Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015634

Physical Location & Seq

Genomic Coordinates Reverse (-)

1889790 .. 1891650

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G017700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTATGGGGCAGGAGGAGACGAGGAAGAGGGCATGGCAATGGGAATGGGAAGTGGAGGAACAGGGATGATGAAGAAGATGATGACCAGTCCTGCAGGGGGAGGGTCAGGACAGTGGGCCCCAGAGGAGACGAGGGAGCTGATCGCCATCCGTGGAGAACTGGAGATCAGGAACTCCAATTTGGCGAAGCGCAGCAAGGCGCTGTGGGAAGCAGTGAGCTCTAAGATGGCCGAGAGAGGCTTCAACAGAACCCCCGAGCAGTGCAAATGCAAGTGGAAGAACCTCCTCATTCGTTACAAGGGGAAGGAGACGTCTGATCCGGAGAGTGGGCGGGAGTGTCCCTTCTTTGAGGAATTGCAGGCAGTGTTTACTGAAAGAGCAAATAATATGCAGCGCTTACTTCTTGAATCCGAGACCGGTTCAGCCCGGTCCAAGAAAATGGGGAAGAGGAAATTGAGGCCGGGCCGATCCTCGGACGAGTTCTCAGAGGACCCAGATGAAGAGGATGAGGATGATAAGAAGAGGAAGGGTGAAAGAGTAATTATGCCAAAAGCAACCAATGCTGCTAGTGGGACTAGTAGTAGTAGTATCCAGGATATGCTTAAGGCGTTTTTTCAGCAGCAGCAGAGGATGGAGATGGAATGGAGGGAAATGATGGAGAGGCGGGCGCAGGAGCGGCGGATGTTTGAGCAGGAATGGCGGCAGAAGATGGAGAAGGTGGAGAGGGAGAGGTTAATGGTGGAGCAGGCTTGGAGGGAGAGGGAAGAACAGAGAAGGATAAGAGAAGAGAGCAGAGCTGAGAGGAGAGATGCCCTGCTGACCACTCTCTTGAATAAACTTATCAATCAAACTAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

287

Amino Acids

33.26

Weight (kDa)

8.66

Isoelectric Point (pI)

63.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g24280 FvH4_5g24280 FvH4_5g24280
malus_domestica	MD06G1021000.v1.1
prunus_persica	Prupe.5G017700_v2.0.a1
pyrus_communis	pycom06g01530
rosa_chinensis	RchiOBHm_Chr7g0214511
rosa_laevigata	RLG00000002743
rosa_multiflora	Rmu_sc0004199.1_g000042
rosa_roxburghii	Rroxscaffold_3G00245280
rosa_rugosa	Rorug07G0145800
rosa_samantha	Rh7AG281500 Rh7BG273100 Rh7CG300800 Rh7DG285600
rosa_wichuraiana	Rw7G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	676
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	5 cut(s)	331, 664, 676, 679, 700
AclWI	GGATC	2 cut(s)	311, 462
AcoI	YGGCCR	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	311
AfeI	AGCGCT	1 cut(s)	395
AfiI	CCNNNNNNNGG	3 cut(s)	98, 326, 472
AflII	CTTAAG	1 cut(s)	602
AgeI	ACCGGT	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	244, 407, 832
AhlI	ACTAGT	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	591
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	3 cut(s)	139, 219, 797
AluI	AGCT	3 cut(s)	139, 219, 797
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	4 cut(s)	12, 122, 302, 407
AlwI	GGATC	2 cut(s)	311, 462
Ama87I	CYCGRG	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	319
Aor51HI	AGCGCT	1 cut(s)	395
AoxI	GGCC	4 cut(s)	117, 228, 458, 463
ApaI	GGGCCC	1 cut(s)	121
ApeKI	GCWGC	5 cut(s)	192, 391, 563, 619, 622
AsiGI	ACCGGT	1 cut(s)	416
AspLEI	GCGC	4 cut(s)	192, 202, 396, 670
AspS9I	GGNCC	5 cut(s)	117, 118, 429, 463, 490
AsuC2I	CCSGG	2 cut(s)	427, 462
AsuHPI	GGTGA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	429, 490
BaeGI	GKGCMC	1 cut(s)	121
BanII	GRGCYC	2 cut(s)	121, 221
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	5 cut(s)	204, 403, 550, 631, 634
BccI	CCATC	6 cut(s)	155, 220, 625, 631, 649, 703
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	599
BcnI	CCSGG	2 cut(s)	427, 462
BcoDI	GTCTC	4 cut(s)	12, 122, 302, 407
BcuI	ACTAGT	1 cut(s)	575
BfaI	CTAG	2 cut(s)	567, 576
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	2 cut(s)	203, 397
BfrI	CTTAAG	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	599
BisI	GCNGC	7 cut(s)	193, 392, 564, 620, 623, 677, 701
BlsI	GCNGC	7 cut(s)	194, 393, 565, 621, 624, 678, 702
Bme1390I	CCNGG	3 cut(s)	427, 462, 593
Bme18I	GGWCC	2 cut(s)	429, 490
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	5 cut(s)	117, 118, 429, 463, 490
BmiI	GGNNCC	3 cut(s)	119, 120, 492
BmrFI	CCNGG	3 cut(s)	427, 462, 593
BmsI	GCATC	1 cut(s)	799
BpmI	CTGGAG	1 cut(s)	182
BpuMI	CCSGG	2 cut(s)	427, 462
BsaBI	GATNNNNATC	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	151, 471
BsaWI	WCCGGW	2 cut(s)	319, 416
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 326, 472
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	2 cut(s)	87, 165
Bse3DI	GCAATG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	146
BseAI	TCCGGA	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	151, 471
BseGI	GGATG	6 cut(s)	72, 147, 511, 517, 636, 687
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	3 cut(s)	98, 326, 472
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	498, 789
BseNI	ACTGG	2 cut(s)	87, 165
BseRI	GAGGAG	4 cut(s)	30, 140, 275, 817
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	5 cut(s)	204, 403, 550, 631, 634
BshFI	GGCC	4 cut(s)	119, 230, 460, 465
BshTI	ACCGGT	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	4 cut(s)	320, 417, 427, 461
BslFI	GGGAC	2 cut(s)	324, 586
BslI	CCNNNNNNNGG	3 cut(s)	98, 326, 472
BsmAI	GTCTC	4 cut(s)	12, 122, 302, 407
BsmBI	CGTCTC	3 cut(s)	12, 122, 302
BsmFI	GGGAC	2 cut(s)	324, 586
BsnI	GGCC	4 cut(s)	119, 230, 460, 465
Bso31I	GGTCTC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	254
Bsp120I	GGGCCC	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	121, 221
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	4 cut(s)	141, 165, 316, 467
BspACI	CCGC	5 cut(s)	331, 664, 676, 679, 700
BspANI	GGCC	4 cut(s)	119, 230, 460, 465
BspCNI	CTCAG	2 cut(s)	497, 790
BspEI	TCCGGA	1 cut(s)	319
BspLI	GGNNCC	3 cut(s)	119, 120, 492
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	2 cut(s)	311, 462
BspTI	CTTAAG	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	87, 165
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	151, 471
BssMI	GATC	4 cut(s)	141, 165, 316, 467
BssNI	GRCGYC	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	5 cut(s)	21, 440, 495, 515, 780
BstACI	GRCGYC	1 cut(s)	311
BstAFI	CTTAAG	1 cut(s)	602
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	360, 666, 747
BstDEI	CTNAG	3 cut(s)	222, 484, 798
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	6 cut(s)	72, 147, 511, 517, 636, 687
BstH2I	RGCGCY	2 cut(s)	203, 397
BstHHI	GCGC	4 cut(s)	192, 202, 396, 670
BstKTI	GATC	4 cut(s)	144, 168, 319, 470
BstMAI	GTCTC	4 cut(s)	12, 122, 302, 407
BstMBI	GATC	4 cut(s)	141, 165, 316, 467
BstMWI	GCNNNNNNNGC	3 cut(s)	560, 676, 697
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	3 cut(s)	425, 460, 591
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	121
BstV1I	GCAGC	5 cut(s)	204, 403, 550, 631, 634
BstXI	CCANNNNNNTGG	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	599
BsuRI	GGCC	4 cut(s)	119, 230, 460, 465
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	6 cut(s)	72, 147, 511, 517, 636, 687
BtsI	GCAGTG	3 cut(s)	219, 266, 369
BtsIMutI	CAGTG	4 cut(s)	119, 219, 266, 369
Cac8I	GCNNGC	3 cut(s)	360, 666, 747
CfoI	GCGC	4 cut(s)	192, 202, 396, 670
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	5 cut(s)	117, 118, 429, 463, 490
CspAI	ACCGGT	1 cut(s)	416
CviAII	CATG	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	222, 484, 798
DpnI	GATC	4 cut(s)	143, 167, 318, 469
DpnII	GATC	4 cut(s)	141, 165, 316, 467
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	5 cut(s)	21, 440, 495, 515, 780
EarI	CTCTTC	5 cut(s)	21, 440, 495, 515, 780
EciI	GGCGGA	1 cut(s)	694
Ecl136II	GAGCTC	1 cut(s)	219
Eco24I	GRGCYC	2 cut(s)	121, 221
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	429, 490
Eco47III	AGCGCT	1 cut(s)	395
Eco53kI	GAGCTC	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	219
EcoO109I	RGGNCCY	2 cut(s)	118, 490
EcoRII	CCWGG	1 cut(s)	591
EcoT38I	GRGCYC	2 cut(s)	121, 221
Esp3I	CGTCTC	3 cut(s)	12, 122, 302
FaeI	CATG	1 cut(s)	37
FaiI	YATR	5 cut(s)	6, 35, 389, 545, 599
FaqI	GGGAC	2 cut(s)	324, 586
FatI	CATG	1 cut(s)	33
FauI	CCCGC	2 cut(s)	324, 657
Fnu4HI	GCNGC	7 cut(s)	193, 392, 564, 620, 623, 677, 701
FokI	GGATG	6 cut(s)	79, 134, 518, 524, 643, 694
FriOI	GRGCYC	2 cut(s)	121, 221
Fsp4HI	GCNGC	7 cut(s)	193, 392, 564, 620, 623, 677, 701
FspBI	CTAG	2 cut(s)	567, 576
GlaI	GCGC	4 cut(s)	191, 201, 395, 669
GluI	GCNGC	7 cut(s)	193, 392, 564, 620, 623, 677, 701
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	2 cut(s)	203, 397
HaeIII	GGCC	4 cut(s)	119, 230, 460, 465
HapII	CCGG	4 cut(s)	320, 417, 427, 461
HhaI	GCGC	4 cut(s)	192, 202, 396, 670
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	4 cut(s)	190, 200, 394, 668
HinP1I	GCGC	4 cut(s)	190, 200, 394, 668
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	4 cut(s)	320, 417, 427, 461
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	369
Hpy188I	TCNGA	4 cut(s)	316, 412, 475, 487
Hpy188III	TCNNGA	5 cut(s)	108, 169, 320, 404, 829
Hpy8I	GTNNAC	1 cut(s)	369
HpyAV	CCTTC	5 cut(s)	298, 352, 520, 709, 768
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	5 cut(s)	95, 264, 270, 358, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	560, 676, 697
HpyF3I	CTNAG	3 cut(s)	222, 484, 798
HpySE526I	ACGT	1 cut(s)	311
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	4 cut(s)	190, 200, 394, 668
Kpn2I	TCCGGA	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	141, 165, 316, 467
LmnI	GCTCC	3 cut(s)	136, 673, 742
Lsp1109I	GCAGC	5 cut(s)	204, 403, 550, 631, 634
LweI	GCATC	1 cut(s)	799
MaeI	CTAG	2 cut(s)	567, 576
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	4 cut(s)	143, 167, 318, 469
MbiI	CCGCTC	1 cut(s)	676
MboI	GATC	4 cut(s)	141, 165, 316, 467
MhlI	GDGCHC	2 cut(s)	121, 221
MluCI	AATT	5 cut(s)	178, 353, 452, 540, 853
MroI	TCCGGA	1 cut(s)	319
MseI	TTAA	3 cut(s)	603, 734, 859
MslI	CAYNNNNRTG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	602
MspI	CCGG	4 cut(s)	320, 417, 427, 461
MspR9I	CCNGG	3 cut(s)	427, 462, 593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	3 cut(s)	560, 676, 697
NciI	CCSGG	2 cut(s)	427, 462
NdeII	GATC	4 cut(s)	141, 165, 316, 467
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	3 cut(s)	119, 120, 492
NmeAIII	GCCGAG	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	407
PfoI	TCCNGGA	1 cut(s)	591
PinAI	ACCGGT	1 cut(s)	416
PkrI	GCNGC	7 cut(s)	194, 393, 565, 621, 624, 678, 702
PpuMI	RGGWCCY	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	3 cut(s)	119, 120, 492
PspOMI	GGGCCC	1 cut(s)	117
PspPI	GGNCC	5 cut(s)	117, 118, 429, 463, 490
PspPPI	RGGWCCY	1 cut(s)	490
PstI	CTGCAG	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	603, 734, 859
SatI	GCNGC	7 cut(s)	193, 392, 564, 620, 623, 677, 701
Sau3AI	GATC	4 cut(s)	141, 165, 316, 467
Sau96I	GGNCC	5 cut(s)	117, 118, 429, 463, 490
SbfI	CCTGCAGG	1 cut(s)	97
ScrFI	CCNGG	3 cut(s)	427, 462, 593
SdaI	CCTGCAGG	1 cut(s)	97
SduI	GDGCHC	2 cut(s)	121, 221
SetI	ASST	7 cut(s)	141, 221, 285, 314, 720, 734, 799
SfaNI	GCATC	1 cut(s)	799
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	2 cut(s)	429, 490
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SpeI	ACTAGT	1 cut(s)	575
Sse8387I	CCTGCAGG	1 cut(s)	97
Sse9I	AATT	5 cut(s)	178, 353, 452, 540, 853
SsiI	CCGC	5 cut(s)	331, 664, 676, 679, 700
SspMI	CTAG	2 cut(s)	567, 576
SstI	GAGCTC	1 cut(s)	221
StyD4I	CCNGG	3 cut(s)	425, 460, 591
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	314
TasI	AATT	5 cut(s)	178, 353, 452, 540, 853
TauI	GCSGC	2 cut(s)	679, 703
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	603, 734, 859
Tru9I	TTAA	3 cut(s)	603, 734, 859
TscAI	CASTG	4 cut(s)	119, 219, 266, 369
TseI	GCWGC	5 cut(s)	192, 391, 563, 619, 622
TspDTI	ATGAA	2 cut(s)	86, 513
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	4 cut(s)	119, 219, 266, 369
Vha464I	CTTAAG	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	429, 490
XspI	CTAG	2 cut(s)	567, 576
ZraI	GACGTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.