Rh7AG281500
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015634
Physical Location & Seq
Forward (+)
29950001 .. 29951019
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG281500.1

Sequence Viewer

Length: 840 bp
ATGTACGGCGGCGGAGGAGACGAGGATGAGAGCATGGGATTAGGGACGATGAGGGTGATGGTGACTAGTCCTACAGGGCAGTGGGGCCCGGACGAGACGAGGGAGCTGATCGCGATCCGTGGGGAGTTGGAGAGGGACTCCTCTGTGGCCAAGCGCAGCAAGGCTCTATGGGAAGCAGTCAGCTCTAGGATGACGGCCAGAGGCTTCAATCGAACTTCGGAACAGTGCAAGTGCAAGTGGAAGAATCTCCTCATTCGATACAAGGGGAAGGAGACGTCTGATCCGGAGATTGGCAGGAAATGTCCATTCTTTGAGGAATTGCAGGCGGTGTTTACTGAGAGAGAAAGGAATATGCAAAGATTGCTGCTTGATTCCGAGGCGGGTACTCCCCGTTCCAAGAAGAGGGTGAAGAAAGCGAGGTCAGGCCGATCATCGGATGAGTTATCGGAAGACCCTGATGAGGATGAGGATGGTAGCAATGGAAATATTAAGAAGATGAAGGCTGAAAGAGTGGTAATGCCAAGAGCAATGAATGCTACTGCAAATTTTAGCAGTGGGAGTAGTACTGTAACGGAAATGCTCAAGGAGTTTTTAAAGCAGCAGCAGAGGATGGAGATTGAGTGGAGAGAAATGATGGAGAGGCGGGCACAGGAACGGCAGTTATTTGAGCAGGAATGGCGTCAGAGAATGGTAAAGGTGGAGAGGGAGCGGTTAATGGTTGAGAAAGCTTGGAGGGAGAGGGAAGAACAAAGGAGGATGAGAGATGAGAGCAGAGCTGAGAGGAGGGATGCCCTCATAAACAGTATCTTGAATAAACTTATCGATCAAACTAACTTCTGA

Protein Analysis

279

Amino Acids

32.69

Weight (kDa)

9.08

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 27 - 109 2.3e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24280 FvH4_5g24280 FvH4_5g24280
malus_domestica MD06G1021000.v1.1
prunus_persica Prupe.5G017700_v2.0.a1
pyrus_communis pycom06g01530
rosa_chinensis RchiOBHm_Chr7g0214511
rosa_laevigata RLG00000002743
rosa_multiflora Rmu_sc0004199.1_g000042
rosa_roxburghii Rroxscaffold_3G00245280
rosa_rugosa Rorug07G0145800
rosa_samantha Rh7AG281500 Rh7BG273100 Rh7CG300800 Rh7DG285600
rosa_wichuraiana Rw7G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 709
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 6 cut(s) 9, 12, 326, 380, 643, 709
AclWI GGATC 2 cut(s) 109, 275
AcoI YGGCCR 2 cut(s) 147, 195
AcsI RAATTY 1 cut(s) 544
AcyI GRCGYC 2 cut(s) 275, 679
AfaI GTAC 3 cut(s) 5, 385, 565
AfiI CCNNNNNNNGG 4 cut(s) 290, 402, 433, 460
AgsI TTSAA 2 cut(s) 208, 811
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 4 cut(s) 106, 183, 728, 776
AluI AGCT 4 cut(s) 106, 183, 728, 776
Alw26I GTCTC 3 cut(s) 12, 89, 266
AlwI GGATC 2 cut(s) 109, 275
Aor13HI TCCGGA 1 cut(s) 283
AoxI GGCC 4 cut(s) 85, 147, 195, 424
ApaI GGGCCC 1 cut(s) 89
ApeKI GCWGC 4 cut(s) 156, 364, 598, 601
ApoI RAATTY 1 cut(s) 544
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 85, 86
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 3 cut(s) 67, 73, 418
BaeGI GKGCMC 2 cut(s) 89, 649
BalI TGGCCA 1 cut(s) 149
BanII GRGCYC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 456
BbvI GCAGC 4 cut(s) 168, 351, 610, 613
BccI CCATC 4 cut(s) 52, 464, 604, 628
BceAI ACGGC 3 cut(s) 22, 210, 671
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 3 cut(s) 12, 89, 266
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 186
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 5 cut(s) 10, 157, 365, 599, 602
BlsI GCNGC 5 cut(s) 11, 158, 366, 600, 603
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 85, 86
BmiI GGNNCC 2 cut(s) 86, 87
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 778
BpiI GAAGAC 1 cut(s) 456
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 822
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 2 cut(s) 275, 679
BsaJI CCNNGG 2 cut(s) 118, 375
BsaWI WCCGGW 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 402, 433, 460
Bse3DI GCAATG 2 cut(s) 484, 534
Bse8I GATNNNNATC 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 283
BseCI ATCGAT 1 cut(s) 822
BseDI CCNNGG 2 cut(s) 118, 375
BseGI GGATG 8 cut(s) 31, 195, 442, 469, 475, 615, 762, 793
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 4 cut(s) 290, 402, 433, 460
BseMI GCAATG 2 cut(s) 484, 534
BseMII CTCAG 2 cut(s) 327, 768
BseRI GAGGAG 4 cut(s) 30, 130, 239, 796
BseSI GKGCMC 2 cut(s) 89, 649
BseXI GCAGC 4 cut(s) 168, 351, 610, 613
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 4 cut(s) 87, 149, 197, 426
BshVI ATCGAT 1 cut(s) 822
BsiSI CCGG 2 cut(s) 89, 284
BslFI GGGAC 2 cut(s) 58, 149
BslI CCNNNNNNNGG 4 cut(s) 290, 402, 433, 460
BsmAI GTCTC 3 cut(s) 12, 89, 266
BsmBI CGTCTC 3 cut(s) 12, 89, 266
BsmFI GGGAC 2 cut(s) 58, 149
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 4 cut(s) 87, 149, 197, 426
Bsp120I GGGCCC 1 cut(s) 85
Bsp1286I GDGCHC 2 cut(s) 89, 649
Bsp13I TCCGGA 1 cut(s) 283
Bsp143I GATC 5 cut(s) 108, 114, 280, 428, 823
Bsp68I TCGCGA 1 cut(s) 113
BspACI CCGC 6 cut(s) 9, 12, 326, 380, 643, 709
BspANI GGCC 4 cut(s) 87, 149, 197, 426
BspCNI CTCAG 2 cut(s) 328, 769
BspDI ATCGAT 1 cut(s) 822
BspEI TCCGGA 1 cut(s) 283
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 86, 87
BspPI GGATC 2 cut(s) 109, 275
BsrBI CCGCTC 1 cut(s) 709
BsrDI GCAATG 2 cut(s) 484, 534
BssECI CCNNGG 2 cut(s) 118, 375
BssMI GATC 5 cut(s) 108, 114, 280, 428, 823
BssNI GRCGYC 2 cut(s) 275, 679
Bst4CI ACNGT 3 cut(s) 225, 568, 803
Bst6I CTCTTC 1 cut(s) 395
BstACI GRCGYC 2 cut(s) 275, 679
BstAPI GCANNNNNTGC 2 cut(s) 361, 533
BstC8I GCNNGC 2 cut(s) 324, 645
BstDEI CTNAG 2 cut(s) 336, 777
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 8 cut(s) 31, 195, 442, 469, 475, 615, 762, 793
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 5 cut(s) 111, 117, 283, 431, 826
BstMAI GTCTC 3 cut(s) 12, 89, 266
BstMBI GATC 5 cut(s) 108, 114, 280, 428, 823
BstMWI GCNNNNNNNGC 3 cut(s) 361, 533, 676
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 2 cut(s) 89, 649
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 4 cut(s) 168, 351, 610, 613
BstV2I GAAGAC 1 cut(s) 456
Bsu15I ATCGAT 1 cut(s) 822
BsuRI GGCC 4 cut(s) 87, 149, 197, 426
BsuTUI ATCGAT 1 cut(s) 822
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 8 cut(s) 31, 195, 442, 469, 475, 615, 762, 793
BtsI GCAGTG 2 cut(s) 86, 559
BtsIMutI CAGTG 3 cut(s) 86, 230, 559
BtuMI TCGCGA 1 cut(s) 113
Cac8I GCNNGC 2 cut(s) 324, 645
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 85, 86
ClaI ATCGAT 1 cut(s) 822
CseI GACGC 1 cut(s) 668
Csp6I GTAC 3 cut(s) 4, 384, 564
CviAII CATG 1 cut(s) 34
CviQI GTAC 3 cut(s) 4, 384, 564
DdeI CTNAG 2 cut(s) 336, 777
DpnI GATC 5 cut(s) 110, 116, 282, 430, 825
DpnII GATC 5 cut(s) 108, 114, 280, 428, 823
DraI TTTAAA 1 cut(s) 594
EaeI YGGCCR 2 cut(s) 147, 195
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
EciI GGCGGA 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 89
Esp3I CGTCTC 3 cut(s) 12, 89, 266
FaeI CATG 1 cut(s) 37
FaiI YATR 4 cut(s) 35, 169, 353, 797
FaqI GGGAC 2 cut(s) 58, 149
FatI CATG 1 cut(s) 33
FauI CCCGC 2 cut(s) 373, 636
Fnu4HI GCNGC 5 cut(s) 10, 157, 365, 599, 602
FokI GGATG 8 cut(s) 38, 202, 449, 476, 482, 622, 769, 800
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 5 cut(s) 10, 157, 365, 599, 602
FspBI CTAG 2 cut(s) 66, 186
GlaI GCGC 1 cut(s) 155
GluI GCNGC 5 cut(s) 10, 157, 365, 599, 602
HaeIII GGCC 4 cut(s) 87, 149, 197, 426
HapII CCGG 2 cut(s) 89, 284
HgaI GACGC 1 cut(s) 668
HhaI GCGC 1 cut(s) 156
Hin1I GRCGYC 2 cut(s) 275, 679
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 3 cut(s) 137, 244, 371
HpaII CCGG 2 cut(s) 89, 284
HphI GGTGA 3 cut(s) 67, 73, 418
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 7 cut(s) 220, 280, 376, 436, 448, 684, 839
Hpy188III TCNNGA 3 cut(s) 112, 284, 808
Hpy8I GTNNAC 1 cut(s) 333
HpyAV CCTTC 2 cut(s) 262, 493
HpyCH4III ACNGT 3 cut(s) 225, 568, 803
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 5 cut(s) 228, 234, 322, 355, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 361, 533, 676
HpyF3I CTNAG 2 cut(s) 336, 777
HpySE526I ACGT 1 cut(s) 275
Hsp92I GRCGYC 2 cut(s) 275, 679
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 154
Kpn2I TCCGGA 1 cut(s) 283
Kzo9I GATC 5 cut(s) 108, 114, 280, 428, 823
LmnI GCTCC 2 cut(s) 103, 706
Lsp1109I GCAGC 4 cut(s) 168, 351, 610, 613
LweI GCATC 1 cut(s) 778
MaeI CTAG 2 cut(s) 66, 186
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 61, 568
MalI GATC 5 cut(s) 110, 116, 282, 430, 825
MbiI CCGCTC 1 cut(s) 709
MboI GATC 5 cut(s) 108, 114, 280, 428, 823
MboII GAAGA 6 cut(s) 253, 412, 421, 461, 505, 755
MhlI GDGCHC 2 cut(s) 89, 649
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 2 cut(s) 317, 544
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 108
Mox20I TGGCCA 1 cut(s) 149
MroI TCCGGA 1 cut(s) 283
MscI TGGCCA 1 cut(s) 149
MseI TTAA 3 cut(s) 489, 593, 713
Msp20I TGGCCA 1 cut(s) 149
MspI CCGG 2 cut(s) 89, 284
MspR9I CCNGG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 538
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 361, 533, 676
NciI CCSGG 1 cut(s) 89
NdeII GATC 5 cut(s) 108, 114, 280, 428, 823
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 2 cut(s) 86, 87
NmuCI GTSAC 1 cut(s) 61
NruI TCGCGA 1 cut(s) 113
PctI GAATGC 1 cut(s) 538
PfeI GAWTC 2 cut(s) 244, 371
PkrI GCNGC 5 cut(s) 11, 158, 366, 600, 603
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 86, 87
PspOMI GGGCCC 1 cut(s) 85
PspPI GGNCC 2 cut(s) 85, 86
PsrI GAACNNNNNNTAC 2 cut(s) 376, 408
RruI TCGCGA 1 cut(s) 113
RsaI GTAC 3 cut(s) 5, 385, 565
RsaNI GTAC 3 cut(s) 4, 384, 564
SaqAI TTAA 3 cut(s) 489, 593, 713
SatI GCNGC 5 cut(s) 10, 157, 365, 599, 602
Sau3AI GATC 5 cut(s) 108, 114, 280, 428, 823
Sau96I GGNCC 2 cut(s) 85, 86
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 2 cut(s) 89, 649
SetI ASST 7 cut(s) 108, 185, 278, 422, 699, 730, 778
SfaNI GCATC 1 cut(s) 778
SfcI CTRYAG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 2 cut(s) 317, 544
SsiI CCGC 6 cut(s) 9, 12, 326, 380, 643, 709
SspI AATATT 1 cut(s) 487
SspMI CTAG 2 cut(s) 66, 186
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 3 cut(s) 225, 568, 803
TaiI ACGT 1 cut(s) 278
TaqI TCGA 3 cut(s) 211, 256, 822
TasI AATT 2 cut(s) 317, 544
TatI WGTACW 1 cut(s) 563
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 2 cut(s) 244, 371
Tru1I TTAA 3 cut(s) 489, 593, 713
Tru9I TTAA 3 cut(s) 489, 593, 713
TscAI CASTG 3 cut(s) 86, 230, 559
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 4 cut(s) 156, 364, 598, 601
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 512, 545
TspGWI ACGGA 2 cut(s) 107, 587
TspRI CASTG 3 cut(s) 86, 230, 559
XapI RAATTY 1 cut(s) 544
XspI CTAG 2 cut(s) 66, 186
ZraI GACGTC 1 cut(s) 276
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.