Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017613

Physical Location & Seq

Genomic Coordinates Reverse (-)

64543353 .. 64546580

Gene Structure 3228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG422600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCATCCCTGAGTTCGTCGCGGAATTCCAACTCCTCCTGGACGCCGAAGCAGAACAAGCGGTTCGAGAAGGCCCTGGCTGTGTACGACAAGGACACGCAGGACCGGTGGCACAATGTGGCCAAGGCTGTGGGTGGAAAATCAGCTGAGGAAGTCAAGAGGCACTATGAGATTCTGGTGCAGGATCTCATGCATATAGAATCTGGTCAAGTCGCTATACCCAATTACAGGGCCACTGGAAGCAGCTCTAGAGGAATTGCTGATTATGAACAGAGAAACTCTAATCAAATATCAGAAAAGATGGCAAAGACCTCGTTCGTGTTCATTTTCGCATTGGTGCTGATCATATCGGTTCACATTCATTCGGTGTTTGGTGATGAAGACAAAGACATGATTGACAAAGCAAGCGACGCTGCGGGAAAGGCAAAGAATGCAGCGGAGAATTTTGGACACAAGGCTTCCAATGCCGCCCAAGAAGCTAGGGAAACCGGTTCATCATGGGCTGATTGGTTTAAAGGCAAATTCTCAGATATGGGCGGAGACGATGATGCAGATTCACCTTCCGGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

190

Amino Acids

20.85

Weight (kDa)

6.07

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 56	3.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39670
malus_domestica	MD08G1030600.v1.1 MD15G1025800.v1.1
rosa_chinensis	RchiOBHm_Chr6g0301201
rosa_roxburghii	Rroxscaffold_171G00441340 Rroxscaffold_7G00167000 Rroxscaffold_7G00167050
rosa_rugosa	Rorug06G0302400
rosa_samantha	Rh6AG415700 Rh6BG422600 Rh6CG430200 Rh6DG415600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	563
AciI	CCGC	6 cut(s)	22, 61, 416, 437, 468, 537
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	3 cut(s)	25, 442, 521
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgeI	ACCGGT	2 cut(s)	105, 488
AjnI	CCWGG	2 cut(s)	38, 75
AluBI	AGCT	3 cut(s)	146, 246, 479
AluI	AGCT	3 cut(s)	146, 246, 479
Alw26I	GTCTC	1 cut(s)	534
AlwI	GGATC	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	563
AoxI	GGCC	3 cut(s)	72, 120, 231
ApeKI	GCWGC	3 cut(s)	243, 413, 434
ApoI	RAATTY	3 cut(s)	25, 442, 521
AsiGI	ACCGGT	2 cut(s)	105, 488
AspS9I	GGNCC	3 cut(s)	73, 103, 231
AsuHPI	GGTGA	2 cut(s)	386, 549
AvaII	GGWCC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	387
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	255, 400, 446
BccI	CCATC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	2 cut(s)	40, 77
BclI	TGATCA	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	2 cut(s)	249, 480
BisI	GCNGC	4 cut(s)	244, 414, 435, 468
BlsI	GCNGC	4 cut(s)	245, 415, 436, 469
Bme1390I	CCNGG	2 cut(s)	40, 77
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	3 cut(s)	73, 103, 231
BmrFI	CCNGG	2 cut(s)	40, 77
BmsI	GCATC	2 cut(s)	14, 538
BpiI	GAAGAC	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	75, 123
BsaWI	WCCGGW	3 cut(s)	105, 488, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	2 cut(s)	105, 488
Bse1I	ACTGG	1 cut(s)	241
BseAI	TCCGGA	1 cut(s)	563
BseBI	CCWGG	2 cut(s)	40, 77
BseDI	CCNNGG	2 cut(s)	75, 123
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	138, 540
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	255, 400, 446
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	3 cut(s)	74, 122, 233
BshTI	ACCGGT	2 cut(s)	105, 488
BsiSI	CCGG	3 cut(s)	106, 489, 564
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	534
BsmBI	CGTCTC	1 cut(s)	534
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	3 cut(s)	74, 122, 233
Bsp13I	TCCGGA	1 cut(s)	563
Bsp143I	GATC	2 cut(s)	184, 342
BspACI	CCGC	6 cut(s)	22, 61, 416, 437, 468, 537
BspANI	GGCC	3 cut(s)	74, 122, 233
BspCNI	CTCAG	2 cut(s)	139, 539
BspEI	TCCGGA	1 cut(s)	563
BspFNI	CGCG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	192
BsrFI	RCCGGY	2 cut(s)	105, 488
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	2 cut(s)	105, 488
BssECI	CCNNGG	2 cut(s)	75, 123
BssMI	GATC	2 cut(s)	184, 342
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	40, 77
BstACI	GRCGYC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	11, 147, 526
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	2 cut(s)	187, 345
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	2 cut(s)	184, 342
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 410, 422, 431, 464, 476
BstNI	CCWGG	2 cut(s)	40, 77
BstSCI	CCNGG	2 cut(s)	38, 75
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	255, 400, 446
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	74, 122, 233
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	406
Cfr10I	RCCGGY	2 cut(s)	105, 488
Cfr13I	GGNCC	3 cut(s)	73, 103, 231
CseI	GACGC	2 cut(s)	52, 419
Csp6I	GTAC	1 cut(s)	85
CspAI	ACCGGT	2 cut(s)	105, 488
CviAII	CATG	3 cut(s)	190, 391, 498
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	11, 147, 526
DpnI	GATC	2 cut(s)	186, 344
DpnII	GATC	2 cut(s)	184, 342
DraI	TTTAAA	1 cut(s)	514
DraIII	CACNNNGTG	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	38, 75
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	534
FaeI	CATG	3 cut(s)	193, 394, 501
FatI	CATG	3 cut(s)	189, 390, 497
FauI	CCCGC	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	244, 414, 435, 468
Fsp4HI	GCNGC	4 cut(s)	244, 414, 435, 468
FspBI	CTAG	2 cut(s)	249, 480
GluI	GCNGC	4 cut(s)	244, 414, 435, 468
HaeIII	GGCC	3 cut(s)	74, 122, 233
HapII	CCGG	3 cut(s)	106, 489, 564
HgaI	GACGC	2 cut(s)	52, 419
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	193, 394, 501
HinfI	GANTC	3 cut(s)	172, 200, 554
HpaII	CCGG	3 cut(s)	106, 489, 564
HphI	GGTGA	2 cut(s)	386, 549
Hpy166II	GTNNAC	2 cut(s)	85, 355
Hpy188I	TCNGA	2 cut(s)	295, 529
Hpy188III	TCNNGA	4 cut(s)	67, 157, 249, 564
Hpy8I	GTNNAC	2 cut(s)	85, 355
Hpy99I	CGWCG	2 cut(s)	22, 413
HpyAV	CCTTC	2 cut(s)	64, 570
HpyCH4V	TGCA	4 cut(s)	181, 193, 434, 551
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 410, 422, 431, 464, 476
HpyF3I	CTNAG	3 cut(s)	11, 147, 526
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	193, 394, 501
Kpn2I	TCCGGA	1 cut(s)	563
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	184, 342
Lsp1109I	GCAGC	3 cut(s)	255, 400, 446
LweI	GCATC	2 cut(s)	14, 538
MaeI	CTAG	2 cut(s)	249, 480
MalI	GATC	2 cut(s)	186, 344
MboI	GATC	2 cut(s)	184, 342
MboII	GAAGA	1 cut(s)	392
MflI	RGATCY	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	5 cut(s)	25, 223, 255, 442, 521
MluNI	TGGCCA	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	46, 142, 153, 245, 322
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	195
MroI	TCCGGA	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	513
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	146, 437
MspI	CCGG	3 cut(s)	106, 489, 564
MspR9I	CCNGG	2 cut(s)	40, 77
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	2 cut(s)	40, 77
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	6 cut(s)	58, 410, 422, 431, 464, 476
NdeII	GATC	2 cut(s)	184, 342
NlaIII	CATG	3 cut(s)	193, 394, 501
NsiI	ATGCAT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	3 cut(s)	172, 200, 554
PfoI	TCCNGGA	1 cut(s)	38
PinAI	ACCGGT	2 cut(s)	105, 488
PkrI	GCNGC	4 cut(s)	245, 415, 436, 469
Psp6I	CCWGG	2 cut(s)	38, 75
PspGI	CCWGG	2 cut(s)	38, 75
PspPI	GGNCC	3 cut(s)	73, 103, 231
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	4 cut(s)	244, 414, 435, 468
Sau3AI	GATC	2 cut(s)	184, 342
Sau96I	GGNCC	3 cut(s)	73, 103, 231
ScrFI	CCNGG	2 cut(s)	40, 77
SetI	ASST	5 cut(s)	148, 248, 314, 481, 562
SfaNI	GCATC	2 cut(s)	14, 538
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	5 cut(s)	25, 223, 255, 442, 521
SsiI	CCGC	6 cut(s)	22, 61, 416, 437, 468, 537
SspMI	CTAG	2 cut(s)	249, 480
StyD4I	CCNGG	2 cut(s)	38, 75
StyI	CCWWGG	1 cut(s)	123
TaqI	TCGA	1 cut(s)	66
TasI	AATT	5 cut(s)	25, 223, 255, 442, 521
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	3 cut(s)	172, 200, 554
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	3 cut(s)	243, 413, 434
TspDTI	ATGAA	5 cut(s)	282, 313, 350, 393, 483
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	3 cut(s)	25, 442, 521
XbaI	TCTAGA	1 cut(s)	248
XspI	CTAG	2 cut(s)	249, 480
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.