Rh6BG517300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017609
Physical Location & Seq
Forward (+)
71138209 .. 71139390
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG517300.1

Sequence Viewer

Length: 702 bp
ATGGGAAGAAGCAGCTCTCGTTGTGATAAGGAGGGAGCGAACAAAGGAGCCTGGACTGCTCATGAAGATCAGGTTCTGAGAGATTATGTCAAAGAGTACGGTGAAGGGAAATGGGGGAAAATGTCGAGGGAAACAGGTCTGAAGAGATGTGGAAAGAGTTGCAGGCTTAGGTGGTTGAATTATCTGAGGCCTGATATCAAGAGAGGGAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTTCACAAACTCTTAGGCAACAGATGGTCATTGATAGCTGGAAGGCTTCCAGGGCGAACAGACAATGAGATAAAGAACTATTGGAATTCTACCATAAGGAAGAAACAGGAAAACAGCTCAAGACGGTCTAGAAACGAGAGGAAAACCATCAAGGACCCTTATTTTACCAACAATGAAATCAGACCAACAAGCAGCACCAGAAATGAATTAGCAGAACAACCATTTCTCTCTGGAGTTGAAAGGAATATTAAGGCAGAACCAGATTCTGGTGATGGATTCTTGCAGACCACTGGTGGAAGTGGTATGGGCCGTATGGCATGGAACTTCATAATGGATCTAAATGCAGGGCCACTTAGCATATCTGAGTTTCTTCATACCGACTTCTCTAAGCTTTGTGAATTGAATACCATGGTCGCCGACTGCACGAATGGTGCCGACATCGGTCATTTAGAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

233

Amino Acids

26.58

Weight (kDa)

8.94

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 8.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 76 3e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 111 7.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 119 6.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31060
malus_domestica MD08G1070900.v1.1
prunus_persica Prupe.1G405100_v2.0.a1
pyrus_communis pycom08g05870
rosa_chinensis RchiOBHm_Chr6g0311741
rosa_laevigata RLG00000010378
rosa_multiflora Rmu_sc0002888.1_g000037
rosa_roxburghii Rroxscaffold_7G00157350
rosa_samantha Rh6AG506700 Rh6BG517300 Rh6DG508900
rosa_wichuraiana Rw6G044070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 509
AclWI GGATC 1 cut(s) 585
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 509
AgsI TTSAA 3 cut(s) 178, 482, 646
AjnI CCWGG 2 cut(s) 50, 292
AluBI AGCT 5 cut(s) 15, 232, 281, 360, 634
AluI AGCT 5 cut(s) 15, 232, 281, 360, 634
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 1 cut(s) 585
AlwNI CAGNNNCTG 2 cut(s) 76, 509
AoxI GGCC 3 cut(s) 188, 550, 590
ApeKI GCWGC 2 cut(s) 12, 435
ApoI RAATTY 1 cut(s) 328
AspS9I GGNCC 3 cut(s) 397, 550, 590
AsuHPI GGTGA 2 cut(s) 113, 524
AvaII GGWCC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 674
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 24, 447
BccI CCATC 3 cut(s) 261, 398, 509
BceAI ACGGC 1 cut(s) 537
BciT130I CCWGG 2 cut(s) 52, 294
BfaI CTAG 1 cut(s) 372
BisI GCNGC 2 cut(s) 13, 436
BlsI GCNGC 2 cut(s) 14, 437
Bme1390I CCNGG 2 cut(s) 52, 294
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 3 cut(s) 397, 550, 590
BmiI GGNNCC 3 cut(s) 49, 399, 676
BmrFI CCNGG 2 cut(s) 52, 294
BoxI GACNNNNGTC 1 cut(s) 684
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 293, 651
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 538
BseBI CCWGG 2 cut(s) 52, 294
BseDI CCNNGG 2 cut(s) 293, 651
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMII CTCAG 3 cut(s) 68, 176, 597
BseNI ACTGG 1 cut(s) 538
BseXI GCAGC 2 cut(s) 24, 447
BsgI GTGCAG 1 cut(s) 649
BshFI GGCC 3 cut(s) 190, 552, 592
BshNI GGYRCC 1 cut(s) 674
BsiHKAI GWGCWC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 509
BsnI GGCC 3 cut(s) 190, 552, 592
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 67, 577
Bsp19I CCATGG 1 cut(s) 651
BspANI GGCC 3 cut(s) 190, 552, 592
BspCNI CTCAG 3 cut(s) 69, 177, 598
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 49, 399, 676
BspPI GGATC 1 cut(s) 585
BspQI GCTCTTC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 674
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 2 cut(s) 293, 651
BssMI GATC 2 cut(s) 67, 577
BssT1I CCWWGG 1 cut(s) 651
Bst2UI CCWGG 2 cut(s) 52, 294
Bst4CI ACNGT 2 cut(s) 101, 369
Bst6I CTCTTC 2 cut(s) 137, 222
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 7 cut(s) 77, 167, 185, 256, 596, 606, 630
BstDSI CCRYGG 1 cut(s) 651
BstKTI GATC 2 cut(s) 70, 580
BstMBI GATC 2 cut(s) 67, 577
BstMWI GCNNNNNNNGC 2 cut(s) 56, 295
BstNI CCWGG 2 cut(s) 52, 294
BstPAI GACNNNNGTC 1 cut(s) 684
BstSCI CCNGG 2 cut(s) 50, 292
BstV1I GCAGC 2 cut(s) 24, 447
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 3 cut(s) 190, 552, 592
BtgI CCRYGG 1 cut(s) 651
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 1 cut(s) 164
CaiI CAGNNNCTG 2 cut(s) 76, 509
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 397, 550, 590
Csp6I GTAC 1 cut(s) 97
CviAII CATG 3 cut(s) 62, 561, 652
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 7 cut(s) 77, 167, 185, 256, 596, 606, 630
DpnI GATC 2 cut(s) 69, 579
DpnII GATC 2 cut(s) 67, 577
Eam1104I CTCTTC 2 cut(s) 137, 222
EarI CTCTTC 2 cut(s) 137, 222
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 651
Eco147I AGGCCT 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 234
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 50, 292
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 651
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 3 cut(s) 65, 564, 655
FatI CATG 3 cut(s) 61, 560, 651
Fnu4HI GCNGC 2 cut(s) 13, 436
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 13, 436
FspBI CTAG 1 cut(s) 372
GluI GCNGC 2 cut(s) 13, 436
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 3 cut(s) 190, 552, 592
Hin1II CATG 3 cut(s) 65, 564, 655
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 2 cut(s) 506, 519
HphI GGTGA 2 cut(s) 113, 524
Hpy188I TCNGA 5 cut(s) 78, 141, 186, 425, 607
Hpy188III TCNNGA 5 cut(s) 62, 199, 363, 372, 474
HpyAV CCTTC 2 cut(s) 98, 279
HpyCH4III ACNGT 2 cut(s) 101, 369
HpyCH4V TGCA 4 cut(s) 162, 526, 587, 666
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 295
HpyF3I CTNAG 7 cut(s) 77, 167, 185, 256, 596, 606, 630
Hsp92II CATG 3 cut(s) 65, 564, 655
Kzo9I GATC 2 cut(s) 67, 577
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 35, 47
Lsp1109I GCAGC 2 cut(s) 24, 447
MaeI CTAG 1 cut(s) 372
MalI GATC 2 cut(s) 69, 579
MboI GATC 2 cut(s) 67, 577
MboII GAAGA 8 cut(s) 18, 77, 154, 230, 236, 239, 355, 605
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 4 cut(s) 178, 328, 449, 641
MnlI CCTC 5 cut(s) 25, 120, 180, 197, 375
MseI TTAA 1 cut(s) 492
MspR9I CCNGG 2 cut(s) 52, 294
MvaI CCWGG 2 cut(s) 52, 294
MwoI GCNNNNNNNGC 2 cut(s) 56, 295
NcoI CCATGG 1 cut(s) 651
NdeII GATC 2 cut(s) 67, 577
NlaIII CATG 3 cut(s) 65, 564, 655
NlaIV GGNNCC 3 cut(s) 49, 399, 676
PagI TCATGA 1 cut(s) 61
PceI AGGCCT 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 506, 519
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 2 cut(s) 14, 437
PpuMI RGGWCCY 1 cut(s) 397
PshAI GACNNNNGTC 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 2 cut(s) 50, 292
PspGI CCWGG 2 cut(s) 50, 292
PspN4I GGNNCC 3 cut(s) 49, 399, 676
PspPI GGNCC 3 cut(s) 397, 550, 590
PspPPI RGGWCCY 1 cut(s) 397
PstNI CAGNNNCTG 2 cut(s) 76, 509
PsuI RGATCY 1 cut(s) 577
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 2 cut(s) 13, 436
Sau3AI GATC 2 cut(s) 67, 577
Sau96I GGNCC 3 cut(s) 397, 550, 590
ScrFI CCNGG 2 cut(s) 52, 294
SduI GDGCHC 1 cut(s) 234
SetI ASST 8 cut(s) 17, 75, 139, 173, 234, 283, 362, 636
SinI GGWCC 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 4 cut(s) 178, 328, 449, 641
SseBI AGGCCT 1 cut(s) 190
SspI AATATT 1 cut(s) 490
SspMI CTAG 1 cut(s) 372
SstI GAGCTC 1 cut(s) 234
StuI AGGCCT 1 cut(s) 190
StyD4I CCNGG 2 cut(s) 50, 292
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 2 cut(s) 101, 369
TaqI TCGA 1 cut(s) 125
TaqII GACCGA 1 cut(s) 674
TasI AATT 4 cut(s) 178, 328, 449, 641
TfiI GAWTC 2 cut(s) 506, 519
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 1 cut(s) 538
TseI GCWGC 2 cut(s) 12, 435
TspDTI ATGAA 6 cut(s) 78, 237, 432, 462, 559, 605
TspRI CASTG 1 cut(s) 538
Van91I CCANNNNNTGG 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 1 cut(s) 328
XbaI TCTAGA 1 cut(s) 371
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.