Rh6DG497800
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0020746
Physical Location & Seq
Forward (+)
65506070 .. 65514608
8539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG497800.1

Sequence Viewer

Length: 759 bp
ATGGACTACTGCAACAGCTGGTCATCATCTTCTCCACACTTGACCAGCTGCTTATCAGGATATCGAGCTAATATAGGTATAAATAGGCACGATCAGATCTCTCGTATCAATAATGGCGGCCTTCAAGAAACAAATTATAACAAGGGAGTGGGATGGAGTGAGGAGGAGCACCGGAAGTTTCTTGAGGGGATTGAAACGCTGGGTAAGGGTGACTGGAGGGGCATCTCTAAACACTATGTCACCACAAGATCCCCAACCCAGGTTGCCAGTCATGCCCAAAAATATTTTCTCAGACTTCAAAATAGTACCACCGCCAACACTGCAACCATCAACAACCTCGACTTCAACTTCGACCCCCACAAGAAAAGATGCCGAGTTCGTCCCAGCCTTTTAGATTCGACAGGCAGACCGTCCGTACGGTACTGCATTTCTCATTTTCTCGATCTTTGTCTGGCCAGCTCTAGACCCTCCTCCGCCGCCGAGCCCACCATTGTTCTCAAGGGCTTGATTAAGCCCGCCGCCGGCTCGATCGCCGAGGCAGTGAACGGAGCCAGAGAGCTGGACTCCGATGACGACGAAGTGCAAGGGAACCAGGGTAGGGTTGATGCCGAGTCACGATTGGCTTCCATGGGGATCGACAGGGATAGGTCGGAGTATCCTGATCAAGCCACCATAGAAGCCATTCGGAAGAAAAGGGAGTGGGCTCCGGAAGTCCAAACCCCCCGCGTTGGATTTCATTTCATTGGATTCAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

252

Amino Acids

28.17

Weight (kDa)

8.26

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 52 - 96 2.1e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020746)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004897.1_g000010
rosa_roxburghii Rroxscaffold_6G00412870
rosa_samantha Rh4BG397200 Rh4CG412400 Rh6DG497800 Rh7BG118100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AccII CGCG 1 cut(s) 726
AccIII TCCGGA 1 cut(s) 706
AciI CCGC 7 cut(s) 117, 312, 474, 477, 516, 519, 724
AclWI GGATC 2 cut(s) 243, 641
AcoI YGGCCR 1 cut(s) 453
AfaI GTAC 3 cut(s) 307, 417, 422
AfiI CCNNNNNNNGG 4 cut(s) 259, 521, 598, 728
AgsI TTSAA 4 cut(s) 125, 194, 299, 346
AjnI CCWGG 2 cut(s) 258, 591
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 5 cut(s) 18, 48, 68, 459, 559
AluI AGCT 5 cut(s) 18, 48, 68, 459, 559
Alw21I GWGCWC 1 cut(s) 171
AlwI GGATC 2 cut(s) 243, 641
Aor13HI TCCGGA 1 cut(s) 706
AoxI GGCC 2 cut(s) 118, 453
ApeKI GCWGC 1 cut(s) 48
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp700I GAANNNNTTC 1 cut(s) 681
AsuHPI GGTGA 2 cut(s) 221, 232
BalI TGGCCA 1 cut(s) 455
BanII GRGCYC 2 cut(s) 486, 706
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 147, 335
BciT130I CCWGG 2 cut(s) 260, 593
BciVI GTATCC 1 cut(s) 666
BclI TGATCA 1 cut(s) 661
BfaI CTAG 1 cut(s) 462
BfuI GTATCC 1 cut(s) 666
BglII AGATCT 1 cut(s) 96
BisI GCNGC 4 cut(s) 49, 118, 477, 519
BlsI GCNGC 4 cut(s) 50, 119, 478, 520
Bme1390I CCNGG 2 cut(s) 260, 593
BmiI GGNNCC 3 cut(s) 550, 590, 705
BmrFI CCNGG 2 cut(s) 260, 593
BmsI GCATC 3 cut(s) 231, 359, 595
BplI GAGNNNNNCTC 2 cut(s) 548, 580
BpmI CTGGAG 1 cut(s) 235
BpuEI CTTGAG 2 cut(s) 203, 482
BsaJI CCNNGG 4 cut(s) 258, 534, 592, 627
BsaWI WCCGGW 2 cut(s) 171, 706
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 521, 598, 728
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 2 cut(s) 218, 267
BseAI TCCGGA 1 cut(s) 706
BseBI CCWGG 2 cut(s) 260, 593
BseDI CCNNGG 4 cut(s) 258, 534, 592, 627
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 4 cut(s) 259, 521, 598, 728
BseMII CTCAG 1 cut(s) 304
BseNI ACTGG 2 cut(s) 218, 267
BseRI GAGGAG 3 cut(s) 176, 179, 460
BseXI GCAGC 1 cut(s) 35
BseYI CCCAGC 2 cut(s) 199, 383
Bsh1236I CGCG 1 cut(s) 726
Bsh1285I CGRYCG 1 cut(s) 531
BshFI GGCC 2 cut(s) 120, 455
BsiEI CGRYCG 1 cut(s) 531
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 3 cut(s) 172, 522, 707
BsiWI CGTACG 1 cut(s) 415
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 4 cut(s) 259, 521, 598, 728
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 2 cut(s) 120, 455
Bsp1286I GDGCHC 3 cut(s) 171, 486, 706
Bsp13I TCCGGA 1 cut(s) 706
Bsp143I GATC 7 cut(s) 91, 96, 248, 442, 528, 633, 661
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 7 cut(s) 117, 312, 474, 477, 516, 519, 724
BspANI GGCC 2 cut(s) 120, 455
BspCNI CTCAG 1 cut(s) 303
BspEI TCCGGA 1 cut(s) 706
BspFNI CGCG 1 cut(s) 726
BspLI GGNNCC 3 cut(s) 550, 590, 705
BspPI GGATC 2 cut(s) 243, 641
BsrFI RCCGGY 1 cut(s) 521
BsrI ACTGG 2 cut(s) 218, 267
BssAI RCCGGY 1 cut(s) 521
BssECI CCNNGG 4 cut(s) 258, 534, 592, 627
BssMI GATC 7 cut(s) 91, 96, 248, 442, 528, 633, 661
BssT1I CCWWGG 1 cut(s) 627
Bst2UI CCWGG 2 cut(s) 260, 593
Bst4CI ACNGT 2 cut(s) 411, 420
BstC8I GCNNGC 3 cut(s) 457, 516, 523
BstDEI CTNAG 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 1 cut(s) 158
BstFNI CGCG 1 cut(s) 726
BstKTI GATC 7 cut(s) 94, 99, 251, 445, 531, 636, 664
BstMBI GATC 7 cut(s) 91, 96, 248, 442, 528, 633, 661
BstMCI CGRYCG 1 cut(s) 531
BstMWI GCNNNNNNNGC 2 cut(s) 272, 320
BstNI CCWGG 2 cut(s) 260, 593
BstSCI CCNGG 2 cut(s) 258, 591
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 2 cut(s) 96, 248
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 2 cut(s) 96, 248
BsuI GTATCC 1 cut(s) 666
BsuRI GGCC 2 cut(s) 120, 455
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 1 cut(s) 158
BtsI GCAGTG 2 cut(s) 318, 546
BtsIMutI CAGTG 2 cut(s) 318, 546
Cac8I GCNNGC 3 cut(s) 457, 516, 523
Cfr10I RCCGGY 1 cut(s) 521
Csp6I GTAC 3 cut(s) 306, 416, 421
CviAII CATG 2 cut(s) 272, 628
CviQI GTAC 3 cut(s) 306, 416, 421
DdeI CTNAG 1 cut(s) 290
DpnI GATC 7 cut(s) 93, 98, 250, 444, 530, 635, 663
DpnII GATC 7 cut(s) 91, 96, 248, 442, 528, 633, 661
EaeI YGGCCR 1 cut(s) 453
EciI GGCGGA 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 627
Eco24I GRGCYC 2 cut(s) 486, 706
Eco32I GATATC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 258, 591
EcoRV GATATC 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 627
EcoT38I GRGCYC 2 cut(s) 486, 706
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 2 cut(s) 275, 631
FaiI YATR 7 cut(s) 74, 80, 138, 237, 273, 629, 674
FaqI GGGAC 1 cut(s) 366
FatI CATG 2 cut(s) 271, 627
FauI CCCGC 2 cut(s) 523, 731
FbaI TGATCA 1 cut(s) 661
Fnu4HI GCNGC 4 cut(s) 49, 118, 477, 519
FokI GGATG 1 cut(s) 165
FriOI GRGCYC 2 cut(s) 486, 706
Fsp4HI GCNGC 4 cut(s) 49, 118, 477, 519
FspBI CTAG 1 cut(s) 462
GluI GCNGC 4 cut(s) 49, 118, 477, 519
GsaI CCCAGC 2 cut(s) 203, 387
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 2 cut(s) 120, 455
HapII CCGG 3 cut(s) 172, 522, 707
Hin1II CATG 2 cut(s) 275, 631
HinfI GANTC 4 cut(s) 395, 563, 611, 747
HpaII CCGG 3 cut(s) 172, 522, 707
HphI GGTGA 2 cut(s) 221, 232
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 5 cut(s) 96, 293, 568, 652, 687
Hpy188III TCNNGA 8 cut(s) 57, 125, 182, 440, 462, 615, 659, 707
Hpy8I GTNNAC 1 cut(s) 544
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 411, 420
HpyCH4V TGCA 4 cut(s) 12, 323, 426, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 320
HpyF3I CTNAG 1 cut(s) 290
Hsp92II CATG 2 cut(s) 275, 631
Kpn2I TCCGGA 1 cut(s) 706
KroI GCCGGC 1 cut(s) 521
KroNI GCCGGC 1 cut(s) 523
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 7 cut(s) 91, 96, 248, 442, 528, 633, 661
LmnI GCTCC 3 cut(s) 166, 548, 709
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 3 cut(s) 231, 359, 595
MaeI CTAG 1 cut(s) 462
MaeIII GTNAC 3 cut(s) 209, 238, 612
MalI GATC 7 cut(s) 93, 98, 250, 444, 530, 635, 663
MboI GATC 7 cut(s) 91, 96, 248, 442, 528, 633, 661
MboII GAAGA 2 cut(s) 21, 700
MflI RGATCY 2 cut(s) 96, 248
MhlI GDGCHC 3 cut(s) 171, 486, 706
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 1 cut(s) 133
MluNI TGGCCA 1 cut(s) 455
MlyI GAGTC 2 cut(s) 557, 620
MmeI TCCRAC 2 cut(s) 630, 709
MnlI CCTC 8 cut(s) 154, 157, 178, 210, 347, 478, 481, 529
Mox20I TGGCCA 1 cut(s) 455
MroI TCCGGA 1 cut(s) 706
MroNI GCCGGC 1 cut(s) 521
MroXI GAANNNNTTC 1 cut(s) 681
MscI TGGCCA 1 cut(s) 455
MseI TTAA 1 cut(s) 510
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 2 cut(s) 18, 48
MspI CCGG 3 cut(s) 172, 522, 707
MspR9I CCNGG 2 cut(s) 260, 593
MvaI CCWGG 2 cut(s) 260, 593
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 2 cut(s) 272, 320
NaeI GCCGGC 1 cut(s) 523
NcoI CCATGG 1 cut(s) 627
NdeII GATC 7 cut(s) 91, 96, 248, 442, 528, 633, 661
NgoMIV GCCGGC 1 cut(s) 521
NlaIII CATG 2 cut(s) 275, 631
NlaIV GGNNCC 3 cut(s) 550, 590, 705
NmeAIII GCCGAG 4 cut(s) 398, 505, 559, 634
NmuCI GTSAC 3 cut(s) 209, 238, 612
PdiI GCCGGC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 2 cut(s) 395, 747
Pfl23II CGTACG 1 cut(s) 415
PkrI GCNGC 4 cut(s) 50, 119, 478, 520
Ple19I CGATCG 1 cut(s) 531
PleI GAGTC 2 cut(s) 557, 619
PpsI GAGTC 2 cut(s) 557, 619
PsiI TTATAA 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 258, 591
PspFI CCCAGC 2 cut(s) 199, 383
PspGI CCWGG 2 cut(s) 258, 591
PspLI CGTACG 1 cut(s) 415
PspN4I GGNNCC 3 cut(s) 550, 590, 705
PsuI RGATCY 2 cut(s) 96, 248
PvuI CGATCG 1 cut(s) 531
PvuII CAGCTG 2 cut(s) 18, 48
RsaI GTAC 3 cut(s) 307, 417, 422
RsaNI GTAC 3 cut(s) 306, 416, 421
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 4 cut(s) 49, 118, 477, 519
Sau3AI GATC 7 cut(s) 91, 96, 248, 442, 528, 633, 661
SchI GAGTC 2 cut(s) 557, 620
ScrFI CCNGG 2 cut(s) 260, 593
SduI GDGCHC 3 cut(s) 171, 486, 706
SetI ASST 9 cut(s) 20, 50, 70, 79, 264, 339, 461, 561, 650
SfaNI GCATC 3 cut(s) 231, 359, 595
SmlI CTYRAG 2 cut(s) 182, 497
SmoI CTYRAG 2 cut(s) 182, 497
Sse9I AATT 1 cut(s) 133
SsiI CCGC 7 cut(s) 117, 312, 474, 477, 516, 519, 724
SspI AATATT 1 cut(s) 284
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 258, 591
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 2 cut(s) 411, 420
TaqI TCGA 7 cut(s) 64, 339, 351, 398, 441, 527, 636
TasI AATT 1 cut(s) 133
TauI GCSGC 3 cut(s) 120, 479, 521
TfiI GAWTC 2 cut(s) 395, 747
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 2 cut(s) 325, 546
TseFI GTSAC 3 cut(s) 209, 238, 612
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 3 cut(s) 209, 238, 612
TspDTI ATGAA 2 cut(s) 725, 730
TspGWI ACGGA 2 cut(s) 403, 561
TspRI CASTG 2 cut(s) 325, 546
XbaI TCTAGA 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.