Rorug01G0169600
MYB Family

ubiquitin modification-dependent histone binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018070
Physical Location & Seq
Reverse (-)
23098042 .. 23099328
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0169600.1

Sequence Viewer

Length: 1287 bp
ATGCCACCACAAATGGGTAAGTTGAAAGATCTCCAGATGCTACCCGAGTTTGTGCTAGACAAACACAATGCTGGGGAGAATTTGGCAGAGTTAAAGAAGCTTGAAAAATTGCGCGGAACTCTTTGTATCTCAGGGCTTGTGCCCAGCAGTGGTTTGGAGGCCTACATACTGAGGGACAAGAAGTTTCTTAAGGAATTGGTTTTGATTTGGAGAGGAAGGGATTCAAGTGAAGAAGGCAATAATACTGTAGAAGAAAGAGAAGTGCTTGAGAAGCTTCAACCTCACATGAACCTGGAAAGGCTTACAATTGTAGGTTATGGAGGCAAAATGTTTGCAGGTTGGTCAGAATATTATTCTTCCTCTGCTCTTGTTTATCTTAAACTTGCTAATTGTGAGAATTGTATCTCCTTGCCACCATTGGGACAGCTACCTTCCCTCACAGAGCTTGATATTTCTGGGTTTCATGGAGTGGTGTCCATAGGTTCCGAATTCTTTTGTGGTGAGGGCAATACTGCTACTTGTGTGAATAAACCATTTAGATATCTACGGGTTTTAATGTTCTGCAATATGAGTGGGTGGCAAGAATGGTCTTATGTTGGAGGTGAAAATAATGGGGGTGGGATTTTTCCTAATCTTGTTCAACTTGAAGTGATAGACTGTCCCAATCTTACCGGTAGATTGGCGTCAGACAGTCTCCCATCTCTTGTGTCTTTGACGGTATGGCAATGCCCAGAATTCGAATGTTTTCCAACAGATGGATTCCAGTCAAAGTTAAAATCACTTGACATCAGCGACTGTAAAGGTGTGAATGCAAAGAGTATGCAGAGTCTGAACAAGGGTCTCCGAACACTCACCTCTCTTCAGTCTCTTGAAAGATTGTCACTTGATTTTGACTACGACGAAAATGTAGATTGGTTTGCGAAGGAGCAGGAGGGGCTGTTTCCCAGCACTCTCACATATCTCGAGATCAGCCGTCTGAGTTGTGAGACCATCGACTGCGCCAAGTGGTTTGGCCATCTCAACTCTCTTCAAGAATTGGTTATTGACGACTGCTCTGCGCTCCGGTGCTTGCCAGATAGTGGGCTACCCACTTCTCTGAAAACCTTGAAGATTACGGGTTGCCCTGCTCTGTGTTGCTTGCCAGATAGTGGACTACCCTCTTCTCTTTCTCGTCTAGATATCATCGAATGTCCTTTGCTTGAGAAACGGTGCCAAAGAGAGACGGGTGAAGATTGGCCCAAGATTGCTCACATCAAGCGCATAAAGATCAATTTCAAAATGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

428

Amino Acids

47.79

Weight (kDa)

5.19

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 28 - 153 3.7e-30 R13L1/DRL21 LRRs
LRR_R13L1-DRL21 PF25019 283 - 374 1e-05 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08710
prunus_persica Prupe.2G114800_v2.0.a1
rosa_laevigata RLG00000028946
rosa_multiflora Rmu_sc0007696.1_g000013 Rmu_ssc0000434.1_g000060
rosa_roxburghii Rroxscaffold_4G00310270
rosa_rugosa Rorug01G0169600
rosa_samantha Rh1AG186100 Rh1BG152600 Rh1CG171800 Rh1DG185000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 1209
AccB7I CCANNNNNTGG 3 cut(s) 755, 1079, 1148
AccII CGCG 1 cut(s) 114
AciI CCGC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 1012
AcsI RAATTY 3 cut(s) 79, 488, 734
AcuI CTGAAG 1 cut(s) 845
AcyI GRCGYC 1 cut(s) 683
AfiI CCNNNNNNNGG 6 cut(s) 14, 149, 419, 755, 1079, 1148
AflII CTTAAG 1 cut(s) 188
AgeI ACCGGT 1 cut(s) 671
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 4 cut(s) 100, 274, 427, 445
AluI AGCT 4 cut(s) 100, 274, 427, 445
Alw26I GTCTC 5 cut(s) 698, 845, 870, 980, 1214
AlwNI CAGNNNCTG 2 cut(s) 795, 829
Ama87I CYCGRG 2 cut(s) 44, 962
AoxI GGCC 3 cut(s) 159, 1012, 1235
ApoI RAATTY 3 cut(s) 79, 488, 734
AsiGI ACCGGT 1 cut(s) 671
Asp700I GAANNNNTTC 2 cut(s) 220, 744
AspLEI GCGC 4 cut(s) 114, 1001, 1060, 1260
AspS9I GGNCC 1 cut(s) 1236
AsuHPI GGTGA 4 cut(s) 512, 614, 844, 1238
AsuII TTCGAA 1 cut(s) 738
AvaI CYCGRG 2 cut(s) 44, 962
BaeGI GKGCMC 1 cut(s) 144
BalI TGGCCA 1 cut(s) 1014
BanI GGYRCC 1 cut(s) 1209
BccI CCATC 4 cut(s) 706, 749, 998, 1023
BceAI ACGGC 1 cut(s) 957
BcgI CGANNNNNNTGC 2 cut(s) 1037, 1071
BciT130I CCWGG 1 cut(s) 293
BcoDI GTCTC 5 cut(s) 698, 845, 870, 980, 1214
BfaI CTAG 2 cut(s) 56, 1175
BfmI CTRYAG 1 cut(s) 246
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 326
BglII AGATCT 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 293
BmeT110I CYCGRG 2 cut(s) 44, 962
BmgT120I GGNCC 1 cut(s) 1236
BmiI GGNNCC 2 cut(s) 484, 1211
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 17
Bpu14I TTCGAA 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 287, 1220
BsaHI GRCGYC 1 cut(s) 683
BsaI GGTCTC 2 cut(s) 845, 980
BsaWI WCCGGW 2 cut(s) 671, 1062
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 6 cut(s) 14, 149, 419, 755, 1079, 1148
Bse118I RCCGGY 1 cut(s) 671
Bse1I ACTGG 1 cut(s) 763
Bse3DI GCAATG 1 cut(s) 731
BseBI CCWGG 1 cut(s) 293
BseLI CCNNNNNNNGG 6 cut(s) 14, 149, 419, 755, 1079, 1148
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 3 cut(s) 144, 161, 968
BseNI ACTGG 1 cut(s) 763
BseSI GKGCMC 1 cut(s) 144
BseYI CCCAGC 3 cut(s) 71, 143, 944
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 161, 1014, 1237
BshNI GGYRCC 1 cut(s) 1209
BshTI ACCGGT 1 cut(s) 671
BsiHKCI CYCGRG 2 cut(s) 44, 962
BsiSI CCGG 2 cut(s) 672, 1063
BslFI GGGAC 3 cut(s) 188, 435, 645
BslI CCNNNNNNNGG 6 cut(s) 14, 149, 419, 755, 1079, 1148
BsmAI GTCTC 5 cut(s) 698, 845, 870, 980, 1214
BsmBI CGTCTC 1 cut(s) 1214
BsmFI GGGAC 3 cut(s) 188, 435, 645
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 3 cut(s) 161, 1014, 1237
Bso31I GGTCTC 2 cut(s) 845, 980
BsoBI CYCGRG 2 cut(s) 44, 962
Bsp119I TTCGAA 1 cut(s) 738
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 3 cut(s) 28, 966, 1266
BspACI CCGC 1 cut(s) 114
BspANI GGCC 3 cut(s) 161, 1014, 1237
BspCNI CTCAG 3 cut(s) 143, 162, 969
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 484, 1211
BspMI ACCTGC 1 cut(s) 326
BspT104I TTCGAA 1 cut(s) 738
BspT107I GGYRCC 1 cut(s) 1209
BspTI CTTAAG 1 cut(s) 188
BspTNI GGTCTC 2 cut(s) 845, 980
BsrDI GCAATG 1 cut(s) 731
BsrFI RCCGGY 1 cut(s) 671
BsrI ACTGG 1 cut(s) 763
BssAI RCCGGY 1 cut(s) 671
BssMI GATC 3 cut(s) 28, 966, 1266
BssNI GRCGYC 1 cut(s) 683
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 6 cut(s) 247, 659, 692, 718, 797, 1209
Bst6I CTCTTC 3 cut(s) 864, 1032, 1165
BstACI GRCGYC 1 cut(s) 683
BstAFI CTTAAG 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 738
BstC8I GCNNGC 2 cut(s) 1070, 1139
BstDEI CTNAG 3 cut(s) 130, 170, 977
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 4 cut(s) 114, 1001, 1060, 1260
BstKTI GATC 3 cut(s) 31, 969, 1269
BstMAI GTCTC 5 cut(s) 698, 845, 870, 980, 1214
BstMBI GATC 3 cut(s) 28, 966, 1266
BstMWI GCNNNNNNNGC 2 cut(s) 271, 934
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 3 cut(s) 161, 1014, 1237
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 2 cut(s) 1070, 1139
CaiI CAGNNNCTG 2 cut(s) 795, 829
CfoI GCGC 4 cut(s) 114, 1001, 1060, 1260
Cfr10I RCCGGY 1 cut(s) 671
Cfr13I GGNCC 1 cut(s) 1236
CseI GACGC 1 cut(s) 672
CspAI ACCGGT 1 cut(s) 671
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 2 cut(s) 286, 464
DdeI CTNAG 3 cut(s) 130, 170, 977
DpnI GATC 3 cut(s) 30, 968, 1268
DpnII GATC 3 cut(s) 28, 966, 1266
EaeI YGGCCR 1 cut(s) 1012
Eam1104I CTCTTC 3 cut(s) 864, 1032, 1165
EarI CTCTTC 3 cut(s) 864, 1032, 1165
Eco147I AGGCCT 1 cut(s) 161
Eco31I GGTCTC 2 cut(s) 845, 980
Eco32I GATATC 2 cut(s) 542, 1180
Eco57I CTGAAG 1 cut(s) 845
Eco88I CYCGRG 2 cut(s) 44, 962
EcoRI GAATTC 2 cut(s) 488, 734
EcoRII CCWGG 1 cut(s) 291
EcoRV GATATC 2 cut(s) 542, 1180
Esp3I CGTCTC 1 cut(s) 1214
FaeI CATG 2 cut(s) 289, 467
FaqI GGGAC 3 cut(s) 188, 435, 645
FatI CATG 2 cut(s) 285, 463
FspBI CTAG 2 cut(s) 56, 1175
GlaI GCGC 4 cut(s) 113, 1000, 1059, 1259
GsaI CCCAGC 3 cut(s) 75, 147, 948
GsuI CTGGAG 1 cut(s) 17
HaeIII GGCC 3 cut(s) 161, 1014, 1237
HapII CCGG 2 cut(s) 672, 1063
HgaI GACGC 1 cut(s) 672
HhaI GCGC 4 cut(s) 114, 1001, 1060, 1260
Hin1I GRCGYC 1 cut(s) 683
Hin1II CATG 2 cut(s) 289, 467
Hin6I GCGC 4 cut(s) 112, 999, 1058, 1258
HinP1I GCGC 4 cut(s) 112, 999, 1058, 1258
HindIII AAGCTT 2 cut(s) 98, 272
HinfI GANTC 3 cut(s) 221, 759, 826
HpaII CCGG 2 cut(s) 672, 1063
HphI GGTGA 4 cut(s) 512, 614, 844, 1238
Hpy166II GTNNAC 1 cut(s) 1151
Hpy188I TCNGA 7 cut(s) 346, 487, 688, 831, 845, 978, 1098
Hpy188III TCNNGA 6 cut(s) 34, 869, 962, 964, 1031, 1175
Hpy8I GTNNAC 1 cut(s) 1151
Hpy99I CGWCG 1 cut(s) 902
HpyAV CCTTC 4 cut(s) 210, 227, 441, 916
HpyCH4III ACNGT 6 cut(s) 247, 659, 692, 718, 797, 1209
HpyCH4V TGCA 4 cut(s) 335, 564, 812, 823
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 934
HpyF3I CTNAG 3 cut(s) 130, 170, 977
Hsp92I GRCGYC 1 cut(s) 683
Hsp92II CATG 2 cut(s) 289, 467
HspAI GCGC 4 cut(s) 112, 999, 1058, 1258
Kzo9I GATC 3 cut(s) 28, 966, 1266
LmnI GCTCC 2 cut(s) 925, 1065
LweI GCATC 1 cut(s) 27
MaeI CTAG 2 cut(s) 56, 1175
MaeIII GTNAC 1 cut(s) 879
MalI GATC 3 cut(s) 30, 968, 1268
MboI GATC 3 cut(s) 28, 966, 1266
MboII GAAGA 8 cut(s) 242, 263, 348, 851, 1019, 1120, 1152, 1241
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 144
MlsI TGGCCA 1 cut(s) 1014
MluNI TGGCCA 1 cut(s) 1014
MlyI GAGTC 1 cut(s) 835
MmeI TCCRAC 2 cut(s) 577, 773
Mox20I TGGCCA 1 cut(s) 1014
MroXI GAANNNNTTC 2 cut(s) 220, 744
MscI TGGCCA 1 cut(s) 1014
MseI TTAA 5 cut(s) 92, 189, 378, 554, 773
Msp20I TGGCCA 1 cut(s) 1014
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 2 cut(s) 672, 1063
MspR9I CCNGG 1 cut(s) 293
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 271, 934
NdeII GATC 3 cut(s) 28, 966, 1266
NlaIII CATG 2 cut(s) 289, 467
NlaIV GGNNCC 2 cut(s) 484, 1211
NmuCI GTSAC 1 cut(s) 879
NspV TTCGAA 1 cut(s) 738
PaeR7I CTCGAG 1 cut(s) 962
PceI AGGCCT 1 cut(s) 161
PctI GAATGC 1 cut(s) 814
PdmI GAANNNNTTC 2 cut(s) 220, 744
PfeI GAWTC 2 cut(s) 221, 759
PflMI CCANNNNNTGG 3 cut(s) 755, 1079, 1148
PinAI ACCGGT 1 cut(s) 671
PleI GAGTC 1 cut(s) 834
PpsI GAGTC 1 cut(s) 834
Psp6I CCWGG 1 cut(s) 291
PspFI CCCAGC 3 cut(s) 71, 143, 944
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 484, 1211
PspPI GGNCC 1 cut(s) 1236
PstNI CAGNNNCTG 2 cut(s) 795, 829
PsuI RGATCY 1 cut(s) 28
SaqAI TTAA 5 cut(s) 92, 189, 378, 554, 773
Sau3AI GATC 3 cut(s) 28, 966, 1266
Sau96I GGNCC 1 cut(s) 1236
SchI GAGTC 1 cut(s) 835
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 962
SfuI TTCGAA 1 cut(s) 738
SlaI CTCGAG 1 cut(s) 962
SmlI CTYRAG 4 cut(s) 188, 266, 962, 1199
SmoI CTYRAG 4 cut(s) 188, 266, 962, 1199
SseBI AGGCCT 1 cut(s) 161
SsiI CCGC 1 cut(s) 114
SspI AATATT 1 cut(s) 350
SspMI CTAG 2 cut(s) 56, 1175
StuI AGGCCT 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 6 cut(s) 247, 659, 692, 718, 797, 1209
TaqI TCGA 4 cut(s) 738, 963, 993, 1185
TfiI GAWTC 2 cut(s) 221, 759
Tru1I TTAA 5 cut(s) 92, 189, 378, 554, 773
Tru9I TTAA 5 cut(s) 92, 189, 378, 554, 773
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 1 cut(s) 879
Tsp45I GTSAC 1 cut(s) 879
TspDTI ATGAA 2 cut(s) 302, 452
TspRI CASTG 1 cut(s) 154
Van91I CCANNNNNTGG 3 cut(s) 755, 1079, 1148
Vha464I CTTAAG 1 cut(s) 188
XapI RAATTY 3 cut(s) 79, 488, 734
XbaI TCTAGA 1 cut(s) 1174
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 962
XmnI GAANNNNTTC 2 cut(s) 220, 744
XspI CTAG 2 cut(s) 56, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.