MD08G1070900.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0017609
Physical Location & Seq
Forward (+)
5622406 .. 5623343
938 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1070900.v1.1.491

Sequence Viewer

Length: 771 bp
ATGGGAAGAAGCTCCCGTTGTGAGAAGGATGGACTGCGCAGAGGAGCTTGGACTGATGCTGAAGACCAAATTCTGCTCGATTATGTCAGAGAGCACGGCGAAGGGAGATGGGAGAAACTATCGAGGGAAGCAGGTCTGAAGAGATGTGGGAAGAGTTGTAGGCTTAGGTGGTTGAATTATCTGAGGCCTGATATCAAGAGAGGCAACATTACACAAGAAGAAGAAGACCTGATCATCAGACTCCACAAACTATTAGGCAACAGATGGTCATTGATAGCTGGAAGGCTTCCAGGTCGTACAGACAATGAGATCAAGAACTACTGGAACTCTATCTTAAGGAAGAACGCACAAGAAAACCAATCAGAAAGGTCTAGAAATAAGAGGAAAACCACCGAAGACTTGGCTGCAGAGGCTGCGTCATCAGTAGAGACCGATTCGCATTTTTCCAAAGAAGAAGTCAGACCAACAAACAATGGAATTGAAGAAAAGAATACAGAAGCAGAATCAGATTGCCATAATGGATTCTTACGTAAAACTAGTGACAGTGATATGCCGCGGAACTTCATAACGGATCTCAATGAAGGGCAACTTAGCATATCTGAGTTTCTCCATACCGACTTTACAAAGCTTTGTGAACTGAATATGAAGATTGTTGATTGCATGAATAGCTGTAGAAATGGGTCATTAATGTCAACCCCAACCACCGAAGCTCCTTTGCATTTGGAGGAGTTGCTAAATGATTGGGAAGCTTACGACTTTTATCTGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

257

Amino Acids

29.66

Weight (kDa)

5.67

Isoelectric Point (pI)

63.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.9e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 2.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 120 3.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31060
malus_domestica MD08G1070900.v1.1
prunus_persica Prupe.1G405100_v2.0.a1
pyrus_communis pycom08g05870
rosa_chinensis RchiOBHm_Chr6g0311741
rosa_laevigata RLG00000010378
rosa_multiflora Rmu_sc0002888.1_g000037
rosa_roxburghii Rroxscaffold_7G00157350
rosa_samantha Rh6AG506700 Rh6BG517300 Rh6DG508900
rosa_wichuraiana Rw6G044070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 122
AccII CGCG 1 cut(s) 556
AciI CCGC 2 cut(s) 554, 556
AclWI GGATC 1 cut(s) 579
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 2 cut(s) 81, 158
AfaI GTAC 1 cut(s) 298
AflII CTTAAG 1 cut(s) 334
AgsI TTSAA 2 cut(s) 175, 482
AhlI ACTAGT 1 cut(s) 536
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 12, 47, 278, 628, 669, 710, 749
AluI AGCT 7 cut(s) 12, 47, 278, 628, 669, 710, 749
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 579
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 404, 413
ApoI RAATTY 1 cut(s) 69
ArsI GACNNNNNNTTYG 2 cut(s) 441, 473
AseI ATTAAT 1 cut(s) 686
AspLEI GCGC 1 cut(s) 39
BbsI GAAGAC 3 cut(s) 69, 231, 402
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 391, 400
BccI CCATC 3 cut(s) 23, 102, 258
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 422
BcuI ACTAGT 1 cut(s) 536
BfaI CTAG 2 cut(s) 372, 537
BfmI CTRYAG 2 cut(s) 405, 670
BfrI CTTAAG 1 cut(s) 334
BfuAI ACCTGC 1 cut(s) 122
BisI GCNGC 3 cut(s) 405, 414, 554
BlsI GCNGC 3 cut(s) 406, 415, 555
Bme1390I CCNGG 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 3 cut(s) 69, 231, 402
Bpu10I CCTNAGC 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 530
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bse1I ACTGG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 173, 591
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 57, 740
BseXI GCAGC 2 cut(s) 391, 400
Bsh1236I CGCG 1 cut(s) 556
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 422
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 231, 309, 571
BspACI CCGC 2 cut(s) 554, 556
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 174, 592
BspFNI CGCG 1 cut(s) 556
BspMAI CTGCAG 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 1 cut(s) 579
BspTI CTTAAG 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 422
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 3 cut(s) 231, 309, 571
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 2 cut(s) 134, 146
BstAFI CTTAAG 1 cut(s) 334
BstAPI GCANNNNNTGC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 530
BstDEI CTNAG 4 cut(s) 164, 182, 590, 600
BstDSI CCRYGG 1 cut(s) 554
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 556
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 3 cut(s) 234, 312, 574
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 3 cut(s) 231, 309, 571
BstMWI GCNNNNNNNGC 3 cut(s) 410, 413, 666
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 405, 670
BstSNI TACGTA 1 cut(s) 530
BstUI CGCG 1 cut(s) 556
BstV1I GCAGC 2 cut(s) 391, 400
BstV2I GAAGAC 3 cut(s) 69, 231, 402
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 550
BveI ACCTGC 1 cut(s) 122
CaiI CAGNNNCTG 1 cut(s) 413
CfoI GCGC 1 cut(s) 39
Cfr42I CCGCGG 1 cut(s) 557
CseI GACGC 1 cut(s) 405
Csp6I GTAC 1 cut(s) 297
CviAII CATG 1 cut(s) 661
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 4 cut(s) 164, 182, 590, 600
DpnI GATC 3 cut(s) 233, 311, 573
DpnII GATC 3 cut(s) 231, 309, 571
Eam1104I CTCTTC 2 cut(s) 134, 146
EarI CTCTTC 2 cut(s) 134, 146
Eco105I TACGTA 1 cut(s) 530
Eco147I AGGCCT 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 422
Eco32I GATATC 1 cut(s) 193
Eco57I CTGAAG 2 cut(s) 81, 158
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 1 cut(s) 193
FaeI CATG 1 cut(s) 664
FaiI YATR 8 cut(s) 84, 516, 551, 566, 596, 612, 644, 662
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FatI CATG 1 cut(s) 660
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 405, 414, 554
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 3 cut(s) 405, 414, 554
FspBI CTAG 2 cut(s) 372, 537
FspI TGCGCA 1 cut(s) 38
GlaI GCGC 1 cut(s) 38
GluI GCNGC 3 cut(s) 405, 414, 554
HaeIII GGCC 1 cut(s) 187
HgaI GACGC 1 cut(s) 405
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 664
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HindIII AAGCTT 2 cut(s) 626, 747
HinfI GANTC 4 cut(s) 240, 434, 503, 522
Hpy166II GTNNAC 2 cut(s) 635, 693
Hpy188I TCNGA 8 cut(s) 89, 138, 183, 239, 364, 461, 508, 601
Hpy188III TCNNGA 3 cut(s) 196, 313, 372
Hpy8I GTNNAC 2 cut(s) 635, 693
HpyAV CCTTC 4 cut(s) 19, 95, 276, 575
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 3 cut(s) 407, 660, 718
HpyF10VI GCNNNNNNNGC 3 cut(s) 410, 413, 666
HpyF3I CTNAG 4 cut(s) 164, 182, 590, 600
HpySE526I ACGT 1 cut(s) 529
Hsp92II CATG 1 cut(s) 664
HspAI GCGC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 231
KspI CCGCGG 1 cut(s) 557
Kzo9I GATC 3 cut(s) 231, 309, 571
LmnI GCTCC 3 cut(s) 17, 44, 715
LpnPI CCDG 7 cut(s) 117, 201, 242, 264, 276, 303, 307
Lsp1109I GCAGC 2 cut(s) 391, 400
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 372, 537
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 1 cut(s) 539
MalI GATC 3 cut(s) 233, 311, 573
MboI GATC 3 cut(s) 231, 309, 571
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 3 cut(s) 69, 175, 477
MlyI GAGTC 1 cut(s) 234
MnlI CCTC 7 cut(s) 35, 117, 177, 194, 375, 403, 718
MseI TTAA 2 cut(s) 335, 686
MspA1I CMGCKG 1 cut(s) 556
MspCI CTTAAG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 556
MwoI GCNNNNNNNGC 3 cut(s) 410, 413, 666
NdeII GATC 3 cut(s) 231, 309, 571
NlaIII CATG 1 cut(s) 664
NmuCI GTSAC 1 cut(s) 539
NsbI TGCGCA 1 cut(s) 38
PceI AGGCCT 1 cut(s) 187
PfeI GAWTC 3 cut(s) 434, 503, 522
PkrI GCNGC 3 cut(s) 406, 415, 555
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Ppu21I YACGTR 1 cut(s) 530
PshBI ATTAAT 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PstI CTGCAG 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SacII CCGCGG 1 cut(s) 557
SaqAI TTAA 2 cut(s) 335, 686
SatI GCNGC 3 cut(s) 405, 414, 554
Sau3AI GATC 3 cut(s) 231, 309, 571
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 2 cut(s) 405, 670
Sfr303I CCGCGG 1 cut(s) 557
SgrBI CCGCGG 1 cut(s) 557
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SnaBI TACGTA 1 cut(s) 530
SpeI ACTAGT 1 cut(s) 536
Sse9I AATT 3 cut(s) 69, 175, 477
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 2 cut(s) 554, 556
SspMI CTAG 2 cut(s) 372, 537
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 545
TaiI ACGT 1 cut(s) 532
TaqI TCGA 2 cut(s) 78, 122
TaqII GACCGA 1 cut(s) 446
TasI AATT 3 cut(s) 69, 175, 477
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 3 cut(s) 434, 503, 522
Tru1I TTAA 2 cut(s) 335, 686
Tru9I TTAA 2 cut(s) 335, 686
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 2 cut(s) 404, 413
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 4 cut(s) 553, 594, 659, 677
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 1 cut(s) 550
Vha464I CTTAAG 1 cut(s) 334
VspI ATTAAT 1 cut(s) 686
XapI RAATTY 1 cut(s) 69
XbaI TCTAGA 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XspI CTAG 2 cut(s) 372, 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.