Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0015634

Physical Location & Seq

Genomic Coordinates Reverse (-)

38172855 .. 38173874

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTTCGGCGGCGGAGGAGACGAGGATGAGAGCATGGGATTAGGGACGATGAGGATGATGGTGACTAGTCCTACAGGGCAGTGGGGCCCGGACGAGACGAGGGAGCTGATCGCGATCCGTGGGGAGCTGGAGAGGGACTCCTCTGTGGCCAAGCGCAGCAAGGCTCTGTGGGAAGCAGTCAGCTCTCGGATGACGGCCAGAGGCTTCAATCGAACTTCGGAACAGTGCAAGTGCAAGTGGAAGAATCTCCTCATTCGATACAAGGGGAAGGAGACGTCTGATCCGGAGATTGGCAGGAAGTGTCCGTTCTTTGAGGAATTGCAGGCGGTGTTTACTGAGAGAGAAAGGAATATGCAGAGATTGTTGCTTGATTCCGAGGATGAGGATGGTAGCAATGGAAATATTAAGAAGATGAAGGCTGAAAGAGTGGTTATGCCAAGAGTAATGAATGCTGCTGCAAATTTTAGCAGTGGCAGTAGTAGTGTAACGGAAATGCTCAAGGAGTTTTTAAAGCAGCAGCAGAGGATGGAGATTGAGTGGAGAGAAATGATGGAGAGGCGGGCACAGGAACGGCAGTTGTTTGAGCAGGAATGGCGTCAGAGAATGGTAAAGGTGGAGAGGGAGCGGTTAATGGTTGAGAAAGCTTGGAGGGAGAGGGAAGAACAAAGGAGGATGAGCGAAGAGAGCAGAGCTCAGAGGAGGGATGCCCTCATAAACAGTATCTTGAATAAACTTATCGATCAAACTAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

251

Amino Acids

29.57

Weight (kDa)

8.75

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	27 - 109	1.8e-21	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g24280 FvH4_5g24280 FvH4_5g24280
malus_domestica	MD06G1021000.v1.1
prunus_persica	Prupe.5G017700_v2.0.a1
pyrus_communis	pycom06g01530
rosa_chinensis	RchiOBHm_Chr7g0214511
rosa_laevigata	RLG00000002743
rosa_multiflora	Rmu_sc0004199.1_g000042
rosa_roxburghii	Rroxscaffold_3G00245280
rosa_rugosa	Rorug07G0145800
rosa_samantha	Rh7AG281500 Rh7BG273100 Rh7CG300800 Rh7DG285600
rosa_wichuraiana	Rw7G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	625
AccII	CGCG	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	5 cut(s)	9, 12, 326, 559, 625
AclWI	GGATC	2 cut(s)	109, 275
AcoI	YGGCCR	2 cut(s)	147, 195
AcsI	RAATTY	1 cut(s)	460
AcyI	GRCGYC	2 cut(s)	275, 595
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	208, 727
AhlI	ACTAGT	1 cut(s)	65
AluBI	AGCT	5 cut(s)	106, 127, 183, 644, 692
AluI	AGCT	5 cut(s)	106, 127, 183, 644, 692
Alw21I	GWGCWC	1 cut(s)	694
Alw26I	GTCTC	3 cut(s)	12, 89, 266
AlwI	GGATC	2 cut(s)	109, 275
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	3 cut(s)	85, 147, 195
ApaI	GGGCCC	1 cut(s)	89
ApeKI	GCWGC	5 cut(s)	156, 452, 455, 514, 517
ApoI	RAATTY	1 cut(s)	460
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	85, 86
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	73
BaeGI	GKGCMC	2 cut(s)	89, 565
BalI	TGGCCA	1 cut(s)	149
BanII	GRGCYC	2 cut(s)	89, 694
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	5 cut(s)	168, 439, 442, 526, 529
BccI	CCATC	4 cut(s)	52, 380, 520, 544
BceAI	ACGGC	2 cut(s)	210, 587
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	3 cut(s)	12, 89, 266
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	6 cut(s)	10, 157, 453, 456, 515, 518
BlsI	GCNGC	6 cut(s)	11, 158, 454, 457, 516, 519
Bme1390I	CCNGG	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	85, 86
BmiI	GGNNCC	2 cut(s)	86, 87
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	694
BplI	GAGNNNNNCTC	4 cut(s)	122, 154, 676, 708
BpmI	CTGGAG	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	738
BsaBI	GATNNNNATC	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	275, 595
BsaJI	CCNNGG	2 cut(s)	118, 375
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	113
BseAI	TCCGGA	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	738
BseDI	CCNNGG	2 cut(s)	118, 375
BseGI	GGATG	8 cut(s)	31, 60, 195, 385, 391, 531, 678, 709
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	327, 707
BseRI	GAGGAG	4 cut(s)	30, 130, 239, 712
BseSI	GKGCMC	2 cut(s)	89, 565
BseXI	GCAGC	5 cut(s)	168, 439, 442, 526, 529
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	87, 149, 197
BshVI	ATCGAT	1 cut(s)	738
BsiHKAI	GWGCWC	1 cut(s)	694
BsiSI	CCGG	2 cut(s)	89, 284
BslFI	GGGAC	2 cut(s)	58, 149
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	3 cut(s)	12, 89, 266
BsmBI	CGTCTC	3 cut(s)	12, 89, 266
BsmFI	GGGAC	2 cut(s)	58, 149
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	87, 149, 197
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	89, 565, 694
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	108, 114, 280, 739
Bsp68I	TCGCGA	1 cut(s)	113
BspACI	CCGC	5 cut(s)	9, 12, 326, 559, 625
BspANI	GGCC	3 cut(s)	87, 149, 197
BspCNI	CTCAG	2 cut(s)	328, 706
BspDI	ATCGAT	1 cut(s)	738
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	86, 87
BspPI	GGATC	2 cut(s)	109, 275
BsrBI	CCGCTC	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	118, 375
BssMI	GATC	4 cut(s)	108, 114, 280, 739
BssNI	GRCGYC	2 cut(s)	275, 595
Bst4CI	ACNGT	2 cut(s)	225, 719
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	2 cut(s)	275, 595
BstC8I	GCNNGC	2 cut(s)	324, 561
BstDEI	CTNAG	2 cut(s)	336, 693
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	8 cut(s)	31, 60, 195, 385, 391, 531, 678, 709
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	111, 117, 283, 742
BstMAI	GTCTC	3 cut(s)	12, 89, 266
BstMBI	GATC	4 cut(s)	108, 114, 280, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	592, 684
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	72
BstSLI	GKGCMC	2 cut(s)	89, 565
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	5 cut(s)	168, 439, 442, 526, 529
Bsu15I	ATCGAT	1 cut(s)	738
BsuRI	GGCC	3 cut(s)	87, 149, 197
BsuTUI	ATCGAT	1 cut(s)	738
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	8 cut(s)	31, 60, 195, 385, 391, 531, 678, 709
BtsI	GCAGTG	2 cut(s)	86, 475
BtsIMutI	CAGTG	3 cut(s)	86, 230, 475
BtuMI	TCGCGA	1 cut(s)	113
Cac8I	GCNNGC	2 cut(s)	324, 561
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	85, 86
ClaI	ATCGAT	1 cut(s)	738
CseI	GACGC	1 cut(s)	584
CviAII	CATG	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	336, 693
DpnI	GATC	4 cut(s)	110, 116, 282, 741
DpnII	GATC	4 cut(s)	108, 114, 280, 739
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	2 cut(s)	147, 195
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
EciI	GGCGGA	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	692
Eco24I	GRGCYC	2 cut(s)	89, 694
Eco53kI	GAGCTC	1 cut(s)	692
EcoICRI	GAGCTC	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	89, 694
Esp3I	CGTCTC	3 cut(s)	12, 89, 266
FaeI	CATG	1 cut(s)	37
FaiI	YATR	4 cut(s)	35, 353, 434, 713
FaqI	GGGAC	2 cut(s)	58, 149
FatI	CATG	1 cut(s)	33
FauI	CCCGC	1 cut(s)	552
Fnu4HI	GCNGC	6 cut(s)	10, 157, 453, 456, 515, 518
FokI	GGATG	8 cut(s)	38, 67, 202, 392, 398, 538, 685, 716
FriOI	GRGCYC	2 cut(s)	89, 694
Fsp4HI	GCNGC	6 cut(s)	10, 157, 453, 456, 515, 518
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	6 cut(s)	10, 157, 453, 456, 515, 518
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	87, 149, 197
HapII	CCGG	2 cut(s)	89, 284
HgaI	GACGC	1 cut(s)	584
HhaI	GCGC	1 cut(s)	156
Hin1I	GRCGYC	2 cut(s)	275, 595
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	642
HinfI	GANTC	3 cut(s)	137, 244, 371
HpaII	CCGG	2 cut(s)	89, 284
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	7 cut(s)	189, 220, 280, 376, 600, 696, 755
Hpy188III	TCNNGA	3 cut(s)	112, 284, 724
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	2 cut(s)	262, 409
HpyCH4III	ACNGT	2 cut(s)	225, 719
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	5 cut(s)	228, 234, 322, 355, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	592, 684
HpyF3I	CTNAG	2 cut(s)	336, 693
HpySE526I	ACGT	1 cut(s)	275
Hsp92I	GRCGYC	2 cut(s)	275, 595
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	1 cut(s)	154
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	108, 114, 280, 739
LmnI	GCTCC	3 cut(s)	103, 124, 622
LpnPI	CCDG	9 cut(s)	60, 102, 113, 211, 280, 297, 308, 551, 572
Lsp1109I	GCAGC	5 cut(s)	168, 439, 442, 526, 529
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	61, 484
MalI	GATC	4 cut(s)	110, 116, 282, 741
MbiI	CCGCTC	1 cut(s)	625
MboI	GATC	4 cut(s)	108, 114, 280, 739
MboII	GAAGA	4 cut(s)	253, 421, 671, 692
MhlI	GDGCHC	3 cut(s)	89, 565, 694
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	2 cut(s)	317, 460
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	131
Mox20I	TGGCCA	1 cut(s)	149
MroI	TCCGGA	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	3 cut(s)	405, 509, 629
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	2 cut(s)	89, 284
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	454
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	592, 684
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	4 cut(s)	108, 114, 280, 739
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	2 cut(s)	86, 87
NmuCI	GTSAC	1 cut(s)	61
NruI	TCGCGA	1 cut(s)	113
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	244, 371
PkrI	GCNGC	6 cut(s)	11, 158, 454, 457, 516, 519
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	694
PspN4I	GGNNCC	2 cut(s)	86, 87
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	2 cut(s)	85, 86
RruI	TCGCGA	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	694
SaqAI	TTAA	3 cut(s)	405, 509, 629
SatI	GCNGC	6 cut(s)	10, 157, 453, 456, 515, 518
Sau3AI	GATC	4 cut(s)	108, 114, 280, 739
Sau96I	GGNCC	2 cut(s)	85, 86
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	3 cut(s)	89, 565, 694
SetI	ASST	7 cut(s)	108, 129, 185, 278, 615, 646, 694
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	2 cut(s)	317, 460
SsiI	CCGC	5 cut(s)	9, 12, 326, 559, 625
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	694
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	225, 719
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	3 cut(s)	211, 256, 738
TasI	AATT	2 cut(s)	317, 460
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	244, 371
Tru1I	TTAA	3 cut(s)	405, 509, 629
Tru9I	TTAA	3 cut(s)	405, 509, 629
TscAI	CASTG	3 cut(s)	86, 230, 475
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	5 cut(s)	156, 452, 455, 514, 517
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	428, 461
TspGWI	ACGGA	3 cut(s)	107, 294, 503
TspRI	CASTG	3 cut(s)	86, 230, 475
XapI	RAATTY	1 cut(s)	460
XspI	CTAG	1 cut(s)	66
ZraI	GACGTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.