RLG00000028946
MYB Family

ubiquitin modification-dependent histone binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018070
Physical Location & Seq
Reverse (-)
30470357 .. 30470686
330 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028946

Sequence Viewer

Length: 330 bp
ATGGCAGGAACTAGTGATCAATGGACTAGGGAAGAAAACAAATCTTTCGAGGTTGCCCTAGCGGCAAACTGGAAGTGCATTGAGAAAGGGGAATGGGAGAAGATTGCTTCATTGATTCCGGGGAAATCCATTGATCAAATAAAAGCACACTTCCGGCAGCTGTTGGATGATGTAGCAGCCATCGAGGATGACCAAGTGCCCTTTCCTAGTTACGCAGATGAAGATTATCTGATCAAGGAAGTCAGAAGTGGCGTCCAGGATGGTAAAGATTGTGGTGGTGAGCCAAAAGCGGTGGAAAGACAAGCCAAGTCAGTGGAAAAAACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

110

Amino Acids

12.21

Weight (kDa)

4.82

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 7 - 55 1.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018070)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08710
prunus_persica Prupe.2G114800_v2.0.a1
rosa_laevigata RLG00000028946
rosa_multiflora Rmu_sc0007696.1_g000013 Rmu_ssc0000434.1_g000060
rosa_roxburghii Rroxscaffold_4G00310270
rosa_rugosa Rorug01G0169600
rosa_samantha Rh1AG186100 Rh1BG152600 Rh1CG171800 Rh1DG185000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 62, 290
AcyI GRCGYC 1 cut(s) 252
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 255
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 157, 176
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 169, 188
BccI CCATC 2 cut(s) 188, 254
BciT130I CCWGG 1 cut(s) 257
BclI TGATCA 3 cut(s) 16, 133, 231
BcnI CCSGG 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 4 cut(s) 12, 27, 59, 207
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 3 cut(s) 63, 158, 177
BlsI GCNGC 3 cut(s) 64, 159, 178
Bme1390I CCNGG 2 cut(s) 120, 257
BmrFI CCNGG 2 cut(s) 120, 257
BpuMI CCSGG 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 119
BseGI GGATG 3 cut(s) 172, 193, 265
BseNI ACTGG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 201
BseXI GCAGC 2 cut(s) 169, 188
BsiSI CCGG 2 cut(s) 119, 154
Bsp1286I GDGCHC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 16, 133, 231
BspACI CCGC 2 cut(s) 62, 290
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 3 cut(s) 16, 133, 231
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 252
BstF5I GGATG 3 cut(s) 172, 193, 265
BstKTI GATC 3 cut(s) 19, 136, 234
BstMBI GATC 3 cut(s) 16, 133, 231
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 2 cut(s) 118, 255
BstSLI GKGCMC 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 169, 188
BstXI CCANNNNNNTGG 1 cut(s) 313
BtsCI GGATG 3 cut(s) 172, 193, 265
BtsIMutI CAGTG 1 cut(s) 318
CseI GACGC 1 cut(s) 241
CspCI CAANNNNNGTGG 2 cut(s) 273, 308
CviJI RGCY 4 cut(s) 160, 179, 283, 305
CviKI_1 RGCY 4 cut(s) 160, 179, 283, 305
DpnI GATC 3 cut(s) 18, 135, 233
DpnII GATC 3 cut(s) 16, 133, 231
EcoRII CCWGG 1 cut(s) 255
FbaI TGATCA 3 cut(s) 16, 133, 231
Fnu4HI GCNGC 3 cut(s) 63, 158, 177
FokI GGATG 3 cut(s) 179, 200, 272
Fsp4HI GCNGC 3 cut(s) 63, 158, 177
FspBI CTAG 4 cut(s) 12, 27, 59, 207
GluI GCNGC 3 cut(s) 63, 158, 177
HapII CCGG 2 cut(s) 119, 154
HgaI GACGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 252
HinfI GANTC 1 cut(s) 115
HpaII CCGG 2 cut(s) 119, 154
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 231, 245
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 252
Ksp22I TGATCA 3 cut(s) 16, 133, 231
Kzo9I GATC 3 cut(s) 16, 133, 231
LpnPI CCDG 5 cut(s) 55, 132, 167, 242, 269
Lsp1109I GCAGC 2 cut(s) 169, 188
MaeI CTAG 4 cut(s) 12, 27, 59, 207
MaeIII GTNAC 1 cut(s) 209
MalI GATC 3 cut(s) 18, 135, 233
MboI GATC 3 cut(s) 16, 133, 231
MboII GAAGA 3 cut(s) 44, 112, 233
MhlI GDGCHC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 2 cut(s) 43, 178
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 2 cut(s) 119, 154
MspR9I CCNGG 2 cut(s) 120, 257
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 120
NdeII GATC 3 cut(s) 16, 133, 231
PfeI GAWTC 1 cut(s) 115
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 3 cut(s) 64, 159, 178
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 160
SatI GCNGC 3 cut(s) 63, 158, 177
Sau3AI GATC 3 cut(s) 16, 133, 231
ScrFI CCNGG 2 cut(s) 120, 257
SduI GDGCHC 1 cut(s) 201
SetI ASST 2 cut(s) 54, 162
SpeI ACTAGT 1 cut(s) 11
SsiI CCGC 2 cut(s) 62, 290
SspMI CTAG 4 cut(s) 12, 27, 59, 207
StyD4I CCNGG 2 cut(s) 118, 255
TaqI TCGA 2 cut(s) 48, 183
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 1 cut(s) 318
TseI GCWGC 2 cut(s) 157, 176
TspDTI ATGAA 2 cut(s) 99, 234
TspRI CASTG 1 cut(s) 318
XspI CTAG 4 cut(s) 12, 27, 59, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.