Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004897.1

Orthogroup ID

OG0020746

Physical Location & Seq

Genomic Coordinates Forward (+)

64932 .. 67004

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004897.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgtccctggagtatatcaaaaagatcatctctgaagatgtcaacaatacctttctggcagcaggagaaaaaactattatcactacttacgatcatcctgacgtagtcaatagtgacctgttcctatctcttaccagaaaagagatagattcgacactgacatgcttacagtgggtggagcggcttgaaaccaacaaccactacaaaatgtatgttgatacagatgtcgaagacaacgcaacaactgctcgtatggcccagacagataacgactcgtttgtccttgccagctctagaccctcctccaccgccgagcccaccattgttctcaagggcttgattaagctcgccgccggctcgattgccgaggcagtgaacggagccagagaactggactccgatgacgacgaagtgcaagggaacaaggatagggttgatgccgagtcacgattggcttccatggggatcgacagggataggtcggagtatcatgatcaagccaccatagaagccattcggaagaaaaggaagtgggctccggaagtccaaaccccccgcgttggatttcatttcattggattcggggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCFC NTR2

Protein Analysis

196

Amino Acids

21.95

Weight (kDa)

4.8

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020746)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004897.1_g000010
rosa_roxburghii	Rroxscaffold_6G00412870
rosa_samantha	Rh4BG397200 Rh4CG412400 Rh6DG497800 Rh7BG118100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	181
AccII	CGCG	1 cut(s)	558
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	4 cut(s)	181, 309, 351, 556
AclWI	GGATC	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	560
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	2 cut(s)	291, 346
AluI	AGCT	2 cut(s)	291, 346
AlwI	GGATC	1 cut(s)	473
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	59
Asp700I	GAANNNNTTC	1 cut(s)	513
AspS9I	GGNCC	1 cut(s)	256
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BanII	GRGCYC	2 cut(s)	318, 538
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	8
BclI	TGATCA	1 cut(s)	493
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	3 cut(s)	60, 182, 351
BlsI	GCNGC	3 cut(s)	61, 183, 352
Bme1390I	CCNGG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	382, 537
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	314
BsaJI	CCNNGG	3 cut(s)	6, 366, 459
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	8
BseDI	CCNNGG	3 cut(s)	6, 366, 459
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	354, 539
BslI	CCNNNNNNNGG	1 cut(s)	560
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	318, 538
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	4 cut(s)	24, 91, 465, 493
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	4 cut(s)	181, 309, 351, 556
BspANI	GGCC	1 cut(s)	257
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	558
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	2 cut(s)	382, 537
BspPI	GGATC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	3 cut(s)	6, 366, 459
BssMI	GATC	4 cut(s)	24, 91, 465, 493
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	171
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	3 cut(s)	289, 348, 355
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	1 cut(s)	558
BstKTI	GATC	4 cut(s)	27, 94, 468, 496
BstMBI	GATC	4 cut(s)	24, 91, 465, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 254
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	155, 176, 378
Cac8I	GCNNGC	3 cut(s)	289, 348, 355
CciI	TCATGA	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	256
CviAII	CATG	3 cut(s)	162, 460, 491
DpnI	GATC	4 cut(s)	26, 93, 467, 495
DpnII	GATC	4 cut(s)	24, 91, 465, 493
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	2 cut(s)	318, 538
Eco57I	CTGAAG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	2 cut(s)	318, 538
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	3 cut(s)	165, 463, 494
FaiI	YATR	7 cut(s)	15, 163, 213, 254, 461, 492, 506
FatI	CATG	3 cut(s)	161, 459, 490
FauI	CCCGC	1 cut(s)	563
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	60, 182, 351
FokI	GGATG	1 cut(s)	81
FriOI	GRGCYC	2 cut(s)	318, 538
Fsp4HI	GCNGC	3 cut(s)	60, 182, 351
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	3 cut(s)	60, 182, 351
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	2 cut(s)	354, 539
Hin1II	CATG	3 cut(s)	165, 463, 494
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	5 cut(s)	149, 272, 395, 443, 579
HpaII	CCGG	2 cut(s)	354, 539
Hpy166II	GTNNAC	2 cut(s)	43, 376
Hpy188I	TCNGA	4 cut(s)	34, 400, 484, 519
Hpy188III	TCNNGA	5 cut(s)	98, 294, 447, 491, 539
Hpy8I	GTNNAC	2 cut(s)	43, 376
Hpy99I	CGWCG	1 cut(s)	410
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 254
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	165, 463, 494
Kpn2I	TCCGGA	1 cut(s)	538
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	4 cut(s)	24, 91, 465, 493
LmnI	GCTCC	3 cut(s)	178, 380, 541
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	113, 444
MalI	GATC	4 cut(s)	26, 93, 467, 495
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	4 cut(s)	24, 91, 465, 493
MboII	GAAGA	3 cut(s)	47, 242, 532
MhlI	GDGCHC	2 cut(s)	318, 538
MlyI	GAGTC	3 cut(s)	266, 389, 452
MmeI	TCCRAC	2 cut(s)	462, 541
MnlI	CCTC	3 cut(s)	310, 313, 361
MroI	TCCGGA	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	353
MroXI	GAANNNNTTC	1 cut(s)	513
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	2 cut(s)	354, 539
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	2 cut(s)	245, 254
NaeI	GCCGGC	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	4 cut(s)	24, 91, 465, 493
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	3 cut(s)	165, 463, 494
NlaIV	GGNNCC	2 cut(s)	382, 537
NmeAIII	GCCGAG	3 cut(s)	337, 391, 466
NmuCI	GTSAC	2 cut(s)	113, 444
NspI	RCATGY	1 cut(s)	165
PagI	TCATGA	1 cut(s)	490
PdiI	GCCGGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	2 cut(s)	149, 579
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	61, 183, 352
PleI	GAGTC	3 cut(s)	266, 389, 451
PpsI	GAGTC	3 cut(s)	266, 389, 451
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	382, 537
PspPI	GGNCC	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	60, 182, 351
Sau3AI	GATC	4 cut(s)	24, 91, 465, 493
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	3 cut(s)	266, 389, 452
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	2 cut(s)	318, 538
SetI	ASST	6 cut(s)	53, 105, 120, 293, 348, 482
SfaNI	GCATC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SsiI	CCGC	4 cut(s)	181, 309, 351, 556
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	1 cut(s)	171
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	152, 228, 359, 468
TauI	GCSGC	2 cut(s)	184, 353
TfiI	GAWTC	2 cut(s)	149, 579
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	3 cut(s)	162, 176, 378
TseFI	GTSAC	2 cut(s)	113, 444
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	2 cut(s)	113, 444
TspDTI	ATGAA	2 cut(s)	557, 562
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	3 cut(s)	162, 176, 378
Tth111I	GACNNNGTC	1 cut(s)	104
XbaI	TCTAGA	1 cut(s)	293
XceI	RCATGY	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	513
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.