Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0020746

Physical Location & Seq

Genomic Coordinates Forward (+)

8812570 .. 8813749

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG118100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGATTTTGACCTCATTTCTAAGAGCATTGAGAAAGCGAAAAACTCTAGACCCTCCTCCGCCGCCGAGCCCACCATTGTTCTCAAGGGCTTGATTAAGCCCGCCGCTGGCTCGATCGCCGAGGCAGTGAACGGAGCCAGAGAGCTGGACTCCGATGACGACGAAGTGCAAGGGAACCAGGATAGGGTTGATGCCGAGTCACGATTGGCTTCCATGGGGATCGACAAGGATAGATCGGAGTATCCTGATCAAGCCACCATAGAAGCCATTCGGAAGAAAATGGAGTGGGTTCCGGAAGTCCAAACCCCCCGCGTTGGATTTCATTTCATTAGATTCGGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

114

Amino Acids

12.59

Weight (kDa)

4.85

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020746)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004897.1_g000010
rosa_roxburghii	Rroxscaffold_6G00412870
rosa_samantha	Rh4BG397200 Rh4CG412400 Rh6DG497800 Rh7BG118100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	312
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	5 cut(s)	60, 63, 102, 105, 310
AclWI	GGATC	1 cut(s)	227
AfiI	CCNNNNNNNGG	3 cut(s)	107, 184, 314
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
AlwI	GGATC	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	252
BclI	TGATCA	1 cut(s)	247
BfaI	CTAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	63, 105
BlsI	GCNGC	2 cut(s)	64, 106
Bme1390I	CCNGG	1 cut(s)	179
BmiI	GGNNCC	3 cut(s)	136, 176, 291
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpuEI	CTTGAG	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	120, 213
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 184, 314
BseAI	TCCGGA	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	120, 213
BseLI	CCNNNNNNNGG	3 cut(s)	107, 184, 314
BseRI	GAGGAG	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	293
BslI	CCNNNNNNNGG	3 cut(s)	107, 184, 314
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	114, 219, 233, 247
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	5 cut(s)	60, 63, 102, 105, 310
BspEI	TCCGGA	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	136, 176, 291
BspPI	GGATC	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	120, 213
BssMI	GATC	4 cut(s)	114, 219, 233, 247
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	102, 109
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	4 cut(s)	117, 222, 236, 250
BstMBI	GATC	4 cut(s)	114, 219, 233, 247
BstMCI	CGRYCG	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	102, 109
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	9 cut(s)	70, 90, 100, 111, 137, 145, 209, 254, 266
CviKI_1	RGCY	9 cut(s)	70, 90, 100, 111, 137, 145, 209, 254, 266
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	4 cut(s)	116, 221, 235, 249
DpnII	GATC	4 cut(s)	114, 219, 233, 247
EciI	GGCGGA	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	217
FaiI	YATR	2 cut(s)	215, 260
FatI	CATG	1 cut(s)	213
FauI	CCCGC	2 cut(s)	109, 317
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	63, 105
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	63, 105
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	2 cut(s)	63, 105
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	3 cut(s)	149, 197, 333
HpaII	CCGG	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	154, 238, 273
Hpy188III	TCNNGA	4 cut(s)	48, 201, 245, 293
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	217
Kpn2I	TCCGGA	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	114, 219, 233, 247
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	7 cut(s)	93, 131, 151, 164, 191, 258, 306
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	4 cut(s)	116, 221, 235, 249
MboI	GATC	4 cut(s)	114, 219, 233, 247
MboII	GAAGA	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	143, 206
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	4 cut(s)	23, 64, 67, 115
MroI	TCCGGA	1 cut(s)	292
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	4 cut(s)	114, 219, 233, 247
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	3 cut(s)	136, 176, 291
NmeAIII	GCCGAG	3 cut(s)	91, 145, 220
NmuCI	GTSAC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	64, 106
Ple19I	CGATCG	1 cut(s)	117
PleI	GAGTC	2 cut(s)	143, 205
PpsI	GAGTC	2 cut(s)	143, 205
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	136, 176, 291
PvuI	CGATCG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	2 cut(s)	63, 105
Sau3AI	GATC	4 cut(s)	114, 219, 233, 247
SchI	GAGTC	2 cut(s)	143, 206
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	2 cut(s)	15, 147
SfaNI	GCATC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SsiI	CCGC	5 cut(s)	60, 63, 102, 105, 310
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	2 cut(s)	113, 222
TauI	GCSGC	2 cut(s)	65, 107
TfiI	GAWTC	1 cut(s)	333
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	311, 316
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	132
XbaI	TCTAGA	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.