FvH4_2g31060
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017609
Physical Location & Seq
Reverse (-)
23900586 .. 23901798
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31060.t1

Sequence Viewer

Length: 687 bp
ATGGGAAGAAGCAGCTCTCGTTGTGATAAGGAGGGAGCAAACAAAGGGGCCTGGACTGCTCATGAAGATCAGGTTCTGAGAGACTATGTCAAAGAGAACGGTGAAGGGAAATGGGGGAAAATGTCGAGGGAAACAGGTCTGAAGAGATGTGGAAAGAGTTGCAGGCTAAGGTGGTTGAATTATCTGAGGCCTGATATCAAGAGAGGAAACATTACAGAGGATGAAGAAGAGCTCATCATTAGGCTTCATAAACTCTTAGGCAACAGATGGTCACTGATAGCCGGAAGGCTTCCAGGGCGAACAGACAATGAGATAAAGAACTACTGGAATTCTACCTTAAGGAAGAAACAGGAAAACAGCTCAAGACGGTCTAGAAATGAGAGGAAAACCATCAAGGACCCTTATTTGACCAACAATGAAATCAGATCAACAAGCAGCACCAGAAATGAATCAGCAGAACAACCATTTCTCTCTGGAGTTGAAAGGACAGAATCAGATTCTGGTGATGGATTCTTGCCGACCACCACCGGTGAAAGTGATATGGCATGGAACTTCATAATGGATCTAAATGCAGGACAACTTAGCATATCTGAGTTTCTTCATACTGACTTCTCTAAGCTTTGTGAATTGAATACCATGGTCGTCGACTGCACGAATGGTGCAGACATCGGTCATTTAGAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

229

Amino Acids

26.04

Weight (kDa)

7.64

Isoelectric Point (pI)

53.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 6.8e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 76 2e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 112 4.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 119 3.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31060
malus_domestica MD08G1070900.v1.1
prunus_persica Prupe.1G405100_v2.0.a1
pyrus_communis pycom08g05870
rosa_chinensis RchiOBHm_Chr6g0311741
rosa_laevigata RLG00000010378
rosa_multiflora Rmu_sc0002888.1_g000037
rosa_roxburghii Rroxscaffold_7G00157350
rosa_samantha Rh6AG506700 Rh6BG517300 Rh6DG508900
rosa_wichuraiana Rw6G044070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 685
AccI GTMKAC 1 cut(s) 645
AclWI GGATC 1 cut(s) 570
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 161
AflII CTTAAG 1 cut(s) 337
AgeI ACCGGT 1 cut(s) 527
AgsI TTSAA 3 cut(s) 178, 482, 631
AjnI CCWGG 2 cut(s) 50, 292
AluBI AGCT 4 cut(s) 15, 232, 360, 619
AluI AGCT 4 cut(s) 15, 232, 360, 619
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 1 cut(s) 570
AlwNI CAGNNNCTG 2 cut(s) 76, 500
AoxI GGCC 2 cut(s) 48, 188
ApeKI GCWGC 2 cut(s) 12, 435
ApoI RAATTY 1 cut(s) 328
AsiGI ACCGGT 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 48, 397
AsuHPI GGTGA 3 cut(s) 113, 515, 542
AvaII GGWCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 24, 447
BccI CCATC 3 cut(s) 261, 398, 500
BciT130I CCWGG 2 cut(s) 52, 294
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 372
BfrI CTTAAG 1 cut(s) 337
BisI GCNGC 2 cut(s) 13, 436
BlsI GCNGC 2 cut(s) 14, 437
Bme1390I CCNGG 2 cut(s) 52, 294
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 48, 397
BmiI GGNNCC 2 cut(s) 49, 399
BmrFI CCNGG 2 cut(s) 52, 294
BoxI GACNNNNGTC 1 cut(s) 669
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 293, 636
BsaWI WCCGGW 1 cut(s) 527
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 2 cut(s) 52, 294
BseDI CCNNGG 2 cut(s) 293, 636
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 3 cut(s) 68, 176, 582
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 24, 447
BsgI GTGCAG 2 cut(s) 634, 681
BshFI GGCC 2 cut(s) 50, 190
BshTI ACCGGT 1 cut(s) 527
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 282, 528
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 2 cut(s) 50, 190
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 3 cut(s) 67, 425, 562
Bsp19I CCATGG 1 cut(s) 636
BspANI GGCC 2 cut(s) 50, 190
BspCNI CTCAG 3 cut(s) 69, 177, 583
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 49, 399
BspPI GGATC 1 cut(s) 570
BspQI GCTCTTC 1 cut(s) 222
BspTI CTTAAG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 2 cut(s) 293, 636
BssMI GATC 3 cut(s) 67, 425, 562
BssT1I CCWWGG 1 cut(s) 636
Bst2UI CCWGG 2 cut(s) 52, 294
Bst4CI ACNGT 2 cut(s) 101, 369
Bst6I CTCTTC 2 cut(s) 137, 222
BstAFI CTTAAG 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 7 cut(s) 77, 167, 185, 256, 581, 591, 615
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 3 cut(s) 70, 428, 565
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 3 cut(s) 67, 425, 562
BstMWI GCNNNNNNNGC 2 cut(s) 56, 295
BstNI CCWGG 2 cut(s) 52, 294
BstPAI GACNNNNGTC 1 cut(s) 669
BstSCI CCNGG 2 cut(s) 50, 292
BstV1I GCAGC 2 cut(s) 24, 447
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BsuRI GGCC 2 cut(s) 50, 190
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 164
CaiI CAGNNNCTG 2 cut(s) 76, 500
CciI TCATGA 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 2 cut(s) 48, 397
CspAI ACCGGT 1 cut(s) 527
CviAII CATG 3 cut(s) 62, 546, 637
DdeI CTNAG 7 cut(s) 77, 167, 185, 256, 581, 591, 615
DpnI GATC 3 cut(s) 69, 427, 564
DpnII GATC 3 cut(s) 67, 425, 562
Eam1104I CTCTTC 2 cut(s) 137, 222
EarI CTCTTC 2 cut(s) 137, 222
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 636
Eco147I AGGCCT 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 234
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 2 cut(s) 48, 397
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 50, 292
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 3 cut(s) 65, 549, 640
FatI CATG 3 cut(s) 61, 545, 636
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 2 cut(s) 13, 436
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 13, 436
FspBI CTAG 1 cut(s) 372
GluI GCNGC 2 cut(s) 13, 436
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 2 cut(s) 50, 190
HapII CCGG 2 cut(s) 282, 528
Hin1II CATG 3 cut(s) 65, 549, 640
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 4 cut(s) 449, 491, 497, 510
HpaII CCGG 2 cut(s) 282, 528
HphI GGTGA 3 cut(s) 113, 515, 542
Hpy166II GTNNAC 1 cut(s) 646
Hpy188I TCNGA 6 cut(s) 78, 141, 186, 425, 496, 592
Hpy188III TCNNGA 5 cut(s) 62, 199, 363, 372, 474
Hpy8I GTNNAC 1 cut(s) 646
Hpy99I CGWCG 1 cut(s) 647
HpyAV CCTTC 2 cut(s) 98, 279
HpyCH4III ACNGT 2 cut(s) 101, 369
HpyCH4V TGCA 4 cut(s) 162, 572, 651, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 295
HpyF3I CTNAG 7 cut(s) 77, 167, 185, 256, 581, 591, 615
Hsp92II CATG 3 cut(s) 65, 549, 640
Kzo9I GATC 3 cut(s) 67, 425, 562
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 35
Lsp1109I GCAGC 2 cut(s) 24, 447
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 270
MalI GATC 3 cut(s) 69, 427, 564
MboI GATC 3 cut(s) 67, 425, 562
MboII GAAGA 7 cut(s) 18, 77, 154, 236, 239, 355, 590
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 178, 328, 626
MnlI CCTC 6 cut(s) 25, 120, 180, 197, 211, 375
MseI TTAA 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 337
MspI CCGG 2 cut(s) 282, 528
MspR9I CCNGG 2 cut(s) 52, 294
MvaI CCWGG 2 cut(s) 52, 294
MwoI GCNNNNNNNGC 2 cut(s) 56, 295
NcoI CCATGG 1 cut(s) 636
NdeII GATC 3 cut(s) 67, 425, 562
NlaIII CATG 3 cut(s) 65, 549, 640
NlaIV GGNNCC 2 cut(s) 49, 399
NmuCI GTSAC 1 cut(s) 270
PagI TCATGA 1 cut(s) 61
PceI AGGCCT 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 4 cut(s) 449, 491, 497, 510
PflFI GACNNNGTC 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 527
PkrI GCNGC 2 cut(s) 14, 437
PpuMI RGGWCCY 1 cut(s) 397
PshAI GACNNNNGTC 1 cut(s) 669
PsiI TTATAA 1 cut(s) 685
Psp124BI GAGCTC 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 2 cut(s) 50, 292
PspGI CCWGG 2 cut(s) 50, 292
PspN4I GGNNCC 2 cut(s) 49, 399
PspPI GGNCC 2 cut(s) 48, 397
PspPPI RGGWCCY 1 cut(s) 397
PstNI CAGNNNCTG 2 cut(s) 76, 500
PsuI RGATCY 1 cut(s) 562
PsyI GACNNNGTC 1 cut(s) 86
SacI GAGCTC 1 cut(s) 234
SalI GTCGAC 1 cut(s) 644
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 2 cut(s) 13, 436
Sau3AI GATC 3 cut(s) 67, 425, 562
Sau96I GGNCC 2 cut(s) 48, 397
ScrFI CCNGG 2 cut(s) 52, 294
SduI GDGCHC 1 cut(s) 234
SetI ASST 8 cut(s) 17, 75, 139, 173, 234, 338, 362, 621
SgrAI CRCCGGYG 1 cut(s) 527
SinI GGWCC 1 cut(s) 397
SmlI CTYRAG 2 cut(s) 337, 361
SmoI CTYRAG 2 cut(s) 337, 361
Sse9I AATT 3 cut(s) 178, 328, 626
SseBI AGGCCT 1 cut(s) 190
SspMI CTAG 1 cut(s) 372
SstI GAGCTC 1 cut(s) 234
StuI AGGCCT 1 cut(s) 190
StyD4I CCNGG 2 cut(s) 50, 292
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 2 cut(s) 101, 369
TaqI TCGA 2 cut(s) 125, 645
TaqII GACCGA 1 cut(s) 659
TasI AATT 3 cut(s) 178, 328, 626
TfiI GAWTC 4 cut(s) 449, 491, 497, 510
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 12, 435
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 7 cut(s) 78, 236, 237, 432, 462, 544, 590
TspRI CASTG 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 86
Vha464I CTTAAG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 1 cut(s) 328
XbaI TCTAGA 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.