ubiquitin modification-dependent histone binding
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g08710 |
| prunus_persica | Prupe.2G114800_v2.0.a1 |
| rosa_laevigata | RLG00000028946 |
| rosa_multiflora | Rmu_sc0007696.1_g000013 Rmu_ssc0000434.1_g000060 |
| rosa_roxburghii | Rroxscaffold_4G00310270 |
| rosa_rugosa | Rorug01G0169600 |
| rosa_samantha | Rh1AG186100 Rh1BG152600 Rh1CG171800 Rh1DG185000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 169 |
| AgsI | TTSAA | 2 cut(s) | 77, 86 |
| AjnI | CCWGG | 1 cut(s) | 121 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 189, 221 |
| AoxI | GGCC | 1 cut(s) | 180 |
| AspS9I | GGNCC | 1 cut(s) | 200 |
| AsuHPI | GGTGA | 3 cut(s) | 254, 272, 281 |
| AvaII | GGWCC | 1 cut(s) | 200 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| BccI | CCATC | 5 cut(s) | 163, 191, 233, 242, 251 |
| BciT130I | CCWGG | 1 cut(s) | 123 |
| BclI | TGATCA | 2 cut(s) | 136, 262 |
| Bme1390I | CCNGG | 1 cut(s) | 123 |
| Bme18I | GGWCC | 1 cut(s) | 200 |
| BmgT120I | GGNCC | 1 cut(s) | 200 |
| BmiI | GGNNCC | 1 cut(s) | 10 |
| BmrFI | CCNGG | 1 cut(s) | 123 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| BsaBI | GATNNNNATC | 2 cut(s) | 261, 293 |
| BsaJI | CCNNGG | 1 cut(s) | 196 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 169 |
| Bse8I | GATNNNNATC | 2 cut(s) | 261, 293 |
| BseBI | CCWGG | 1 cut(s) | 123 |
| BseDI | CCNNGG | 1 cut(s) | 196 |
| BseGI | GGATG | 1 cut(s) | 178 |
| BseJI | GATNNNNATC | 2 cut(s) | 261, 293 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 169 |
| Bsh1285I | CGRYCG | 1 cut(s) | 297 |
| BshFI | GGCC | 1 cut(s) | 182 |
| BsiEI | CGRYCG | 1 cut(s) | 297 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 169 |
| BsmI | GAATGC | 1 cut(s) | 83 |
| BsnI | GGCC | 1 cut(s) | 182 |
| Bsp143I | GATC | 3 cut(s) | 136, 262, 294 |
| BspANI | GGCC | 1 cut(s) | 182 |
| BspLI | GGNNCC | 1 cut(s) | 10 |
| BssECI | CCNNGG | 1 cut(s) | 196 |
| BssMI | GATC | 3 cut(s) | 136, 262, 294 |
| BssT1I | CCWWGG | 1 cut(s) | 196 |
| Bst2UI | CCWGG | 1 cut(s) | 123 |
| BstF5I | GGATG | 1 cut(s) | 178 |
| BstKTI | GATC | 3 cut(s) | 139, 265, 297 |
| BstMBI | GATC | 3 cut(s) | 136, 262, 294 |
| BstMCI | CGRYCG | 1 cut(s) | 297 |
| BstNI | CCWGG | 1 cut(s) | 123 |
| BstSCI | CCNGG | 1 cut(s) | 121 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| BsuRI | GGCC | 1 cut(s) | 182 |
| BtsCI | GGATG | 1 cut(s) | 178 |
| Cfr13I | GGNCC | 1 cut(s) | 200 |
| CviAII | CATG | 3 cut(s) | 157, 266, 303 |
| CviJI | RGCY | 4 cut(s) | 11, 44, 62, 182 |
| CviKI_1 | RGCY | 4 cut(s) | 11, 44, 62, 182 |
| DpnI | GATC | 3 cut(s) | 138, 264, 296 |
| DpnII | GATC | 3 cut(s) | 136, 262, 294 |
| Eco130I | CCWWGG | 1 cut(s) | 196 |
| Eco47I | GGWCC | 1 cut(s) | 200 |
| EcoRII | CCWGG | 1 cut(s) | 121 |
| EcoT14I | CCWWGG | 1 cut(s) | 196 |
| EcoT22I | ATGCAT | 1 cut(s) | 83 |
| ErhI | CCWWGG | 1 cut(s) | 196 |
| FaeI | CATG | 3 cut(s) | 160, 269, 306 |
| FaiI | YATR | 5 cut(s) | 59, 158, 222, 267, 304 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 189, 221 |
| FatI | CATG | 3 cut(s) | 156, 265, 302 |
| FbaI | TGATCA | 2 cut(s) | 136, 262 |
| FokI | GGATG | 1 cut(s) | 185 |
| HaeIII | GGCC | 1 cut(s) | 182 |
| Hin1II | CATG | 3 cut(s) | 160, 269, 306 |
| HinfI | GANTC | 1 cut(s) | 188 |
| HphI | GGTGA | 3 cut(s) | 254, 272, 281 |
| Hpy188I | TCNGA | 1 cut(s) | 193 |
| Hpy188III | TCNNGA | 2 cut(s) | 49, 209 |
| HpyAV | CCTTC | 1 cut(s) | 55 |
| HpyCH4V | TGCA | 2 cut(s) | 81, 160 |
| Hsp92II | CATG | 3 cut(s) | 160, 269, 306 |
| Ksp22I | TGATCA | 2 cut(s) | 136, 262 |
| Kzo9I | GATC | 3 cut(s) | 136, 262, 294 |
| LmnI | GCTCC | 1 cut(s) | 8 |
| LpnPI | CCDG | 3 cut(s) | 108, 135, 222 |
| MaeIII | GTNAC | 1 cut(s) | 242 |
| MalI | GATC | 3 cut(s) | 138, 264, 296 |
| MboI | GATC | 3 cut(s) | 136, 262, 294 |
| MboII | GAAGA | 2 cut(s) | 44, 239 |
| MlyI | GAGTC | 1 cut(s) | 197 |
| MmeI | TCCRAC | 1 cut(s) | 216 |
| MnlI | CCTC | 1 cut(s) | 172 |
| Mph1103I | ATGCAT | 1 cut(s) | 83 |
| MspR9I | CCNGG | 1 cut(s) | 123 |
| Mva1269I | GAATGC | 1 cut(s) | 83 |
| MvaI | CCWGG | 1 cut(s) | 123 |
| NdeII | GATC | 3 cut(s) | 136, 262, 294 |
| NlaIII | CATG | 3 cut(s) | 160, 269, 306 |
| NlaIV | GGNNCC | 1 cut(s) | 10 |
| NmuCI | GTSAC | 1 cut(s) | 242 |
| NsiI | ATGCAT | 1 cut(s) | 83 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 252 |
| PctI | GAATGC | 1 cut(s) | 83 |
| PfoI | TCCNGGA | 1 cut(s) | 121 |
| Ple19I | CGATCG | 1 cut(s) | 297 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| Psp6I | CCWGG | 1 cut(s) | 121 |
| PspGI | CCWGG | 1 cut(s) | 121 |
| PspN4I | GGNNCC | 1 cut(s) | 10 |
| PspPI | GGNCC | 1 cut(s) | 200 |
| PvuI | CGATCG | 1 cut(s) | 297 |
| Sau3AI | GATC | 3 cut(s) | 136, 262, 294 |
| Sau96I | GGNCC | 1 cut(s) | 200 |
| SchI | GAGTC | 1 cut(s) | 197 |
| ScrFI | CCNGG | 1 cut(s) | 123 |
| SetI | ASST | 2 cut(s) | 68, 165 |
| SinI | GGWCC | 1 cut(s) | 200 |
| StyD4I | CCNGG | 1 cut(s) | 121 |
| StyI | CCWWGG | 1 cut(s) | 196 |
| TaqI | TCGA | 3 cut(s) | 48, 186, 293 |
| TseFI | GTSAC | 1 cut(s) | 242 |
| Tsp45I | GTSAC | 1 cut(s) | 242 |
| TspDTI | ATGAA | 3 cut(s) | 33, 145, 240 |
| VpaK11BI | GGWCC | 1 cut(s) | 200 |
| Zsp2I | ATGCAT | 1 cut(s) | 83 |