FvH4_2g38651
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014676
Physical Location & Seq
Reverse (-)
27903350 .. 27906314
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38651.t2

Sequence Viewer

Length: 933 bp
ATGGATAATGAAGGTGGTGTTCAACCGAAGCAAGAACGTTCGAGGACGAGGTGGACACCAGCCCTTGACAAGACATTTGCAGAGTTGGTTATTAAGCAGATTCAGTTGGGGAACAGGCCAAACAATGTTTTCGATAAGAAAACATGGAATATTATCCGCGATGAGTTTAACAGGCTAACGGATCTCAACTTCAACAACAATCAGTTGAGGAAGCACCTGGACGTTCTAAGGACACGCTTCTACAGTCTGAAGTCGGCTTATGATCAACCTAATGACTATGCTTTGGAAGATCCGTGTTGTATCGAGTTTGATCATCTATGGGCAGACCTAGGGGCACAGCAGCCGAGGGCTGAAACTTCTAAAGTAAAGGATTGTCCCATATATGATCAGCTGTGCACAATATTCACAGACTCAGCAGCTGATGGGAAATACGCTCAATCTAGTCATTATGAAGGGTTAGACAAGTCGGCAGGAACGGACAATGTAGGTTTCAGTTCCTGTCCTCTCAGTGAAGCCCCTCACTCTGAAAATACACCATCCTCAAGACCTGTGCAAGGAAATTTGTTATTTGCAGAAAAGGTTACCAAGCTTGTAGTAGAGAGGAAAAGGAAGCGTACATCTGATGCACAGGCTTCTGAGAGTCAAAGCAGAAGAGATCAAGAAACATGTGATACTATGGCAAAAGCCCTACAAGATATGATTGCAGCCTCAAAGCTGAGGACAGCCGCAACAATGCCTAGAGATGACAAGTTTAGCATAAGTAATTGTATAAGAGCATTGGACGAGATAAAAGACGTTGACGAACAGCGTTACTTTGCTGCAGTTGACCTGTTTGATAACCCTAATTTAAGGGAGACATTCATCTCTCTAAAAGGTGATCATATACGGTTGACGTGGTTGCAAGGGAAGTGCAGTAAAACTGCCTACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

311

Amino Acids

35.31

Weight (kDa)

6.26

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 17 - 89 2.9e-12 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38651 FvH4_2g38651 FvH4_2g38651
malus_domestica MD08G1014200.v1.1
prunus_persica Prupe.1G367200_v2.0.a1 Prupe.1G367200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0302661
rosa_laevigata RLG00000011150
rosa_multiflora Rmu_sc0005455.1_g000002
rosa_roxburghii Rroxscaffold_7G00165460
rosa_rugosa Rorug06G0315800 Rorug06G0315900
rosa_samantha Rh6AG429200 Rh6BG473300 Rh6CG441500 Rh6DG428300
rosa_wichuraiana Rw6G037150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 157, 726
AclI AACGTT 1 cut(s) 37
AclWI GGATC 2 cut(s) 189, 284
AcsI RAATTY 1 cut(s) 559
AcuI CTGAAG 1 cut(s) 269
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 2 cut(s) 23, 193
AjiI CACGTC 1 cut(s) 894
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 4 cut(s) 391, 419, 589, 715
AluI AGCT 4 cut(s) 391, 419, 589, 715
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 848
Alw44I GTGCAC 1 cut(s) 394
AlwI GGATC 2 cut(s) 189, 284
AlwNI CAGNNNCTG 2 cut(s) 419, 498
AoxI GGCC 1 cut(s) 116
ApaLI GTGCAC 1 cut(s) 394
ApeKI GCWGC 4 cut(s) 340, 416, 704, 818
ApoI RAATTY 1 cut(s) 559
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspA2I CCTAGG 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 887
AvrII CCTAGG 1 cut(s) 328
BaeGI GKGCMC 2 cut(s) 337, 398
Bbv12I GWGCWC 1 cut(s) 398
BbvCI CCTCAGC 1 cut(s) 716
BbvI GCAGC 4 cut(s) 352, 428, 716, 805
BccI CCATC 2 cut(s) 416, 544
BciT130I CCWGG 1 cut(s) 218
BclI TGATCA 4 cut(s) 262, 310, 385, 877
BcoDI GTCTC 1 cut(s) 848
BfaI CTAG 3 cut(s) 329, 441, 738
BfmI CTRYAG 3 cut(s) 241, 819, 925
BisI GCNGC 5 cut(s) 341, 417, 705, 726, 819
BlnI CCTAGG 1 cut(s) 328
BlsI GCNGC 5 cut(s) 342, 418, 706, 727, 820
Bme1390I CCNGG 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 894
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 613
Bpu10I CCTNAGC 1 cut(s) 716
BpuEI CTTGAG 1 cut(s) 526
BsaJI CCNNGG 2 cut(s) 328, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 554
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 328, 344
BseGI GGATG 1 cut(s) 536
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMII CTCAG 4 cut(s) 426, 520, 627, 707
BseSI GKGCMC 2 cut(s) 337, 398
BseXI GCAGC 4 cut(s) 352, 428, 716, 805
BsgI GTGCAG 1 cut(s) 931
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 398
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 1 cut(s) 848
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 337, 398
Bsp143I GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
BspACI CCGC 2 cut(s) 157, 726
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 4 cut(s) 425, 519, 628, 708
BspFNI CGCG 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 823
BspPI GGATC 2 cut(s) 189, 284
BssECI CCNNGG 2 cut(s) 328, 344
BssMI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 3 cut(s) 245, 888, 929
Bst6I CTCTTC 1 cut(s) 646
BstDEI CTNAG 5 cut(s) 227, 412, 506, 636, 716
BstEII GGTNACC 1 cut(s) 580
BstENI CCTNNNNNAGG 1 cut(s) 552
BstF5I GGATG 1 cut(s) 536
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 7 cut(s) 184, 265, 292, 313, 388, 658, 880
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 669
BstPI GGTNACC 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 3 cut(s) 241, 819, 925
BstSLI GKGCMC 2 cut(s) 337, 398
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 4 cut(s) 352, 428, 716, 805
BstX2I RGATCY 2 cut(s) 181, 289
BstYI RGATCY 2 cut(s) 181, 289
BsuRI GGCC 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 894
BtsCI GGATG 1 cut(s) 536
BtsIMutI CAGTG 1 cut(s) 514
CaiI CAGNNNCTG 2 cut(s) 419, 498
Csp6I GTAC 1 cut(s) 615
CviAII CATG 2 cut(s) 144, 666
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 5 cut(s) 227, 412, 506, 636, 716
DpnI GATC 7 cut(s) 183, 264, 291, 312, 387, 657, 879
DpnII GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
Eam1104I CTCTTC 1 cut(s) 646
EarI CTCTTC 1 cut(s) 646
Eco130I CCWWGG 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 269
Eco91I GGTNACC 1 cut(s) 580
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoO65I GGTNACC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 2 cut(s) 147, 669
FaqI GGGAC 1 cut(s) 360
FatI CATG 2 cut(s) 143, 665
FbaI TGATCA 4 cut(s) 262, 310, 385, 877
Fnu4HI GCNGC 5 cut(s) 341, 417, 705, 726, 819
FokI GGATG 1 cut(s) 523
Fsp4HI GCNGC 5 cut(s) 341, 417, 705, 726, 819
FspBI CTAG 3 cut(s) 329, 441, 738
GluI GCNGC 5 cut(s) 341, 417, 705, 726, 819
HaeIII GGCC 1 cut(s) 118
Hin1II CATG 2 cut(s) 147, 669
HincII GTYRAC 3 cut(s) 799, 826, 891
HindII GTYRAC 3 cut(s) 799, 826, 891
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 3 cut(s) 100, 410, 640
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 5 cut(s) 54, 396, 799, 826, 891
Hpy188I TCNGA 4 cut(s) 249, 526, 622, 637
Hpy188III TCNNGA 2 cut(s) 543, 659
Hpy8I GTNNAC 5 cut(s) 54, 396, 799, 826, 891
HpyAV CCTTC 2 cut(s) 5, 446
HpyCH4III ACNGT 3 cut(s) 245, 888, 929
HpyCH4IV ACGT 4 cut(s) 37, 222, 795, 893
HpyCH4V TGCA 9 cut(s) 80, 396, 553, 572, 626, 704, 821, 901, 912
HpyF3I CTNAG 5 cut(s) 227, 412, 506, 636, 716
HpySE526I ACGT 4 cut(s) 37, 222, 795, 893
Hsp92II CATG 2 cut(s) 147, 669
Ksp22I TGATCA 4 cut(s) 262, 310, 385, 877
Kzo9I GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
Lsp1109I GCAGC 4 cut(s) 352, 428, 716, 805
LweI GCATC 1 cut(s) 613
MaeI CTAG 3 cut(s) 329, 441, 738
MaeII ACGT 4 cut(s) 37, 222, 795, 893
MaeIII GTNAC 2 cut(s) 580, 809
MalI GATC 7 cut(s) 183, 264, 291, 312, 387, 657, 879
MboI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
MboII GAAGA 2 cut(s) 299, 663
MflI RGATCY 2 cut(s) 181, 289
MhlI GDGCHC 2 cut(s) 337, 398
MluCI AATT 3 cut(s) 559, 763, 844
MlyI GAGTC 2 cut(s) 404, 649
MseI TTAA 3 cut(s) 93, 168, 848
MspA1I CMGCKG 2 cut(s) 391, 419
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 159
NdeII GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
NlaIII CATG 2 cut(s) 147, 669
NmeAIII GCCGAG 1 cut(s) 369
NspI RCATGY 1 cut(s) 669
PciI ACATGT 1 cut(s) 665
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 5 cut(s) 342, 418, 706, 727, 820
PleI GAGTC 2 cut(s) 404, 648
PpsI GAGTC 2 cut(s) 404, 648
PscI ACATGT 1 cut(s) 665
Psp1406I AACGTT 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 216
PspEI GGTNACC 1 cut(s) 580
PspGI CCWGG 1 cut(s) 216
PstI CTGCAG 1 cut(s) 823
PstNI CAGNNNCTG 2 cut(s) 419, 498
PsuI RGATCY 2 cut(s) 181, 289
PvuII CAGCTG 2 cut(s) 391, 419
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
SaqAI TTAA 3 cut(s) 93, 168, 848
SatI GCNGC 5 cut(s) 341, 417, 705, 726, 819
Sau3AI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
SchI GAGTC 2 cut(s) 404, 649
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 2 cut(s) 337, 398
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 3 cut(s) 241, 819, 925
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 3 cut(s) 559, 763, 844
SsiI CCGC 2 cut(s) 157, 726
SspI AATATT 2 cut(s) 151, 402
SspMI CTAG 3 cut(s) 329, 441, 738
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 3 cut(s) 245, 888, 929
TaiI ACGT 4 cut(s) 40, 225, 798, 896
TaqI TCGA 3 cut(s) 41, 132, 303
TasI AATT 3 cut(s) 559, 763, 844
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 3 cut(s) 93, 168, 848
Tru9I TTAA 3 cut(s) 93, 168, 848
TscAI CASTG 1 cut(s) 514
TseI GCWGC 4 cut(s) 340, 416, 704, 818
TspDTI ATGAA 3 cut(s) 24, 465, 850
TspGWI ACGGA 3 cut(s) 194, 282, 491
TspRI CASTG 1 cut(s) 514
VneI GTGCAC 1 cut(s) 394
XagI CCTNNNNNAGG 1 cut(s) 552
XapI RAATTY 1 cut(s) 559
XceI RCATGY 1 cut(s) 669
XmaJI CCTAGG 1 cut(s) 328
XspI CTAG 3 cut(s) 329, 441, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.