RLG00000010378
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017609
Physical Location & Seq
Reverse (-)
1100088 .. 1101250
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010378

Sequence Viewer

Length: 693 bp
ATGGGAAGAAGCAGCTCTCGTTGTGATAAGGAGGGAGCGAACAAAGGAGCCTGGACTGCTCATGAAGATCAGGTTCTGAGAGATTATGTCAAAGAGTACGGTGAAGGGAAATGGGGGAAAATGTCGAGGGAAACAGGTCTGAAGAGATGTGGAAAGAGTTGCAGGCTTAGGTGGTTGAATTATCTGAGGCCTGGTATCAAGAGAGGGAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTTCACAAACTCTTAGGCAACAGATGGTCACTGATAGCTGGAAGGCTTCCAGGGCGAACAGACAATGAGATAAAGAACTATTGGAATTCTACCATAAGGAAGAAACAGGAAAACAGCTCAAGACGGTCTAGAAACGAGAGAAAAACCATCAAGGACCCTTATTTGACCAACAATGAAATCAGACCAACAAGCAGCACCAGAAATGAATTAGCAGAACAACCATTTCTCTCTGGAGTTGAAAGGAATATTAAGGTAGAACCAGATTCTGGTCATGGATTCTTGCAGACCACTGGTGAAAGTGGTATGGCATGGAACTTCATAATGGATCTAAATGCAGGGCAACTTAGCATATCTGAGTTTCTTCATACGGACTTCTCTAAGCTTTGTGAATTGAATACCATGGTCGCCGACTGCACGAATGGTGTCGACATCGGTCATTTAGAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

231

Amino Acids

26.32

Weight (kDa)

8.94

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 8.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 76 1.9e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 111 7.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 119 6.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31060
malus_domestica MD08G1070900.v1.1
prunus_persica Prupe.1G405100_v2.0.a1
pyrus_communis pycom08g05870
rosa_chinensis RchiOBHm_Chr6g0311741
rosa_laevigata RLG00000010378
rosa_multiflora Rmu_sc0002888.1_g000037
rosa_roxburghii Rroxscaffold_7G00157350
rosa_samantha Rh6AG506700 Rh6BG517300 Rh6DG508900
rosa_wichuraiana Rw6G044070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 509
AccI GTMKAC 1 cut(s) 669
AclWI GGATC 1 cut(s) 576
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 509
AgsI TTSAA 3 cut(s) 178, 482, 637
AjnI CCWGG 3 cut(s) 50, 190, 292
AluBI AGCT 5 cut(s) 15, 232, 281, 360, 625
AluI AGCT 5 cut(s) 15, 232, 281, 360, 625
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 1 cut(s) 576
AlwNI CAGNNNCTG 2 cut(s) 76, 509
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 12, 435
ApoI RAATTY 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 113, 548
AvaII GGWCC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 24, 447
BccI CCATC 2 cut(s) 261, 398
BciT130I CCWGG 3 cut(s) 52, 192, 294
BfaI CTAG 1 cut(s) 372
BisI GCNGC 2 cut(s) 13, 436
BlsI GCNGC 2 cut(s) 14, 437
Bme1390I CCNGG 3 cut(s) 52, 192, 294
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 397
BmiI GGNNCC 2 cut(s) 49, 399
BmrFI CCNGG 3 cut(s) 52, 192, 294
BoxI GACNNNNGTC 1 cut(s) 675
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 293, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 538
BseBI CCWGG 3 cut(s) 52, 192, 294
BseDI CCNNGG 2 cut(s) 293, 642
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMII CTCAG 3 cut(s) 68, 176, 588
BseNI ACTGG 1 cut(s) 538
BseXI GCAGC 2 cut(s) 24, 447
BsgI GTGCAG 1 cut(s) 640
BshFI GGCC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 509
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 67, 568
Bsp19I CCATGG 1 cut(s) 642
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 3 cut(s) 69, 177, 589
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 49, 399
BspPI GGATC 1 cut(s) 576
BspQI GCTCTTC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 2 cut(s) 293, 642
BssMI GATC 2 cut(s) 67, 568
BssT1I CCWWGG 1 cut(s) 642
Bst2UI CCWGG 3 cut(s) 52, 192, 294
Bst4CI ACNGT 2 cut(s) 101, 369
Bst6I CTCTTC 2 cut(s) 137, 222
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 7 cut(s) 77, 167, 185, 256, 587, 597, 621
BstDSI CCRYGG 1 cut(s) 642
BstKTI GATC 2 cut(s) 70, 571
BstMBI GATC 2 cut(s) 67, 568
BstMWI GCNNNNNNNGC 2 cut(s) 56, 295
BstNI CCWGG 3 cut(s) 52, 192, 294
BstPAI GACNNNNGTC 1 cut(s) 675
BstSCI CCNGG 3 cut(s) 50, 190, 292
BstV1I GCAGC 2 cut(s) 24, 447
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BsuRI GGCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 642
BtsIMutI CAGTG 2 cut(s) 272, 531
Cac8I GCNNGC 1 cut(s) 164
CaiI CAGNNNCTG 2 cut(s) 76, 509
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 97
CviAII CATG 4 cut(s) 62, 515, 552, 643
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 7 cut(s) 77, 167, 185, 256, 587, 597, 621
DpnI GATC 2 cut(s) 69, 570
DpnII GATC 2 cut(s) 67, 568
Eam1104I CTCTTC 2 cut(s) 137, 222
EarI CTCTTC 2 cut(s) 137, 222
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 642
Eco147I AGGCCT 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 3 cut(s) 50, 190, 292
EcoT14I CCWWGG 1 cut(s) 642
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 642
FaeI CATG 4 cut(s) 65, 518, 555, 646
FatI CATG 4 cut(s) 61, 514, 551, 642
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 2 cut(s) 13, 436
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 13, 436
FspBI CTAG 1 cut(s) 372
GluI GCNGC 2 cut(s) 13, 436
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 1 cut(s) 190
Hin1II CATG 4 cut(s) 65, 518, 555, 646
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 2 cut(s) 506, 519
HphI GGTGA 2 cut(s) 113, 548
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 5 cut(s) 78, 141, 186, 425, 598
Hpy188III TCNNGA 5 cut(s) 62, 199, 363, 372, 474
Hpy8I GTNNAC 1 cut(s) 670
HpyAV CCTTC 2 cut(s) 98, 279
HpyCH4III ACNGT 2 cut(s) 101, 369
HpyCH4V TGCA 4 cut(s) 162, 526, 578, 657
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 295
HpyF3I CTNAG 7 cut(s) 77, 167, 185, 256, 587, 597, 621
Hsp92II CATG 4 cut(s) 65, 518, 555, 646
Kzo9I GATC 2 cut(s) 67, 568
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 35, 47
Lsp1109I GCAGC 2 cut(s) 24, 447
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 270
MalI GATC 2 cut(s) 69, 570
MboI GATC 2 cut(s) 67, 568
MboII GAAGA 8 cut(s) 18, 77, 154, 230, 236, 239, 355, 596
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 4 cut(s) 178, 328, 449, 632
MnlI CCTC 4 cut(s) 25, 120, 180, 197
MseI TTAA 1 cut(s) 492
MspR9I CCNGG 3 cut(s) 52, 192, 294
MvaI CCWGG 3 cut(s) 52, 192, 294
MwoI GCNNNNNNNGC 2 cut(s) 56, 295
NcoI CCATGG 1 cut(s) 642
NdeII GATC 2 cut(s) 67, 568
NlaIII CATG 4 cut(s) 65, 518, 555, 646
NlaIV GGNNCC 2 cut(s) 49, 399
NmuCI GTSAC 1 cut(s) 270
PagI TCATGA 1 cut(s) 61
PceI AGGCCT 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 506, 519
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 2 cut(s) 14, 437
PpuMI RGGWCCY 1 cut(s) 397
PshAI GACNNNNGTC 1 cut(s) 675
Psp124BI GAGCTC 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 3 cut(s) 50, 190, 292
PspGI CCWGG 3 cut(s) 50, 190, 292
PspN4I GGNNCC 2 cut(s) 49, 399
PspPI GGNCC 1 cut(s) 397
PspPPI RGGWCCY 1 cut(s) 397
PstNI CAGNNNCTG 2 cut(s) 76, 509
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SacI GAGCTC 1 cut(s) 234
SalI GTCGAC 1 cut(s) 668
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 2 cut(s) 13, 436
Sau3AI GATC 2 cut(s) 67, 568
Sau96I GGNCC 1 cut(s) 397
ScrFI CCNGG 3 cut(s) 52, 192, 294
SduI GDGCHC 1 cut(s) 234
SetI ASST 9 cut(s) 17, 75, 139, 173, 234, 283, 362, 498, 627
SinI GGWCC 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 361
SmoI CTYRAG 1 cut(s) 361
Sse9I AATT 4 cut(s) 178, 328, 449, 632
SseBI AGGCCT 1 cut(s) 190
SspI AATATT 1 cut(s) 490
SspMI CTAG 1 cut(s) 372
SstI GAGCTC 1 cut(s) 234
StuI AGGCCT 1 cut(s) 190
StyD4I CCNGG 3 cut(s) 50, 190, 292
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 2 cut(s) 101, 369
TaqI TCGA 2 cut(s) 125, 669
TaqII GACCGA 1 cut(s) 665
TasI AATT 4 cut(s) 178, 328, 449, 632
TfiI GAWTC 2 cut(s) 506, 519
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 2 cut(s) 279, 538
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 2 cut(s) 12, 435
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 6 cut(s) 78, 237, 432, 462, 550, 596
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 2 cut(s) 279, 538
Van91I CCANNNNNTGG 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 1 cut(s) 328
XbaI TCTAGA 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 669
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.