Rorug06G0302400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
45371522 .. 45372098
577 bp
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UTR
Exon/CDS
Intron
Rorug06G0302400.1

Sequence Viewer

Length: 180 bp
ATGGCGAATTATGAGCTCTCAAAATTGTTTAGATTTTTTTCACTTAGAGTTCTTTCTGTCCAGTTCAGAGTTCTTGTGTTCTTTCAGTTTCTGGGTTTTCTTTGTTCTTTAGAACTCTTACACAATCATAGAGATGAAGCAGACGCAGCACCATCCGTTGCAGAATGCAGTAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.81

Weight (kDa)

6.7

Isoelectric Point (pI)

26.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 18
AlwNI CAGNNNCTG 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 158
BccI CCATC 1 cut(s) 160
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 18
BsrI ACTGG 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 158
BtsCI GGATG 1 cut(s) 152
CaiI CAGNNNCTG 1 cut(s) 91
CseI GACGC 1 cut(s) 152
CviJI RGCY 2 cut(s) 16, 176
CviKI_1 RGCY 2 cut(s) 16, 176
DdeI CTNAG 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 18
FaiI YATR 2 cut(s) 12, 129
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 147
FspEI CC 6 cut(s) 74, 77, 78, 158, 165, 169
GluI GCNGC 1 cut(s) 147
HgaI GACGC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 161, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 44
LpnPI CCDG 2 cut(s) 74, 77
Lsp1109I GCAGC 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 2 cut(s) 7, 23
MslI CAYNNNNRTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 146
PctI GAATGC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 132
SacI GAGCTC 1 cut(s) 18
SatI GCNGC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 18
SetI ASST 1 cut(s) 18
SgeI CNNG 3 cut(s) 73, 86, 104
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 2 cut(s) 7, 23
SstI GAGCTC 1 cut(s) 18
TasI AATT 2 cut(s) 7, 23
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 150
TspGWI ACGGA 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.