FvH4_5g24280
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015634
Physical Location & Seq
Forward (+)
15612616 .. 15620158
7543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24280.t1

Sequence Viewer

Length: 840 bp
ATGTACGGCGGCGGAGGAGACGAGGATGAGAGCATGGGGTTCGGGACGATGAGGATGATGGTGACAAGTCCTACAGGGCAGTGGGGCCCGGAGGAGACGAGGGAGCTGATCGCGATCCGTGGGGAGCTGGAGAGGGACTCCTCTGTGGCCAAGCGCAGCAAGGCTCTGTGGGAAGCCGTCAGCTCTAGGATGTCGGCCAGGGGCTTCAACCGAACTTCGGAACAGTGCAAATGCAAGTGGAAGAACCTCCTCATTCGATACAAGGGGAAGGAGACGTCTGATCCGGAGACGGGCAGGAAGTGTCCGTTCTTTGAAGAATTGCAGGAGGTGTTTACTGAGAGAGAAAGGAATATGCAGAGACTGCTGCTTGAATCCGAGGCGGGTGTTTCCCGGGCCAAGAAGAGGGTTAAGAAAGGGAGGTCAGGCAGATCGTCGGACGAGTTATCAGAAGACCCTGATGAGGATGAGGATGATGGCAATGGAAATGTTAAGAAGAGGAAGACTGAAAGAGTGGTAACGCCGAGAGTAATGAATGCTACTGCAAGTTTTGGCAGTGGGAGTGGTAGTGTGCCAGAAATGCTCAAGGAGTTTTTGAAGCAGCAGCAGAGGATGGAGATTGAGTGGAGAGAAATGATGGAGAGACGAGCACGGGAACGACAGTTGTTTGAGCAGGAATGGCGGCAGAGAATGGTGAAAGTGGAGCGAGAGCGGTTAATGGTTGAGAAAGCTTGGAGGGAGAGGGAAGAACAGAGGAGGATGAGAGATGAGAGCAGAGCTGAGAGGAGGGATGCCCTTGTAACCAGCATCTTGAACAAGCTTATCGATGAAACAAACTTCTGA

Protein Analysis

280

Amino Acids

32.74

Weight (kDa)

8.91

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 27 - 109 2e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015634)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24280 FvH4_5g24280 FvH4_5g24280
malus_domestica MD06G1021000.v1.1
prunus_persica Prupe.5G017700_v2.0.a1
pyrus_communis pycom06g01530
rosa_chinensis RchiOBHm_Chr7g0214511
rosa_laevigata RLG00000002743
rosa_multiflora Rmu_sc0004199.1_g000042
rosa_roxburghii Rroxscaffold_3G00245280
rosa_rugosa Rorug07G0145800
rosa_samantha Rh7AG281500 Rh7BG273100 Rh7CG300800 Rh7DG285600
rosa_wichuraiana Rw7G024080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 709
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 5 cut(s) 9, 12, 380, 679, 709
AclWI GGATC 2 cut(s) 109, 275
AcoI YGGCCR 2 cut(s) 147, 195
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 4 cut(s) 217, 290, 402, 460
AgsI TTSAA 5 cut(s) 208, 314, 371, 595, 811
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 6 cut(s) 106, 127, 183, 728, 776, 817
AluI AGCT 6 cut(s) 106, 127, 183, 728, 776, 817
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 6 cut(s) 12, 89, 266, 281, 352, 634
AlwI GGATC 2 cut(s) 109, 275
AlwNI CAGNNNCTG 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 390
Aor13HI TCCGGA 1 cut(s) 283
AoxI GGCC 4 cut(s) 85, 147, 195, 393
ApaI GGGCCC 1 cut(s) 89
ApeKI GCWGC 4 cut(s) 156, 364, 598, 601
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 85, 86, 393
AsuC2I CCSGG 3 cut(s) 89, 391, 392
AsuHPI GGTGA 2 cut(s) 73, 703
AvaI CYCGRG 1 cut(s) 390
BaeGI GKGCMC 1 cut(s) 89
BalI TGGCCA 1 cut(s) 149
BanII GRGCYC 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 456, 506
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 4 cut(s) 168, 351, 610, 613
BccI CCATC 4 cut(s) 52, 467, 604, 628
BceAI ACGGC 2 cut(s) 22, 161
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 3 cut(s) 89, 391, 392
BcoDI GTCTC 6 cut(s) 12, 89, 266, 281, 352, 634
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 6 cut(s) 10, 157, 365, 599, 602, 680
BlsI GCNGC 6 cut(s) 11, 158, 366, 600, 603, 681
Bme1390I CCNGG 4 cut(s) 89, 199, 391, 392
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 3 cut(s) 85, 86, 393
BmiI GGNNCC 2 cut(s) 86, 87
BmrFI CCNGG 4 cut(s) 89, 199, 391, 392
BmsI GCATC 2 cut(s) 778, 813
BpiI GAAGAC 2 cut(s) 456, 506
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 3 cut(s) 89, 391, 392
Bsa29I ATCGAT 1 cut(s) 822
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 4 cut(s) 118, 198, 375, 390
BsaWI WCCGGW 1 cut(s) 283
BsaXI ACNNNNNCTCC 4 cut(s) 550, 580, 605, 635
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 290, 402, 460
Bse3DI GCAATG 1 cut(s) 484
Bse8I GATNNNNATC 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 822
BseDI CCNNGG 4 cut(s) 118, 198, 375, 390
BseGI GGATG 8 cut(s) 31, 60, 195, 469, 475, 615, 762, 793
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 4 cut(s) 217, 290, 402, 460
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 327, 768
BseRI GAGGAG 6 cut(s) 30, 107, 130, 239, 766, 796
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 4 cut(s) 168, 351, 610, 613
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 4 cut(s) 87, 149, 197, 395
BshVI ATCGAT 1 cut(s) 822
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 3 cut(s) 89, 284, 391
BslFI GGGAC 2 cut(s) 58, 149
BslI CCNNNNNNNGG 4 cut(s) 217, 290, 402, 460
BsmAI GTCTC 6 cut(s) 12, 89, 266, 281, 352, 634
BsmBI CGTCTC 5 cut(s) 12, 89, 266, 281, 634
BsmFI GGGAC 2 cut(s) 58, 149
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 4 cut(s) 87, 149, 197, 395
BsoBI CYCGRG 1 cut(s) 390
Bsp120I GGGCCC 1 cut(s) 85
Bsp1286I GDGCHC 2 cut(s) 89, 649
Bsp13I TCCGGA 1 cut(s) 283
Bsp143I GATC 4 cut(s) 108, 114, 280, 428
Bsp68I TCGCGA 1 cut(s) 113
BspACI CCGC 5 cut(s) 9, 12, 380, 679, 709
BspANI GGCC 4 cut(s) 87, 149, 197, 395
BspCNI CTCAG 2 cut(s) 328, 769
BspDI ATCGAT 1 cut(s) 822
BspEI TCCGGA 1 cut(s) 283
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 86, 87
BspPI GGATC 2 cut(s) 109, 275
BsrBI CCGCTC 1 cut(s) 709
BsrDI GCAATG 1 cut(s) 484
BssECI CCNNGG 4 cut(s) 118, 198, 375, 390
BssMI GATC 4 cut(s) 108, 114, 280, 428
BssNI GRCGYC 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 225, 660
Bst6I CTCTTC 2 cut(s) 395, 488
BstACI GRCGYC 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 336, 777
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 8 cut(s) 31, 60, 195, 469, 475, 615, 762, 793
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 4 cut(s) 111, 117, 283, 431
BstMAI GTCTC 6 cut(s) 12, 89, 266, 281, 352, 634
BstMBI GATC 4 cut(s) 108, 114, 280, 428
BstMWI GCNNNNNNNGC 3 cut(s) 361, 577, 676
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 4 cut(s) 87, 197, 389, 390
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 89
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 4 cut(s) 168, 351, 610, 613
BstV2I GAAGAC 2 cut(s) 456, 506
Bsu15I ATCGAT 1 cut(s) 822
BsuRI GGCC 4 cut(s) 87, 149, 197, 395
BsuTUI ATCGAT 1 cut(s) 822
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 8 cut(s) 31, 60, 195, 469, 475, 615, 762, 793
BtsI GCAGTG 2 cut(s) 86, 559
BtsIMutI CAGTG 3 cut(s) 86, 230, 559
BtuMI TCGCGA 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 361
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 3 cut(s) 85, 86, 393
Cfr9I CCCGGG 1 cut(s) 390
ClaI ATCGAT 1 cut(s) 822
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 34
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 336, 777
DpnI GATC 4 cut(s) 110, 116, 282, 430
DpnII GATC 4 cut(s) 108, 114, 280, 428
EaeI YGGCCR 2 cut(s) 147, 195
Eam1104I CTCTTC 2 cut(s) 395, 488
EarI CTCTTC 2 cut(s) 395, 488
EciI GGCGGA 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 89
Esp3I CGTCTC 5 cut(s) 12, 89, 266, 281, 634
FaeI CATG 1 cut(s) 37
FaiI YATR 2 cut(s) 35, 353
FaqI GGGAC 2 cut(s) 58, 149
FatI CATG 1 cut(s) 33
FauI CCCGC 1 cut(s) 373
Fnu4HI GCNGC 6 cut(s) 10, 157, 365, 599, 602, 680
FokI GGATG 8 cut(s) 38, 67, 202, 476, 482, 622, 769, 800
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 6 cut(s) 10, 157, 365, 599, 602, 680
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 155
GluI GCNGC 6 cut(s) 10, 157, 365, 599, 602, 680
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 4 cut(s) 87, 149, 197, 395
HapII CCGG 3 cut(s) 89, 284, 391
HhaI GCGC 1 cut(s) 156
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 2 cut(s) 726, 815
HinfI GANTC 2 cut(s) 137, 371
HpaII CCGG 3 cut(s) 89, 284, 391
HphI GGTGA 2 cut(s) 73, 703
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 6 cut(s) 220, 280, 376, 436, 448, 839
Hpy188III TCNNGA 4 cut(s) 43, 112, 284, 808
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 225, 660
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 5 cut(s) 228, 234, 322, 355, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 361, 577, 676
HpyF3I CTNAG 2 cut(s) 336, 777
HpySE526I ACGT 1 cut(s) 275
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 154
Kpn2I TCCGGA 1 cut(s) 283
Kzo9I GATC 4 cut(s) 108, 114, 280, 428
LmnI GCTCC 3 cut(s) 103, 124, 700
Lsp1109I GCAGC 4 cut(s) 168, 351, 610, 613
LweI GCATC 2 cut(s) 778, 813
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 3 cut(s) 61, 514, 796
MalI GATC 4 cut(s) 110, 116, 282, 430
MbiI CCGCTC 1 cut(s) 709
MboI GATC 4 cut(s) 108, 114, 280, 428
MboII GAAGA 7 cut(s) 253, 326, 412, 461, 505, 511, 755
MhlI GDGCHC 2 cut(s) 89, 649
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 1 cut(s) 317
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 414
Mox20I TGGCCA 1 cut(s) 149
MroI TCCGGA 1 cut(s) 283
MscI TGGCCA 1 cut(s) 149
MseI TTAA 3 cut(s) 408, 489, 713
Msp20I TGGCCA 1 cut(s) 149
MspI CCGG 3 cut(s) 89, 284, 391
MspR9I CCNGG 4 cut(s) 89, 199, 391, 392
Mva1269I GAATGC 1 cut(s) 538
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 361, 577, 676
NciI CCSGG 3 cut(s) 89, 391, 392
NdeII GATC 4 cut(s) 108, 114, 280, 428
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 2 cut(s) 86, 87
NmeAIII GCCGAG 1 cut(s) 546
NmuCI GTSAC 1 cut(s) 61
NruI TCGCGA 1 cut(s) 113
PctI GAATGC 1 cut(s) 538
PfeI GAWTC 1 cut(s) 371
PkrI GCNGC 6 cut(s) 11, 158, 366, 600, 603, 681
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 86, 87
PspOMI GGGCCC 1 cut(s) 85
PspPI GGNCC 3 cut(s) 85, 86, 393
PstNI CAGNNNCTG 1 cut(s) 361
RruI TCGCGA 1 cut(s) 113
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 408, 489, 713
SatI GCNGC 6 cut(s) 10, 157, 365, 599, 602, 680
Sau3AI GATC 4 cut(s) 108, 114, 280, 428
Sau96I GGNCC 3 cut(s) 85, 86, 393
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 4 cut(s) 89, 199, 391, 392
SduI GDGCHC 2 cut(s) 89, 649
SfaNI GCATC 2 cut(s) 778, 813
SfcI CTRYAG 1 cut(s) 72
SmaI CCCGGG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 1 cut(s) 317
SsiI CCGC 5 cut(s) 9, 12, 380, 679, 709
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 4 cut(s) 87, 197, 389, 390
TaaI ACNGT 2 cut(s) 225, 660
TaiI ACGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 256, 822
TasI AATT 1 cut(s) 317
TauI GCSGC 2 cut(s) 12, 682
TfiI GAWTC 1 cut(s) 371
Tru1I TTAA 3 cut(s) 408, 489, 713
Tru9I TTAA 3 cut(s) 408, 489, 713
TscAI CASTG 3 cut(s) 86, 230, 559
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 4 cut(s) 156, 364, 598, 601
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 545, 840
TspGWI ACGGA 2 cut(s) 107, 294
TspMI CCCGGG 1 cut(s) 390
TspRI CASTG 3 cut(s) 86, 230, 559
XmaI CCCGGG 1 cut(s) 390
XspI CTAG 1 cut(s) 186
ZraI GACGTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.