Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0020746

Physical Location & Seq

Genomic Coordinates Reverse (-)

35341847 .. 35343604

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGGCCGAGGGTTGCTGACGTGGGCGGAAATCAAAAGCTGGGCTGGTTTGGCATCTCAGTGATATCGGAGATCTGGTTAGGACACGTGCCCGTGTTTGGCGACAAAGGAAAGGGCAGGTGTCTTTTTCGAGGACCTACTATTGGCTCACCATTTGGTCGGCACGGATTGAAACGACGGTGGGAGCGAGTTAATTCCAGCTCTAGACCCTCCTCCGCCGCCGAGCCCACCATTGTTCTCAAGGGCTTGATTAAGCCCGCCGCCGGCTCGATCGCCGAGGCAGTGAACCGAGCCAGAGAGCTGGACTCCGATGACGACGAAGTGCAAGGGAACAAGGATAGGGTTGATGCCGAGTCACGATTGGCTTCCATGGGGATCGACAGGGATAGGTCGGAGTATCCTGATCAGGCCACCATAGAAGCCATTCGGAAGAAAAGGGAGTGGGCTCCGGAAGTCCAAACCTCCCGCGTTGGATTTCATTTCATTGGATTCGGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

166

Amino Acids

18.23

Weight (kDa)

9.2

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020746)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004897.1_g000010
rosa_roxburghii	Rroxscaffold_6G00412870
rosa_samantha	Rh4BG397200 Rh4CG412400 Rh6DG497800 Rh7BG118100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	108
Acc36I	ACCTGC	1 cut(s)	108
AccII	CGCG	1 cut(s)	468
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	6 cut(s)	27, 216, 219, 258, 261, 466
AclWI	GGATC	1 cut(s)	383
AcvI	CACGTG	1 cut(s)	88
AfiI	CCNNNNNNNGG	3 cut(s)	98, 143, 263
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	172
AjiI	CACGTC	1 cut(s)	22
AluBI	AGCT	3 cut(s)	40, 201, 301
AluI	AGCT	3 cut(s)	40, 201, 301
AlwI	GGATC	1 cut(s)	383
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	2 cut(s)	5, 408
Asp700I	GAANNNNTTC	1 cut(s)	423
AspS9I	GGNCC	2 cut(s)	5, 134
AsuHPI	GGTGA	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	228, 448
BbrPI	CACGTG	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	403
BfaI	CTAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	408
BglII	AGATCT	1 cut(s)	72
BisI	GCNGC	2 cut(s)	219, 261
BlsI	GCNGC	2 cut(s)	220, 262
Bme18I	GGWCC	1 cut(s)	134
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	5, 134
BmiI	GGNNCC	2 cut(s)	6, 447
BmsI	GCATC	2 cut(s)	63, 337
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuEI	CTTGAG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	8, 276, 369
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 143, 263
Bse118I	RCCGGY	1 cut(s)	263
BseAI	TCCGGA	1 cut(s)	448
BseDI	CCNNGG	3 cut(s)	8, 276, 369
BseLI	CCNNNNNNNGG	3 cut(s)	98, 143, 263
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	93
BseYI	CCCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	7, 410
BsiEI	CGRYCG	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	264, 449
BslI	CCNNNNNNNGG	3 cut(s)	98, 143, 263
BsnI	GGCC	2 cut(s)	7, 410
Bsp1286I	GDGCHC	3 cut(s)	93, 228, 448
Bsp13I	TCCGGA	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	72, 270, 375, 403
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	6 cut(s)	27, 216, 219, 258, 261, 466
BspANI	GGCC	2 cut(s)	7, 410
BspCNI	CTCAG	1 cut(s)	71
BspEI	TCCGGA	1 cut(s)	448
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	6, 447
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	383
BsrFI	RCCGGY	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	3 cut(s)	8, 276, 369
BssMI	GATC	4 cut(s)	72, 270, 375, 403
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	258, 265
BstDEI	CTNAG	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	369
BstFNI	CGCG	1 cut(s)	468
BstKTI	GATC	4 cut(s)	75, 273, 378, 406
BstMBI	GATC	4 cut(s)	72, 270, 375, 403
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	93
BstUI	CGCG	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	7, 410
BtgI	CCRYGG	1 cut(s)	369
BtrI	CACGTC	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	2 cut(s)	66, 288
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	258, 265
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	5, 134
CviAII	CATG	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	4 cut(s)	74, 272, 377, 405
DpnII	GATC	4 cut(s)	72, 270, 375, 403
EciI	GGCGGA	2 cut(s)	42, 205
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	2 cut(s)	228, 448
Eco32I	GATATC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	134
Eco72I	CACGTG	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	369
EcoT38I	GRGCYC	2 cut(s)	228, 448
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	1 cut(s)	373
FaiI	YATR	2 cut(s)	371, 416
FatI	CATG	1 cut(s)	369
FauI	CCCGC	2 cut(s)	265, 473
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	219, 261
FriOI	GRGCYC	2 cut(s)	228, 448
Fsp4HI	GCNGC	2 cut(s)	219, 261
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	2 cut(s)	219, 261
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	7, 410
HapII	CCGG	2 cut(s)	264, 449
Hin1II	CATG	1 cut(s)	373
HinfI	GANTC	3 cut(s)	305, 353, 489
HpaII	CCGG	2 cut(s)	264, 449
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	4 cut(s)	70, 310, 394, 429
Hpy188III	TCNNGA	4 cut(s)	204, 357, 401, 449
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	2 cut(s)	180, 320
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	2 cut(s)	21, 87
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	58
HpySE526I	ACGT	2 cut(s)	21, 87
Hsp92II	CATG	1 cut(s)	373
Kpn2I	TCCGGA	1 cut(s)	448
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	72, 270, 375, 403
LmnI	GCTCC	2 cut(s)	184, 451
LweI	GCATC	2 cut(s)	63, 337
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	2 cut(s)	21, 87
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	4 cut(s)	74, 272, 377, 405
MboI	GATC	4 cut(s)	72, 270, 375, 403
MboII	GAAGA	1 cut(s)	442
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	3 cut(s)	93, 228, 448
MluCI	AATT	1 cut(s)	193
MlyI	GAGTC	2 cut(s)	299, 362
MmeI	TCCRAC	2 cut(s)	372, 451
MnlI	CCTC	6 cut(s)	3, 125, 220, 223, 271, 472
MroI	TCCGGA	1 cut(s)	448
MroNI	GCCGGC	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	2 cut(s)	192, 252
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	2 cut(s)	264, 449
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	51
NaeI	GCCGGC	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	4 cut(s)	72, 270, 375, 403
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	2 cut(s)	6, 447
NmeAIII	GCCGAG	4 cut(s)	33, 247, 301, 376
NmuCI	GTSAC	1 cut(s)	354
PaqCI	CACCTGC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PdiI	GCCGGC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	489
PkrI	GCNGC	2 cut(s)	220, 262
Ple19I	CGATCG	1 cut(s)	273
PleI	GAGTC	2 cut(s)	299, 361
PmaCI	CACGTG	1 cut(s)	88
PmlI	CACGTG	1 cut(s)	88
PpsI	GAGTC	2 cut(s)	299, 361
Ppu21I	YACGTR	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
PspCI	CACGTG	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	40
PspN4I	GGNNCC	2 cut(s)	6, 447
PspPI	GGNCC	2 cut(s)	5, 134
PspPPI	RGGWCCY	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	72
PvuI	CGATCG	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	192, 252
SatI	GCNGC	2 cut(s)	219, 261
Sau3AI	GATC	4 cut(s)	72, 270, 375, 403
Sau96I	GGNCC	2 cut(s)	5, 134
SchI	GAGTC	2 cut(s)	299, 362
SduI	GDGCHC	3 cut(s)	93, 228, 448
SetI	ASST	9 cut(s)	24, 42, 90, 122, 139, 203, 303, 392, 464
SfaNI	GCATC	2 cut(s)	63, 337
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	193
SsiI	CCGC	6 cut(s)	27, 216, 219, 258, 261, 466
SspMI	CTAG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	2 cut(s)	24, 90
TaqI	TCGA	3 cut(s)	130, 269, 378
TasI	AATT	1 cut(s)	193
TauI	GCSGC	2 cut(s)	221, 263
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	2 cut(s)	192, 252
Tru9I	TTAA	2 cut(s)	192, 252
TscAI	CASTG	2 cut(s)	66, 288
TseFI	GTSAC	1 cut(s)	354
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	467, 472
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	66, 288
VpaK11BI	GGWCC	1 cut(s)	134
XbaI	TCTAGA	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.