Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0017613

Physical Location & Seq

Genomic Coordinates Forward (+)

1501306 .. 1501894

Gene Structure 589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1025800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCAAAGATCGCGTTCGTGTTGATTCTCTCACTGGTGTTGCTTATTTCAGTCCATGCGGTGTTGGGTGATGACAATTTCATGGAAACTGCCAAGGGTGCGGCCGAGAGCATGTCTGAATCTGCTTCGGATGCCTTGAAGGAAGCAAAGGAGACAACATCAACATGGGGTGATTGGTTTAAGGACAAATTCCATGATGTGGGTTTGGGATCGGACGACCATGATCACAGCTCAAAGACACCGGAATCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.03

Weight (kDa)

4.65

Isoelectric Point (pI)

19.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39670
malus_domestica	MD08G1030600.v1.1 MD15G1025800.v1.1
rosa_chinensis	RchiOBHm_Chr6g0301201
rosa_roxburghii	Rroxscaffold_171G00441340 Rroxscaffold_7G00167000 Rroxscaffold_7G00167050
rosa_rugosa	Rorug06G0302400
rosa_samantha	Rh6AG415700 Rh6BG422600 Rh6CG430200 Rh6DG415600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	59, 101
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	199, 248
AgsI	TTSAA	1 cut(s)	139
AluBI	AGCT	1 cut(s)	231
AluI	AGCT	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	80, 182
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 248
Bse1I	ACTGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	199, 248
BseNI	ACTGG	1 cut(s)	39
BseX3I	CGGCCG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	199, 248
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	9, 209, 223
BspACI	CCGC	2 cut(s)	59, 101
BspANI	GGCC	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	3 cut(s)	9, 209, 223
BssT1I	CCWWGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	3 cut(s)	12, 212, 226
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	3 cut(s)	9, 209, 223
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 98, 131
BstNSI	RCATGY	1 cut(s)	115
BstUI	CGCG	1 cut(s)	14
BstZI	CGGCCG	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	32
CviAII	CATG	6 cut(s)	56, 82, 112, 165, 194, 221
CviJI	RGCY	2 cut(s)	104, 231
CviKI_1	RGCY	2 cut(s)	104, 231
DpnI	GATC	3 cut(s)	11, 211, 225
DpnII	GATC	3 cut(s)	9, 209, 223
EaeI	YGGCCR	1 cut(s)	102
EagI	CGGCCG	1 cut(s)	102
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	93
Eco52I	CGGCCG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	6 cut(s)	59, 85, 115, 168, 197, 224
FaiI	YATR	6 cut(s)	57, 83, 113, 166, 195, 222
FatI	CATG	6 cut(s)	55, 81, 111, 164, 193, 220
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	6 cut(s)	59, 85, 115, 168, 197, 224
HinfI	GANTC	3 cut(s)	25, 119, 245
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	80, 182
Hpy188I	TCNGA	3 cut(s)	118, 130, 214
HpyAV	CCTTC	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 98, 131
Hsp92II	CATG	6 cut(s)	59, 85, 115, 168, 197, 224
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	9, 209, 223
LpnPI	CCDG	2 cut(s)	20, 234
LweI	GCATC	1 cut(s)	121
MalI	GATC	3 cut(s)	11, 211, 225
MboI	GATC	3 cut(s)	9, 209, 223
MluCI	AATT	2 cut(s)	76, 188
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	163
MspI	CCGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	11, 98, 131
NdeII	GATC	3 cut(s)	9, 209, 223
NlaIII	CATG	6 cut(s)	59, 85, 115, 168, 197, 224
NmeAIII	GCCGAG	1 cut(s)	130
NspI	RCATGY	1 cut(s)	115
PfeI	GAWTC	3 cut(s)	25, 119, 245
PflMI	CCANNNNNTGG	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	3 cut(s)	9, 209, 223
SetI	ASST	1 cut(s)	233
SfaNI	GCATC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	76, 188
SsiI	CCGC	2 cut(s)	59, 101
StyI	CCWWGG	1 cut(s)	93
TasI	AATT	2 cut(s)	76, 188
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	3 cut(s)	25, 119, 245
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	39
TspDTI	ATGAA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	199
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.