Rmu_sc0005455.1_g000002
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005455.1
OG0014676
Physical Location & Seq
Reverse (-)
1239 .. 2277
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005455.1_g000002.1.cds

Sequence Viewer

Length: 933 bp
atggataatgaaggtagtgttcaacctaagcaagaacgttcgaggactaggtggacaccggcccttgacaagacatttgcagacttggttattaagcagattcaattggggaacaggccaaacaatgtttttgacaagaaaacgtggaatagtatccgcgatgagtttaacaagcaaacagatctcaacttcaacaacaatcaattgaggaagcacctggatgttctaaggacgcgcttctacaatctcaagttggcttatgatcaaactaatgactatgctttggaagatccgtgttgtatcgagtttgatcatctatgggcagacctaggggtacagcagccgaggcctgaaactactaaagtgaaggattgccccatatatgatcagctgtgcacaatattcacagactcagcagccgatgggaagtacgctgaatctagtcattatgaagggttggacaaatctgcaggaacggacaatgtatttctgagttcctgtcctgacagtggagcccctcagtctgaaaacccaccatcctcaagacctgtgcaaggaaatgcattattagcagagaaggtggccaaggttgtagtagagagaaaaaggaagcgaacgtctgatacacagtcttctgagggtcaaagcagaagggatcaagaaacatgtgatgccatggcaaaagccctacaagatatgattgcagcctcaaagctgaggacagcggcaacaatgcctcgagacgacaagtttagcataactaattgtataagagcactggatgagataaaagacattgacgaacagatttactttgctgcagttgacctgtttgataaccctaatttaagggagacattcatctctctaaaaggtgatcaaatacggttgagatggttgcaagggaagtgcagtaaagctgcctacagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

310

Amino Acids

35.25

Weight (kDa)

5.79

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38651 FvH4_2g38651 FvH4_2g38651
malus_domestica MD08G1014200.v1.1
prunus_persica Prupe.1G367200_v2.0.a1 Prupe.1G367200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0302661
rosa_laevigata RLG00000011150
rosa_multiflora Rmu_sc0005455.1_g000002
rosa_roxburghii Rroxscaffold_7G00165460
rosa_rugosa Rorug06G0315800 Rorug06G0315900
rosa_samantha Rh6AG429200 Rh6BG473300 Rh6CG441500 Rh6DG428300
rosa_wichuraiana Rw6G037150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 159, 235
AciI CCGC 2 cut(s) 157, 725
AclI AACGTT 1 cut(s) 37
AclWI GGATC 2 cut(s) 284, 663
AcoI YGGCCR 1 cut(s) 582
AfaI GTAC 2 cut(s) 336, 431
AfiI CCNNNNNNNGG 2 cut(s) 509, 554
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 3 cut(s) 23, 104, 193
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 3 cut(s) 391, 715, 920
AluI AGCT 3 cut(s) 391, 715, 920
Alw21I GWGCWC 2 cut(s) 398, 778
Alw26I GTCTC 2 cut(s) 735, 848
Alw44I GTGCAC 1 cut(s) 394
AlwI GGATC 2 cut(s) 284, 663
Ama87I CYCGRG 1 cut(s) 738
AoxI GGCC 4 cut(s) 60, 116, 347, 582
ApaLI GTGCAC 1 cut(s) 394
ApeKI GCWGC 5 cut(s) 340, 416, 704, 818, 920
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspA2I CCTAGG 1 cut(s) 328
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 887
AvaI CYCGRG 1 cut(s) 738
AvrII CCTAGG 1 cut(s) 328
BaeGI GKGCMC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 584
BanII GRGCYC 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 2 cut(s) 398, 778
BbvCI CCTCAGC 1 cut(s) 716
BbvI GCAGC 5 cut(s) 352, 428, 716, 805, 907
BccI CCATC 3 cut(s) 416, 544, 888
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 164
BclI TGATCA 4 cut(s) 262, 310, 385, 877
BcoDI GTCTC 2 cut(s) 735, 848
BfaI CTAG 3 cut(s) 48, 329, 441
BfmI CTRYAG 3 cut(s) 468, 819, 925
BfuI GTATCC 1 cut(s) 164
BglII AGATCT 1 cut(s) 181
BisI GCNGC 6 cut(s) 341, 417, 705, 726, 819, 921
BlnI CCTAGG 1 cut(s) 328
BlsI GCNGC 6 cut(s) 342, 418, 706, 727, 820, 922
Bme1390I CCNGG 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 738
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 514
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 661
BpiI GAAGAC 1 cut(s) 624
Bpu10I CCTNAGC 2 cut(s) 27, 716
BpuEI CTTGAG 2 cut(s) 233, 526
BsaJI CCNNGG 4 cut(s) 328, 344, 585, 675
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 554
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 783
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 4 cut(s) 328, 344, 585, 675
BseGI GGATG 3 cut(s) 226, 536, 787
BseLI CCNNNNNNNGG 2 cut(s) 509, 554
BseMII CTCAG 5 cut(s) 426, 482, 533, 627, 707
BseNI ACTGG 1 cut(s) 783
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 5 cut(s) 352, 428, 716, 805, 907
BsgI GTGCAG 1 cut(s) 931
Bsh1236I CGCG 2 cut(s) 159, 235
BshFI GGCC 4 cut(s) 62, 118, 349, 584
BsiHKAI GWGCWC 2 cut(s) 398, 778
BsiHKCI CYCGRG 1 cut(s) 738
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 509, 554
BsmAI GTCTC 2 cut(s) 735, 848
BsmBI CGTCTC 1 cut(s) 735
BsnI GGCC 4 cut(s) 62, 118, 349, 584
BsoBI CYCGRG 1 cut(s) 738
Bsp1286I GDGCHC 3 cut(s) 398, 517, 778
Bsp143I GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 2 cut(s) 157, 725
BspANI GGCC 4 cut(s) 62, 118, 349, 584
BspCNI CTCAG 5 cut(s) 425, 483, 532, 628, 708
BspFNI CGCG 2 cut(s) 159, 235
BspLI GGNNCC 1 cut(s) 514
BspMAI CTGCAG 2 cut(s) 472, 823
BspPI GGATC 2 cut(s) 284, 663
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 1 cut(s) 783
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 4 cut(s) 328, 344, 585, 675
BssMI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
BssT1I CCWWGG 3 cut(s) 328, 585, 675
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 4 cut(s) 509, 630, 888, 929
BstDEI CTNAG 7 cut(s) 27, 227, 412, 491, 519, 636, 716
BstDSI CCRYGG 1 cut(s) 675
BstENI CCTNNNNNAGG 1 cut(s) 552
BstF5I GGATG 3 cut(s) 226, 536, 787
BstFNI CGCG 2 cut(s) 159, 235
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 7 cut(s) 184, 265, 292, 313, 388, 658, 880
BstMAI GTCTC 2 cut(s) 735, 848
BstMBI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
BstMWI GCNNNNNNNGC 2 cut(s) 346, 569
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 3 cut(s) 468, 819, 925
BstSLI GKGCMC 1 cut(s) 398
BstUI CGCG 2 cut(s) 159, 235
BstV1I GCAGC 5 cut(s) 352, 428, 716, 805, 907
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 2 cut(s) 181, 289
BstYI RGATCY 2 cut(s) 181, 289
BsuI GTATCC 1 cut(s) 164
BsuRI GGCC 4 cut(s) 62, 118, 349, 584
BtgI CCRYGG 1 cut(s) 675
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 3 cut(s) 226, 536, 787
BtsIMutI CAGTG 2 cut(s) 514, 776
CfoI GCGC 1 cut(s) 237
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 335, 430
CviAII CATG 2 cut(s) 666, 676
CviQI GTAC 2 cut(s) 335, 430
DdeI CTNAG 7 cut(s) 27, 227, 412, 491, 519, 636, 716
DpnI GATC 7 cut(s) 183, 264, 291, 312, 387, 657, 879
DpnII GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
EaeI YGGCCR 1 cut(s) 582
Eco130I CCWWGG 3 cut(s) 328, 585, 675
Eco147I AGGCCT 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 738
EcoNI CCTNNNNNAGG 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 3 cut(s) 328, 585, 675
EcoT22I ATGCAT 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 3 cut(s) 328, 585, 675
Esp3I CGTCTC 1 cut(s) 735
FaeI CATG 2 cut(s) 669, 679
FatI CATG 2 cut(s) 665, 675
FbaI TGATCA 4 cut(s) 262, 310, 385, 877
Fnu4HI GCNGC 6 cut(s) 341, 417, 705, 726, 819, 921
FokI GGATG 3 cut(s) 233, 523, 794
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 6 cut(s) 341, 417, 705, 726, 819, 921
FspBI CTAG 3 cut(s) 48, 329, 441
GlaI GCGC 1 cut(s) 236
GluI GCNGC 6 cut(s) 341, 417, 705, 726, 819, 921
HaeIII GGCC 4 cut(s) 62, 118, 349, 584
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 669, 679
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 826
HindII GTYRAC 1 cut(s) 826
HinfI GANTC 3 cut(s) 100, 410, 437
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 887
Hpy166II GTNNAC 3 cut(s) 54, 396, 826
Hpy188I TCNGA 4 cut(s) 492, 526, 622, 637
Hpy188III TCNNGA 4 cut(s) 503, 543, 659, 740
Hpy8I GTNNAC 3 cut(s) 54, 396, 826
HpyAV CCTTC 5 cut(s) 5, 361, 446, 571, 645
HpyCH4III ACNGT 4 cut(s) 509, 630, 888, 929
HpyCH4IV ACGT 3 cut(s) 37, 143, 617
HpyCH4V TGCA 9 cut(s) 80, 396, 470, 553, 563, 704, 821, 901, 912
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 569
HpyF3I CTNAG 7 cut(s) 27, 227, 412, 491, 519, 636, 716
HpySE526I ACGT 3 cut(s) 37, 143, 617
Hsp92II CATG 2 cut(s) 669, 679
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 4 cut(s) 262, 310, 385, 877
Kzo9I GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
LmnI GCTCC 1 cut(s) 512
Lsp1109I GCAGC 5 cut(s) 352, 428, 716, 805, 907
LweI GCATC 1 cut(s) 661
MaeI CTAG 3 cut(s) 48, 329, 441
MaeII ACGT 3 cut(s) 37, 143, 617
MalI GATC 7 cut(s) 183, 264, 291, 312, 387, 657, 879
MboI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
MboII GAAGA 2 cut(s) 299, 624
MfeI CAATTG 2 cut(s) 104, 203
MflI RGATCY 2 cut(s) 181, 289
MhlI GDGCHC 3 cut(s) 398, 517, 778
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 4 cut(s) 104, 203, 763, 844
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 9 cut(s) 36, 201, 339, 528, 550, 631, 711, 718, 747
Mox20I TGGCCA 1 cut(s) 584
Mph1103I ATGCAT 1 cut(s) 565
MscI TGGCCA 1 cut(s) 584
MseI TTAA 3 cut(s) 93, 168, 848
MslI CAYNNNNRTG 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 2 cut(s) 391, 725
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 2 cut(s) 104, 203
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 2 cut(s) 159, 235
MwoI GCNNNNNNNGC 2 cut(s) 346, 569
NcoI CCATGG 1 cut(s) 675
NdeII GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
NlaIII CATG 2 cut(s) 669, 679
NlaIV GGNNCC 1 cut(s) 514
NmeAIII GCCGAG 1 cut(s) 369
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 1 cut(s) 669
PaeR7I CTCGAG 1 cut(s) 738
PceI AGGCCT 1 cut(s) 349
PciI ACATGT 1 cut(s) 665
PfeI GAWTC 2 cut(s) 100, 437
PkrI GCNGC 6 cut(s) 342, 418, 706, 727, 820, 922
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PscI ACATGT 1 cut(s) 665
Psp1406I AACGTT 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 1 cut(s) 61
PsrI GAACNNNNNNTAC 2 cut(s) 607, 639
PstI CTGCAG 2 cut(s) 472, 823
PsuI RGATCY 2 cut(s) 181, 289
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 2 cut(s) 336, 431
RsaNI GTAC 2 cut(s) 335, 430
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 3 cut(s) 93, 168, 848
SatI GCNGC 6 cut(s) 341, 417, 705, 726, 819, 921
Sau3AI GATC 7 cut(s) 181, 262, 289, 310, 385, 655, 877
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 3 cut(s) 398, 517, 778
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 3 cut(s) 468, 819, 925
Sfr274I CTCGAG 1 cut(s) 738
SlaI CTCGAG 1 cut(s) 738
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 3 cut(s) 248, 541, 738
SmoI CTYRAG 3 cut(s) 248, 541, 738
Sse9I AATT 4 cut(s) 104, 203, 763, 844
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 2 cut(s) 157, 725
SspI AATATT 1 cut(s) 402
SspMI CTAG 3 cut(s) 48, 329, 441
StuI AGGCCT 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 3 cut(s) 328, 585, 675
TaaI ACNGT 4 cut(s) 509, 630, 888, 929
TaiI ACGT 3 cut(s) 40, 146, 620
TaqI TCGA 3 cut(s) 41, 303, 739
TasI AATT 4 cut(s) 104, 203, 763, 844
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 2 cut(s) 100, 437
Tru1I TTAA 3 cut(s) 93, 168, 848
Tru9I TTAA 3 cut(s) 93, 168, 848
TscAI CASTG 2 cut(s) 514, 783
TseI GCWGC 5 cut(s) 340, 416, 704, 818, 920
TspDTI ATGAA 3 cut(s) 24, 465, 850
TspGWI ACGGA 2 cut(s) 282, 491
TspRI CASTG 2 cut(s) 514, 783
VneI GTGCAC 1 cut(s) 394
XagI CCTNNNNNAGG 1 cut(s) 552
XceI RCATGY 1 cut(s) 669
XhoI CTCGAG 1 cut(s) 738
XmaJI CCTAGG 1 cut(s) 328
XspI CTAG 3 cut(s) 48, 329, 441
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.