Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0020746

Physical Location & Seq

Genomic Coordinates Reverse (-)

65744378 .. 65745328

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG412400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCAAGCAGCCAGCTCTAGACCCTTCTCCGCCGCCGAGCCCACCATTGTTCTCAAGGGCTTGATTAAGCCCGCCGCCGGCTCGATCGCCGAGGCAGTGAACGGAGCCAGAGAGCTGGACTCCGATGACGACGAAGTGCAAGGGAACCAGGGTAAGGTTGATGCCGAGTCACGATTGGCTTCCATGGGGATCGACAGGGATAGGTCGGAGTATCCTGATCAAGCCACCATAGAAGCCATTCGGAAGAAAAGGGAGTGGGCTCCGGAAGTCCAAACCCCCCGCGTTGGATTTCATTTCATTGGATTCGGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

104

Amino Acids

11.26

Weight (kDa)

4.89

Isoelectric Point (pI)

23.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020746)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004897.1_g000010
rosa_roxburghii	Rroxscaffold_6G00412870
rosa_samantha	Rh4BG397200 Rh4CG412400 Rh6DG497800 Rh7BG118100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	5 cut(s)	30, 33, 72, 75, 280
AclWI	GGATC	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	77, 154, 284
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	15, 115
AluI	AGCT	2 cut(s)	15, 115
AlwI	GGATC	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	237
BanII	GRGCYC	2 cut(s)	42, 262
BbvI	GCAGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	217
BfaI	CTAG	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	3 cut(s)	9, 33, 75
BlsI	GCNGC	3 cut(s)	10, 34, 76
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	3 cut(s)	106, 146, 261
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpuEI	CTTGAG	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	90, 148, 183
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 154, 284
Bse118I	RCCGGY	1 cut(s)	77
BseAI	TCCGGA	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	90, 148, 183
BseLI	CCNNNNNNNGG	3 cut(s)	77, 154, 284
BseXI	GCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	87
BsiEI	CGRYCG	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	78, 263
BslI	CCNNNNNNNGG	3 cut(s)	77, 154, 284
Bsp1286I	GDGCHC	2 cut(s)	42, 262
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	84, 189, 217
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	5 cut(s)	30, 33, 72, 75, 280
BspEI	TCCGGA	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	106, 146, 261
BspPI	GGATC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	90, 148, 183
BssMI	GATC	3 cut(s)	84, 189, 217
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	149
BstC8I	GCNNGC	4 cut(s)	6, 13, 72, 79
BstDSI	CCRYGG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	87, 192, 220
BstMBI	GATC	3 cut(s)	84, 189, 217
BstMCI	CGRYCG	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	4 cut(s)	6, 13, 72, 79
Cfr10I	RCCGGY	1 cut(s)	77
CviAII	CATG	1 cut(s)	184
DpnI	GATC	3 cut(s)	86, 191, 219
DpnII	GATC	3 cut(s)	84, 189, 217
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	2 cut(s)	42, 262
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	2 cut(s)	42, 262
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	187
FaiI	YATR	2 cut(s)	185, 230
FatI	CATG	1 cut(s)	183
FauI	CCCGC	2 cut(s)	79, 287
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	9, 33, 75
FriOI	GRGCYC	2 cut(s)	42, 262
Fsp4HI	GCNGC	3 cut(s)	9, 33, 75
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	3 cut(s)	9, 33, 75
HapII	CCGG	2 cut(s)	78, 263
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	3 cut(s)	119, 167, 303
HpaII	CCGG	2 cut(s)	78, 263
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	124, 208, 243
Hpy188III	TCNNGA	4 cut(s)	18, 171, 215, 263
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	34
HpyCH4V	TGCA	2 cut(s)	4, 139
Hsp92II	CATG	1 cut(s)	187
Kpn2I	TCCGGA	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	84, 189, 217
LmnI	GCTCC	2 cut(s)	104, 265
LpnPI	CCDG	9 cut(s)	25, 91, 101, 121, 134, 161, 181, 228, 276
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	3 cut(s)	86, 191, 219
MboI	GATC	3 cut(s)	84, 189, 217
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	42, 262
MlyI	GAGTC	2 cut(s)	113, 176
MmeI	TCCRAC	2 cut(s)	186, 265
MnlI	CCTC	1 cut(s)	85
MroI	TCCGGA	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	1 cut(s)	66
MspI	CCGG	2 cut(s)	78, 263
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	282
NaeI	GCCGGC	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	84, 189, 217
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	3 cut(s)	106, 146, 261
NmeAIII	GCCGAG	3 cut(s)	61, 115, 190
NmuCI	GTSAC	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	3 cut(s)	10, 34, 76
Ple19I	CGATCG	1 cut(s)	87
PleI	GAGTC	2 cut(s)	113, 175
PpsI	GAGTC	2 cut(s)	113, 175
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	106, 146, 261
PvuI	CGATCG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	3 cut(s)	9, 33, 75
Sau3AI	GATC	3 cut(s)	84, 189, 217
SchI	GAGTC	2 cut(s)	113, 176
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	42, 262
SetI	ASST	4 cut(s)	17, 117, 159, 206
SfaNI	GCATC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SsiI	CCGC	5 cut(s)	30, 33, 72, 75, 280
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	183
TaqI	TCGA	2 cut(s)	83, 192
TauI	GCSGC	2 cut(s)	35, 77
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	281, 286
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	102
XbaI	TCTAGA	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.