FvH4_2g39670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017613
Physical Location & Seq
Forward (+)
28429256 .. 28429668
413 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39670.t1

Sequence Viewer

Length: 294 bp
ATGGCAAAGACCTCGTTTGTGTGCATCTTCGCATTGGTGCTGATTATATCAGTTCACATCCACACCGTGTTTGGTCATGATCAAGACAATAAAGACATGATGGATAAAGCCGGCGACGCTGCTTCATCGGCAAAGCATGCAGCGGAGGACTTGGGACACAAGGCTTCCAATGTCGCGCAGAACGCTAAGGACACCGGCTCGTCATGGGCTGATTGGTTTAAAGGCAAATTCTCATTCGACGCAAGCGTGGGAGATGATGACCACGATCATGCAAAGGGACCTTCCAAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.39

Weight (kDa)

5.89

Isoelectric Point (pI)

20.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 176
AciI CCGC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 119, 140
ApoI RAATTY 1 cut(s) 227
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 278
AvaII GGWCC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 106, 152
BccI CCATC 1 cut(s) 94
BcgI CGANNNNNNTGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 79
BisI GCNGC 2 cut(s) 120, 141
BlsI GCNGC 2 cut(s) 121, 142
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 186
Bse118I RCCGGY 2 cut(s) 110, 194
BseGI GGATG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 106, 152
Bsh1236I CGCG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 111, 195
BslFI GGGAC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 79, 265
BspACI CCGC 1 cut(s) 143
BspFNI CGCG 1 cut(s) 176
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 279
BsrFI RCCGGY 2 cut(s) 110, 194
BssAI RCCGGY 2 cut(s) 110, 194
BssMI GATC 2 cut(s) 79, 265
Bst4CI ACNGT 1 cut(s) 67
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 3 cut(s) 112, 138, 244
BstDEI CTNAG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 2 cut(s) 82, 268
BstMBI GATC 2 cut(s) 79, 265
BstMWI GCNNNNNNNGC 4 cut(s) 116, 128, 137, 182
BstNSI RCATGY 1 cut(s) 140
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 106, 152
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 3 cut(s) 112, 138, 244
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 2 cut(s) 110, 194
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 2 cut(s) 125, 248
CviAII CATG 5 cut(s) 77, 97, 137, 204, 269
CviJI RGCY 4 cut(s) 110, 164, 198, 209
CviKI_1 RGCY 4 cut(s) 110, 164, 198, 209
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 81, 267
DpnII GATC 2 cut(s) 79, 265
DraI TTTAAA 1 cut(s) 220
DraIII CACNNNGTG 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 278
FaeI CATG 5 cut(s) 80, 100, 140, 207, 272
FaiI YATR 6 cut(s) 47, 78, 98, 138, 205, 270
FaqI GGGAC 1 cut(s) 168
FatI CATG 5 cut(s) 76, 96, 136, 203, 268
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 120, 141
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 2 cut(s) 120, 141
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 120, 141
HapII CCGG 2 cut(s) 111, 195
HgaI GACGC 2 cut(s) 125, 248
HhaI GCGC 1 cut(s) 178
Hin1II CATG 5 cut(s) 80, 100, 140, 207, 272
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HpaII CCGG 2 cut(s) 111, 195
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 2 cut(s) 77, 83
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 2 cut(s) 119, 242
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 24, 140, 272
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 128, 137, 182
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 5 cut(s) 80, 100, 140, 207, 272
HspAI GCGC 1 cut(s) 176
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 79, 265
LpnPI CCDG 2 cut(s) 124, 208
Lsp1109I GCAGC 2 cut(s) 106, 152
LweI GCATC 1 cut(s) 33
MalI GATC 2 cut(s) 81, 267
MboI GATC 2 cut(s) 79, 265
MboII GAAGA 1 cut(s) 19
MluCI AATT 1 cut(s) 227
MnlI CCTC 2 cut(s) 22, 139
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 2 cut(s) 219, 292
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 111, 195
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 4 cut(s) 116, 128, 137, 182
NaeI GCCGGC 1 cut(s) 112
NdeII GATC 2 cut(s) 79, 265
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 5 cut(s) 80, 100, 140, 207, 272
NlaIV GGNNCC 1 cut(s) 279
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PagI TCATGA 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 121, 142
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 2 cut(s) 219, 292
SatI GCNGC 2 cut(s) 120, 141
Sau3AI GATC 2 cut(s) 79, 265
Sau96I GGNCC 1 cut(s) 278
SetI ASST 3 cut(s) 14, 283, 292
SfaNI GCATC 1 cut(s) 33
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 267
SphI GCATGC 1 cut(s) 140
Sse9I AATT 1 cut(s) 227
SsiI CCGC 1 cut(s) 143
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 227
Tru1I TTAA 2 cut(s) 219, 292
Tru9I TTAA 2 cut(s) 219, 292
TseI GCWGC 2 cut(s) 119, 140
TspDTI ATGAA 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 227
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.