MD06G1021000.v1.1
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015634
Physical Location & Seq
Forward (+)
2640615 .. 2642534
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1021000.v1.1.491

Sequence Viewer

Length: 867 bp
ATGTATGGTGGAGGCGGAGATGAGGAAGCGAGCGTGGGGCTGAGAGGCGGCGGAGGAGGAGGAGGAGGGGGAATGATGAAGATGATGATTAGCAGTCCGACCGGGGCAGGGCAGTGGGCCTCGGAGGAGACAAGGGAGCTGATCGCGATCCGTGGGGAGCTGGAGATTAGGGACTCCGTTGTATCGAAGCGCAGCAAGCCGCAGTGGGAGGCAGTGAGCTCTAAGATGACTGAGAGAGGCTTCAATCGAACCCCCGAGCAGTGCAAGTGCAAGTGGAAGAACCTCCTCATTCGCTACAAGGGGAAGGAGACGTCTGATCCAGAGAGTGGGCGGGAATGTCCATTCTTTGAAGAGTTGCACGCAGTGTTTACTGAAAGAGCCAAGAATATGCAGAGATTGCTTCTTGAATCCGAGGCGGGTTCTGCCCGACCAAAGAAACTTGTTAAGAGGAAATCGAGGTCAGGGCAGTGGTCGGATGAGTTGTCAGAAGACGCGGAGGAGGAGGATAGCCATGGGAAAGGTAAGAAAAGGAAGGGGGAAGGAGTAGTATTGGCAAGAGCAACCAATCCTGCAAGTGGAAGTAGTACTAGCAGTGTGCAGGAATTACTTAAGGAGTTTTTTCAGCATCAGCAGAGGATGGAGATGGAGTGGAGGCAAATGATGGAGAAGCGGGCACTGGAGCGGCGGCTGTTTGAGGAGGAATGGAGGCAAAAGATGGAGAAAACGGAGAGGGAGAGGTTAATGGTTGAGCAGGCTTGGAGAGAGAGGGAAGAAGAGAGAAGGATTAGGGAAGAGAGCAGAGCTGAGAGGAGGGATGCCCTGTTAACCACTCTCTTGAACAGGCTGATCAATCAAACTAACTTCTGA

Protein Analysis

289

Amino Acids

33.18

Weight (kDa)

8.88

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 38 - 121 5e-23 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24280 FvH4_5g24280 FvH4_5g24280
malus_domestica MD06G1021000.v1.1
prunus_persica Prupe.5G017700_v2.0.a1
pyrus_communis pycom06g01530
rosa_chinensis RchiOBHm_Chr7g0214511
rosa_laevigata RLG00000002743
rosa_multiflora Rmu_sc0004199.1_g000042
rosa_roxburghii Rroxscaffold_3G00245280
rosa_rugosa Rorug07G0145800
rosa_samantha Rh7AG281500 Rh7BG273100 Rh7CG300800 Rh7DG285600
rosa_wichuraiana Rw7G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 314
AccB7I CCANNNNNTGG 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 682
AccII CGCG 2 cut(s) 146, 494
AclWI GGATC 2 cut(s) 142, 311
AcyI GRCGYC 1 cut(s) 311
AdeI CACNNNGTG 1 cut(s) 364
AfaI GTAC 1 cut(s) 586
AfiI CCNNNNNNNGG 3 cut(s) 108, 326, 575
AflII CTTAAG 1 cut(s) 608
AgsI TTSAA 4 cut(s) 244, 350, 407, 838
AluBI AGCT 4 cut(s) 139, 160, 219, 803
AluI AGCT 4 cut(s) 139, 160, 219, 803
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 122, 302
AlwI GGATC 2 cut(s) 142, 311
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 204
BccI CCATC 4 cut(s) 631, 637, 655, 709
BclI TGATCA 1 cut(s) 846
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 122, 302
BfaI CTAG 1 cut(s) 588
BfrI CTTAAG 1 cut(s) 608
BisI GCNGC 5 cut(s) 49, 193, 200, 683, 686
BlsI GCNGC 5 cut(s) 50, 194, 201, 684, 687
BmcAI AGTACT 1 cut(s) 586
Bme1390I CCNGG 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 2 cut(s) 634, 805
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 2 cut(s) 182, 698
BpuMI CCSGG 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 311
BsaJI CCNNGG 5 cut(s) 102, 120, 151, 411, 511
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 326, 575
Bse1I ACTGG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 146
BseDI CCNNGG 5 cut(s) 102, 120, 151, 411, 511
BseGI GGATG 3 cut(s) 481, 642, 820
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 3 cut(s) 108, 326, 575
BseMII CTCAG 3 cut(s) 32, 222, 795
BseNI ACTGG 1 cut(s) 681
BseSI GKGCMC 1 cut(s) 676
BseXI GCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 617
Bsh1236I CGCG 2 cut(s) 146, 494
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 3 cut(s) 108, 326, 575
BsmAI GTCTC 2 cut(s) 122, 302
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 221, 676
Bsp143I GATC 4 cut(s) 141, 147, 316, 846
Bsp19I CCATGG 1 cut(s) 511
Bsp68I TCGCGA 1 cut(s) 146
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 3 cut(s) 33, 223, 796
BspFNI CGCG 2 cut(s) 146, 494
BspPI GGATC 2 cut(s) 142, 311
BspTI CTTAAG 1 cut(s) 608
BsrBI CCGCTC 1 cut(s) 682
BsrI ACTGG 1 cut(s) 681
BssECI CCNNGG 5 cut(s) 102, 120, 151, 411, 511
BssMI GATC 4 cut(s) 141, 147, 316, 846
BssNI GRCGYC 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 511
Bst6I CTCTTC 3 cut(s) 345, 768, 786
BstACI GRCGYC 1 cut(s) 311
BstAFI CTTAAG 1 cut(s) 608
BstAPI GCANNNNNTGC 1 cut(s) 397
BstC8I GCNNGC 5 cut(s) 31, 197, 360, 672, 753
BstDEI CTNAG 4 cut(s) 41, 222, 231, 804
BstDSI CCRYGG 2 cut(s) 151, 511
BstF5I GGATG 3 cut(s) 481, 642, 820
BstFNI CGCG 2 cut(s) 146, 494
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 4 cut(s) 144, 150, 319, 849
BstMAI GTCTC 2 cut(s) 122, 302
BstMBI GATC 4 cut(s) 141, 147, 316, 846
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 3 cut(s) 196, 397, 422
BstSCI CCNGG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 676
BstUI CGCG 2 cut(s) 146, 494
BstV1I GCAGC 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 495
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 2 cut(s) 151, 511
BtsCI GGATG 3 cut(s) 481, 642, 820
BtsI GCAGTG 7 cut(s) 119, 209, 219, 266, 369, 473, 598
BtsIMutI CAGTG 8 cut(s) 119, 209, 219, 266, 369, 473, 598, 674
BtuMI TCGCGA 1 cut(s) 146
Cac8I GCNNGC 5 cut(s) 31, 197, 360, 672, 753
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 500
Csp6I GTAC 1 cut(s) 585
CviAII CATG 1 cut(s) 512
CviQI GTAC 1 cut(s) 585
DdeI CTNAG 4 cut(s) 41, 222, 231, 804
DpnI GATC 4 cut(s) 143, 149, 318, 848
DpnII GATC 4 cut(s) 141, 147, 316, 846
DraIII CACNNNGTG 1 cut(s) 364
Eam1104I CTCTTC 3 cut(s) 345, 768, 786
EarI CTCTTC 3 cut(s) 345, 768, 786
EciI GGCGGA 2 cut(s) 30, 66
Ecl136II GAGCTC 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 511
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 1 cut(s) 515
FaiI YATR 3 cut(s) 6, 389, 513
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 511
FauI CCCGC 3 cut(s) 324, 409, 663
FbaI TGATCA 1 cut(s) 846
Fnu4HI GCNGC 5 cut(s) 49, 193, 200, 683, 686
FokI GGATG 3 cut(s) 488, 649, 827
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 5 cut(s) 49, 193, 200, 683, 686
FspBI CTAG 1 cut(s) 588
GlaI GCGC 1 cut(s) 191
GluI GCNGC 5 cut(s) 49, 193, 200, 683, 686
GsuI CTGGAG 2 cut(s) 182, 698
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 500
HhaI GCGC 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 311
Hin1II CATG 1 cut(s) 515
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 825
HindII GTYRAC 1 cut(s) 825
HinfI GANTC 2 cut(s) 173, 407
HpaI GTTAAC 1 cut(s) 825
HpaII CCGG 1 cut(s) 102
Hpy166II GTNNAC 2 cut(s) 369, 825
Hpy188I TCNGA 7 cut(s) 99, 124, 316, 412, 475, 487, 866
Hpy188III TCNNGA 4 cut(s) 145, 320, 404, 835
Hpy8I GTNNAC 2 cut(s) 369, 825
HpyAV CCTTC 4 cut(s) 298, 526, 533, 774
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 6 cut(s) 264, 270, 358, 391, 572, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 397, 422
HpyF3I CTNAG 4 cut(s) 41, 222, 231, 804
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 311
Hsp92II CATG 1 cut(s) 515
HspAI GCGC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 846
KspAI GTTAAC 1 cut(s) 825
Kzo9I GATC 4 cut(s) 141, 147, 316, 846
LmnI GCTCC 3 cut(s) 136, 157, 679
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 2 cut(s) 634, 805
MaeI CTAG 1 cut(s) 588
MaeII ACGT 1 cut(s) 311
MalI GATC 4 cut(s) 143, 149, 318, 848
MbiI CCGCTC 1 cut(s) 682
MboI GATC 4 cut(s) 141, 147, 316, 846
MboII GAAGA 7 cut(s) 91, 289, 362, 500, 782, 785, 803
MhlI GDGCHC 2 cut(s) 221, 676
MluCI AATT 1 cut(s) 602
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 2 cut(s) 122, 453
MseI TTAA 4 cut(s) 444, 609, 740, 824
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 103
MvnI CGCG 2 cut(s) 146, 494
MwoI GCNNNNNNNGC 3 cut(s) 196, 397, 422
NciI CCSGG 1 cut(s) 103
NcoI CCATGG 1 cut(s) 511
NdeII GATC 4 cut(s) 141, 147, 316, 846
NlaIII CATG 1 cut(s) 515
NruI TCGCGA 1 cut(s) 146
PfeI GAWTC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 5 cut(s) 50, 194, 201, 684, 687
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Psp124BI GAGCTC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 117
RruI TCGCGA 1 cut(s) 146
RsaI GTAC 1 cut(s) 586
RsaNI GTAC 1 cut(s) 585
SacI GAGCTC 1 cut(s) 221
SaqAI TTAA 4 cut(s) 444, 609, 740, 824
SatI GCNGC 5 cut(s) 49, 193, 200, 683, 686
Sau3AI GATC 4 cut(s) 141, 147, 316, 846
Sau96I GGNCC 1 cut(s) 117
ScaI AGTACT 1 cut(s) 586
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 221, 676
SetI ASST 9 cut(s) 141, 162, 221, 285, 314, 461, 523, 740, 805
SfaNI GCATC 2 cut(s) 634, 805
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 1 cut(s) 602
SspMI CTAG 1 cut(s) 588
SstI GAGCTC 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 511
TaiI ACGT 1 cut(s) 314
TaqI TCGA 3 cut(s) 185, 247, 455
TasI AATT 1 cut(s) 602
TatI WGTACW 1 cut(s) 584
TauI GCSGC 4 cut(s) 51, 202, 685, 688
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 4 cut(s) 444, 609, 740, 824
Tru9I TTAA 4 cut(s) 444, 609, 740, 824
TscAI CASTG 8 cut(s) 119, 209, 219, 266, 369, 473, 598, 681
TseI GCWGC 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 92
TspGWI ACGGA 3 cut(s) 140, 166, 740
TspRI CASTG 8 cut(s) 119, 209, 219, 266, 369, 473, 598, 681
Van91I CCANNNNNTGG 1 cut(s) 326
Vha464I CTTAAG 1 cut(s) 608
XspI CTAG 1 cut(s) 588
ZraI GACGTC 1 cut(s) 312
ZrmI AGTACT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.