichuraiana Rw6G037150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 476
AccBSI CCGCTC 1 cut(s) 725
AccI GTMKAC 1 cut(s) 890
AccII CGCG 4 cut(s) 83, 162, 238, 638
AciI CCGC 7 cut(s) 83, 238, 572, 596, 636, 638, 725
AclI AACGTT 1 cut(s) 40
AclWI GGATC 2 cut(s) 192, 663
AfiI CCNNNNNNNGG 3 cut(s) 256, 554, 835
AgsI TTSAA 3 cut(s) 172, 196, 871
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 2 cut(s) 391, 620
AluI AGCT 2 cut(s) 391, 620
Alw21I GWGCWC 2 cut(s) 398, 778
Alw26I GTCTC 2 cut(s) 347, 848
Alw44I GTGCAC 1 cut(s) 394
AlwI GGATC 2 cut(s) 192, 663
AlwNI CAGNNNCTG 2 cut(s) 413, 548
Ama87I CYCGRG 1 cut(s) 332
ApaLI GTGCAC 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 416, 704
Asp700I GAANNNNTTC 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 328, 838
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 2 cut(s) 328, 838
BaeGI GKGCMC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 2 cut(s) 398, 778
BbvCI CCTCAGC 1 cut(s) 621
BbvI GCAGC 2 cut(s) 428, 691
BccI CCATC 2 cut(s) 416, 541
BcgI CGANNNNNNTGC 6 cut(s) 385, 419, 880, 891, 914, 925
BciT130I CCWGG 1 cut(s) 148
BclI TGATCA 2 cut(s) 265, 385
BcoDI GTCTC 2 cut(s) 347, 848
BfaI CTAG 3 cut(s) 441, 738, 824
BfmI CTRYAG 1 cut(s) 414
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 3 cut(s) 417, 705, 726
BlsI GCNGC 3 cut(s) 418, 706, 727
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 2 cut(s) 328, 838
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 328, 838
BmiI GGNNCC 1 cut(s) 840
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 325, 716
BpiI GAAGAC 1 cut(s) 624
Bpu10I CCTNAGC 2 cut(s) 30, 621
BpuEI CTTGAG 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 331, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 554, 835
Bse1I ACTGG 2 cut(s) 762, 783
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 331, 636
BseGI GGATG 4 cut(s) 229, 295, 536, 787
BseLI CCNNNNNNNGG 3 cut(s) 256, 554, 835
BseMII CTCAG 5 cut(s) 221, 342, 449, 555, 612
BseNI ACTGG 2 cut(s) 762, 783
BseRI GAGGAG 1 cut(s) 733
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 2 cut(s) 428, 691
BsgI GTGCAG 3 cut(s) 359, 504, 931
Bsh1236I CGCG 4 cut(s) 83, 162, 238, 638
BsiHKAI GWGCWC 2 cut(s) 398, 778
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 1 cut(s) 471
BslFI GGGAC 2 cut(s) 49, 486
BslI CCNNNNNNNGG 3 cut(s) 256, 554, 835
BsmAI GTCTC 2 cut(s) 347, 848
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 49, 486
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 398, 778
Bsp143I GATC 5 cut(s) 184, 265, 385, 655, 877
Bsp68I TCGCGA 1 cut(s) 162
BspACI CCGC 7 cut(s) 83, 238, 572, 596, 636, 638, 725
BspCNI CTCAG 5 cut(s) 222, 343, 448, 554, 613
BspFNI CGCG 4 cut(s) 83, 162, 238, 638
BspLI GGNNCC 1 cut(s) 840
BspMAI CTGCAG 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 2 cut(s) 192, 663
BsrBI CCGCTC 1 cut(s) 725
BsrI ACTGG 2 cut(s) 762, 783
BssECI CCNNGG 2 cut(s) 331, 636
BssMI GATC 5 cut(s) 184, 265, 385, 655, 877
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 3 cut(s) 374, 482, 509
BstAPI GCANNNNNTGC 1 cut(s) 413
BstDEI CTNAG 6 cut(s) 30, 230, 351, 435, 541, 621
BstDSI CCRYGG 1 cut(s) 636
BstENI CCTNNNNNAGG 2 cut(s) 552, 833
BstF5I GGATG 4 cut(s) 229, 295, 536, 787
BstFNI CGCG 4 cut(s) 83, 162, 238, 638
BstKTI GATC 5 cut(s) 187, 268, 388, 658, 880
BstMAI GTCTC 2 cut(s) 347, 848
BstMBI GATC 5 cut(s) 184, 265, 385, 655, 877
BstMWI GCNNNNNNNGC 2 cut(s) 413, 569
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 398
BstUI CGCG 4 cut(s) 83, 162, 238, 638
BstV1I GCAGC 2 cut(s) 428, 691
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 636
BtgZI GCGATG 2 cut(s) 177, 756
BtsCI GGATG 4 cut(s) 229, 295, 536, 787
BtsIMutI CAGTG 3 cut(s) 487, 514, 776
BtuMI TCGCGA 1 cut(s) 162
BveI ACCTGC 1 cut(s) 476
CaiI CAGNNNCTG 2 cut(s) 413, 548
Cfr13I GGNCC 2 cut(s) 328, 838
Cfr42I CCGCGG 1 cut(s) 639
CseI GACGC 3 cut(s) 51, 244, 552
CviAII CATG 1 cut(s) 926
CviJI RGCY 8 cut(s) 28, 260, 391, 419, 515, 547, 620, 686
CviKI_1 RGCY 8 cut(s) 28, 260, 391, 419, 515, 547, 620, 686
DdeI CTNAG 6 cut(s) 30, 230, 351, 435, 541, 621
DpnI GATC 5 cut(s) 186, 267, 387, 657, 879
DpnII GATC 5 cut(s) 184, 265, 385, 655, 877
Eco47I GGWCC 2 cut(s) 328, 838
Eco88I CYCGRG 1 cut(s) 332
EcoNI CCTNNNNNAGG 2 cut(s) 552, 833
EcoO109I RGGNCCY 2 cut(s) 328, 838
EcoRII CCWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 1 cut(s) 929
FaiI YATR 7 cut(s) 264, 382, 384, 432, 593, 667, 927
FalI AAGNNNNNCTT 2 cut(s) 877, 909
FaqI GGGAC 2 cut(s) 49, 486
FatI CATG 1 cut(s) 925
FauI CCCGC 1 cut(s) 631
FbaI TGATCA 2 cut(s) 265, 385
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 3 cut(s) 417, 705, 726
FokI GGATG 4 cut(s) 236, 302, 523, 794
Fsp4HI GCNGC 3 cut(s) 417, 705, 726
FspBI CTAG 3 cut(s) 441, 738, 824
GluI GCNGC 3 cut(s) 417, 705, 726
HapII CCGG 1 cut(s) 471
HgaI GACGC 3 cut(s) 51, 244, 552
Hin1II CATG 1 cut(s) 929
HincII GTYRAC 2 cut(s) 567, 891
HindII GTYRAC 2 cut(s) 567, 891
HinfI GANTC 5 cut(s) 49, 103, 293, 410, 629
HpaII CCGG 1 cut(s) 471
Hpy166II GTNNAC 4 cut(s) 57, 396, 567, 891
Hpy188I TCNGA 8 cut(s) 231, 378, 460, 526, 544, 694, 773, 882
Hpy188III TCNNGA 5 cut(s) 161, 287, 503, 659, 824
Hpy8I GTNNAC 4 cut(s) 57, 396, 567, 891
HpyAV CCTTC 1 cut(s) 645
HpyCH4III ACNGT 3 cut(s) 374, 482, 509
HpyCH4IV ACGT 2 cut(s) 40, 613
HpyCH4V TGCA 7 cut(s) 340, 396, 416, 485, 553, 707, 912
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 569
HpyF3I CTNAG 6 cut(s) 30, 230, 351, 435, 541, 621
HpySE526I ACGT 2 cut(s) 40, 613
Hsp92II CATG 1 cut(s) 929
Ksp22I TGATCA 2 cut(s) 265, 385
KspI CCGCGG 1 cut(s) 639
Kzo9I GATC 5 cut(s) 184, 265, 385, 655, 877
Lsp1109I GCAGC 2 cut(s) 428, 691
LweI GCATC 2 cut(s) 325, 716
MaeI CTAG 3 cut(s) 441, 738, 824
MaeII ACGT 2 cut(s) 40, 613
MaeIII GTNAC 1 cut(s) 443
MalI GATC 5 cut(s) 186, 267, 387, 657, 879
MbiI CCGCTC 1 cut(s) 725
MboI GATC 5 cut(s) 184, 265, 385, 655, 877
MboII GAAGA 2 cut(s) 624, 815
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 398, 778
MluCI AATT 1 cut(s) 844
MlyI GAGTC 3 cut(s) 43, 404, 638
MmeI TCCRAC 1 cut(s) 438
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 4 cut(s) 391, 572, 620, 638
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MvnI CGCG 4 cut(s) 83, 162, 238, 638
MwoI GCNNNNNNNGC 2 cut(s) 413, 569
NdeII GATC 5 cut(s) 184, 265, 385, 655, 877
NlaIII CATG 1 cut(s) 929
NlaIV GGNNCC 1 cut(s) 840
NmuCI GTSAC 1 cut(s) 443
NruI TCGCGA 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 2 cut(s) 103, 293
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 418, 706, 727
PleI GAGTC 3 cut(s) 43, 404, 637
PpsI GAGTC 3 cut(s) 43, 404, 637
PpuMI RGGWCCY 2 cut(s) 328, 838
Psp1406I AACGTT 1 cut(s) 40
Psp5II RGGWCCY 2 cut(s) 328, 838
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 840
PspPI GGNCC 2 cut(s) 328, 838
PspPPI RGGWCCY 2 cut(s) 328, 838
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 2 cut(s) 413, 548
PsuI RGATCY 1 cut(s) 184
PsyI GACNNNGTC 1 cut(s) 61
PvuII CAGCTG 2 cut(s) 391, 620
RruI TCGCGA 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 222
SacII CCGCGG 1 cut(s) 639
SalI GTCGAC 1 cut(s) 889
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 3 cut(s) 417, 705, 726
Sau3AI GATC 5 cut(s) 184, 265, 385, 655, 877
Sau96I GGNCC 2 cut(s) 328, 838
SchI GAGTC 3 cut(s) 43, 404, 638
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 2 cut(s) 398, 778
SfaNI GCATC 2 cut(s) 325, 716
SfcI CTRYAG 1 cut(s) 414
Sfr303I CCGCGG 1 cut(s) 639
SgrBI CCGCGG 1 cut(s) 639
SinI GGWCC 2 cut(s) 328, 838
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 1 cut(s) 844
SsiI CCGC 7 cut(s) 83, 238, 572, 596, 636, 638, 725
SspMI CTAG 3 cut(s) 441, 738, 824
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 3 cut(s) 374, 482, 509
TaiI ACGT 2 cut(s) 43, 616
TaqI TCGA 6 cut(s) 44, 69, 135, 306, 834, 890
TaqII GACCGA 1 cut(s) 136
TasI AATT 1 cut(s) 844
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 2 cut(s) 103, 293
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 3 cut(s) 487, 514, 783
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 2 cut(s) 416, 704
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 2 cut(s) 24, 850
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 3 cut(s) 487, 514, 783
Tth111I GACNNNGTC 1 cut(s) 61
VneI GTGCAC 1 cut(s) 394
VpaK11BI GGWCC 2 cut(s) 328, 838
XagI CCTNNNNNAGG 2 cut(s) 552, 833
XbaI TCTAGA 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 890
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 3 cut(s) 441, 738, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.