MD08G1030600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0017613
Physical Location & Seq
Forward (+)
2191258 .. 2191957
700 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1030600.v1.1.491

Sequence Viewer

Length: 294 bp
ATGGCAAAGATTGCGTTCGTGTTGATTTTCACATTGATGTTGCTTATGTCGATCCAGGCGGTGTTGGGTGACGACGATTTCCTGGAAACTGCAAAGGATCACATAAACACCGCTGCCACGGCCGCCAAAGATGCGGCTGATAGCGTGTCCAAATCGGATGCCTTTAAGGAAGCGAAGGAGACGGCATCAACATGGGGTGATTGGTTTACGGACAAATTCCATGATATGGGTTTCAGCTCGGACGACGATGATGACGACCATGACAGCAGCTCAAAGGCACCGAAATCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.58

Weight (kDa)

4.31

Isoelectric Point (pI)

25.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 277
AccB7I CCANNNNNTGG 1 cut(s) 226
AciI CCGC 4 cut(s) 59, 111, 123, 134
AclWI GGATC 2 cut(s) 46, 105
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 226
AjnI CCWGG 2 cut(s) 54, 81
AluBI AGCT 2 cut(s) 237, 270
AluI AGCT 2 cut(s) 237, 270
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 2 cut(s) 46, 105
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 113, 267
ApoI RAATTY 1 cut(s) 215
AsuHPI GGTGA 2 cut(s) 80, 209
BanI GGYRCC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 100, 279
BceAI ACGGC 2 cut(s) 135, 198
BciT130I CCWGG 2 cut(s) 56, 83
BcoDI GTCTC 1 cut(s) 173
BisI GCNGC 4 cut(s) 114, 123, 135, 268
BlsI GCNGC 4 cut(s) 115, 124, 136, 269
Bme1390I CCNGG 2 cut(s) 56, 83
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 2 cut(s) 56, 83
BmsI GCATC 3 cut(s) 121, 148, 194
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 226
BseBI CCWGG 2 cut(s) 56, 83
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 226
BseX3I CGGCCG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 100, 279
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 51, 97
BspACI CCGC 4 cut(s) 59, 111, 123, 134
BspANI GGCC 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 279
BspPI GGATC 2 cut(s) 46, 105
BspT107I GGYRCC 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 51, 97
Bst2UI CCWGG 2 cut(s) 56, 83
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 2 cut(s) 54, 100
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 51, 97
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 4 cut(s) 11, 119, 122, 131
BstNI CCWGG 2 cut(s) 56, 83
BstSCI CCNGG 2 cut(s) 54, 81
BstV1I GCAGC 2 cut(s) 100, 279
BstZI CGGCCG 1 cut(s) 120
BsuRI GGCC 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 163
CviAII CATG 3 cut(s) 192, 221, 260
CviJI RGCY 4 cut(s) 122, 137, 237, 270
CviKI_1 RGCY 4 cut(s) 122, 137, 237, 270
DpnI GATC 2 cut(s) 53, 99
DpnII GATC 2 cut(s) 51, 97
EaeI YGGCCR 1 cut(s) 120
EagI CGGCCG 1 cut(s) 120
EclXI CGGCCG 1 cut(s) 120
Eco52I CGGCCG 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 54, 81
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 3 cut(s) 195, 224, 263
FaiI YATR 6 cut(s) 47, 104, 193, 222, 227, 261
FatI CATG 3 cut(s) 191, 220, 259
Fnu4HI GCNGC 4 cut(s) 114, 123, 135, 268
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 4 cut(s) 114, 123, 135, 268
GluI GCNGC 4 cut(s) 114, 123, 135, 268
HaeIII GGCC 1 cut(s) 122
Hin1II CATG 3 cut(s) 195, 224, 263
HphI GGTGA 2 cut(s) 80, 209
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 3 cut(s) 157, 241, 289
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 2 cut(s) 77, 248
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 119, 122, 131
Hsp92II CATG 3 cut(s) 195, 224, 263
Kzo9I GATC 2 cut(s) 51, 97
LpnPI CCDG 4 cut(s) 41, 68, 68, 95
Lsp1109I GCAGC 2 cut(s) 100, 279
LweI GCATC 3 cut(s) 121, 148, 194
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 53, 99
MboI GATC 2 cut(s) 51, 97
MluCI AATT 1 cut(s) 215
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 2 cut(s) 35, 190
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 2 cut(s) 56, 83
MvaI CCWGG 2 cut(s) 56, 83
MwoI GCNNNNNNNGC 4 cut(s) 11, 119, 122, 131
NdeII GATC 2 cut(s) 51, 97
NlaIII CATG 3 cut(s) 195, 224, 263
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PflMI CCANNNNNTGG 1 cut(s) 226
PfoI TCCNGGA 1 cut(s) 81
PkrI GCNGC 4 cut(s) 115, 124, 136, 269
Psp6I CCWGG 2 cut(s) 54, 81
PspGI CCWGG 2 cut(s) 54, 81
PspN4I GGNNCC 1 cut(s) 279
RseI CAYNNNNRTG 2 cut(s) 35, 190
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 4 cut(s) 114, 123, 135, 268
Sau3AI GATC 2 cut(s) 51, 97
ScrFI CCNGG 2 cut(s) 56, 83
SetI ASST 2 cut(s) 239, 272
SfaNI GCATC 3 cut(s) 121, 148, 194
SmiMI CAYNNNNRTG 2 cut(s) 35, 190
Sse9I AATT 1 cut(s) 215
SsiI CCGC 4 cut(s) 59, 111, 123, 134
StyD4I CCNGG 2 cut(s) 54, 81
TaqI TCGA 1 cut(s) 50
TasI AATT 1 cut(s) 215
TauI GCSGC 2 cut(s) 125, 137
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 2 cut(s) 113, 267
Tsp45I GTSAC 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 226
XapI RAATTY 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.