ubiquitin modification-dependent histone binding
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g08710 |
| prunus_persica | Prupe.2G114800_v2.0.a1 |
| rosa_laevigata | RLG00000028946 |
| rosa_multiflora | Rmu_sc0007696.1_g000013 Rmu_ssc0000434.1_g000060 |
| rosa_roxburghii | Rroxscaffold_4G00310270 |
| rosa_rugosa | Rorug01G0169600 |
| rosa_samantha | Rh1AG186100 Rh1BG152600 Rh1CG171800 Rh1DG185000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 62, 290 |
| AcyI | GRCGYC | 1 cut(s) | 252 |
| AfaI | GTAC | 1 cut(s) | 198 |
| AhlI | ACTAGT | 1 cut(s) | 11 |
| AjnI | CCWGG | 1 cut(s) | 255 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 186, 218 |
| AluBI | AGCT | 2 cut(s) | 44, 160 |
| AluI | AGCT | 2 cut(s) | 44, 160 |
| ApeKI | GCWGC | 2 cut(s) | 157, 176 |
| AsuC2I | CCSGG | 1 cut(s) | 120 |
| AsuHPI | GGTGA | 2 cut(s) | 290, 304 |
| BbvI | GCAGC | 2 cut(s) | 169, 188 |
| BccI | CCATC | 2 cut(s) | 188, 254 |
| BciT130I | CCWGG | 1 cut(s) | 257 |
| BclI | TGATCA | 2 cut(s) | 16, 133 |
| BcnI | CCSGG | 1 cut(s) | 120 |
| BcuI | ACTAGT | 1 cut(s) | 11 |
| BfaI | CTAG | 4 cut(s) | 12, 27, 59, 207 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 62 |
| BisI | GCNGC | 3 cut(s) | 63, 158, 177 |
| BlsI | GCNGC | 3 cut(s) | 64, 159, 178 |
| Bme1390I | CCNGG | 2 cut(s) | 120, 257 |
| BmrFI | CCNGG | 2 cut(s) | 120, 257 |
| BpuMI | CCSGG | 1 cut(s) | 120 |
| Bsa29I | ATCGAT | 1 cut(s) | 113 |
| BsaHI | GRCGYC | 1 cut(s) | 252 |
| BsaJI | CCNNGG | 1 cut(s) | 119 |
| Bse1I | ACTGG | 1 cut(s) | 74 |
| BseBI | CCWGG | 1 cut(s) | 257 |
| BseCI | ATCGAT | 1 cut(s) | 113 |
| BseDI | CCNNGG | 1 cut(s) | 119 |
| BseGI | GGATG | 3 cut(s) | 172, 193, 265 |
| BseNI | ACTGG | 1 cut(s) | 74 |
| BseXI | GCAGC | 2 cut(s) | 169, 188 |
| BshVI | ATCGAT | 1 cut(s) | 113 |
| BsiSI | CCGG | 2 cut(s) | 119, 154 |
| Bsp143I | GATC | 3 cut(s) | 16, 133, 231 |
| BspACI | CCGC | 2 cut(s) | 62, 290 |
| BspDI | ATCGAT | 1 cut(s) | 113 |
| BsrI | ACTGG | 1 cut(s) | 74 |
| BssECI | CCNNGG | 1 cut(s) | 119 |
| BssMI | GATC | 3 cut(s) | 16, 133, 231 |
| BssNI | GRCGYC | 1 cut(s) | 252 |
| Bst2UI | CCWGG | 1 cut(s) | 257 |
| BstACI | GRCGYC | 1 cut(s) | 252 |
| BstF5I | GGATG | 3 cut(s) | 172, 193, 265 |
| BstKTI | GATC | 3 cut(s) | 19, 136, 234 |
| BstMBI | GATC | 3 cut(s) | 16, 133, 231 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 62 |
| BstNI | CCWGG | 1 cut(s) | 257 |
| BstSCI | CCNGG | 2 cut(s) | 118, 255 |
| BstV1I | GCAGC | 2 cut(s) | 169, 188 |
| Bsu15I | ATCGAT | 1 cut(s) | 113 |
| BsuTUI | ATCGAT | 1 cut(s) | 113 |
| BtsCI | GGATG | 3 cut(s) | 172, 193, 265 |
| BtsIMutI | CAGTG | 1 cut(s) | 318 |
| ClaI | ATCGAT | 1 cut(s) | 113 |
| CseI | GACGC | 1 cut(s) | 241 |
| Csp6I | GTAC | 1 cut(s) | 197 |
| CviJI | RGCY | 5 cut(s) | 44, 160, 179, 283, 305 |
| CviKI_1 | RGCY | 5 cut(s) | 44, 160, 179, 283, 305 |
| CviQI | GTAC | 1 cut(s) | 197 |
| DpnI | GATC | 3 cut(s) | 18, 135, 233 |
| DpnII | GATC | 3 cut(s) | 16, 133, 231 |
| EcoRII | CCWGG | 1 cut(s) | 255 |
| FaiI | YATR | 1 cut(s) | 213 |
| FbaI | TGATCA | 2 cut(s) | 16, 133 |
| Fnu4HI | GCNGC | 3 cut(s) | 63, 158, 177 |
| FokI | GGATG | 3 cut(s) | 179, 200, 272 |
| Fsp4HI | GCNGC | 3 cut(s) | 63, 158, 177 |
| FspBI | CTAG | 4 cut(s) | 12, 27, 59, 207 |
| GluI | GCNGC | 3 cut(s) | 63, 158, 177 |
| HapII | CCGG | 2 cut(s) | 119, 154 |
| HgaI | GACGC | 1 cut(s) | 241 |
| Hin1I | GRCGYC | 1 cut(s) | 252 |
| HindIII | AAGCTT | 1 cut(s) | 42 |
| HinfI | GANTC | 1 cut(s) | 115 |
| HpaII | CCGG | 2 cut(s) | 119, 154 |
| HphI | GGTGA | 2 cut(s) | 290, 304 |
| Hpy188I | TCNGA | 2 cut(s) | 231, 245 |
| HpyCH4V | TGCA | 2 cut(s) | 78, 215 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 62 |
| Hsp92I | GRCGYC | 1 cut(s) | 252 |
| Ksp22I | TGATCA | 2 cut(s) | 16, 133 |
| Kzo9I | GATC | 3 cut(s) | 16, 133, 231 |
| LpnPI | CCDG | 5 cut(s) | 55, 132, 167, 242, 269 |
| Lsp1109I | GCAGC | 2 cut(s) | 169, 188 |
| MaeI | CTAG | 4 cut(s) | 12, 27, 59, 207 |
| MalI | GATC | 3 cut(s) | 18, 135, 233 |
| MboI | GATC | 3 cut(s) | 16, 133, 231 |
| MboII | GAAGA | 4 cut(s) | 44, 112, 233, 328 |
| MmeI | TCCRAC | 1 cut(s) | 144 |
| MnlI | CCTC | 2 cut(s) | 43, 178 |
| MspA1I | CMGCKG | 1 cut(s) | 160 |
| MspI | CCGG | 2 cut(s) | 119, 154 |
| MspR9I | CCNGG | 2 cut(s) | 120, 257 |
| MvaI | CCWGG | 1 cut(s) | 257 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 62 |
| NciI | CCSGG | 1 cut(s) | 120 |
| NdeII | GATC | 3 cut(s) | 16, 133, 231 |
| PfeI | GAWTC | 1 cut(s) | 115 |
| PfoI | TCCNGGA | 1 cut(s) | 255 |
| PkrI | GCNGC | 3 cut(s) | 64, 159, 178 |
| Psp6I | CCWGG | 1 cut(s) | 255 |
| PspGI | CCWGG | 1 cut(s) | 255 |
| PvuII | CAGCTG | 1 cut(s) | 160 |
| RsaI | GTAC | 1 cut(s) | 198 |
| RsaNI | GTAC | 1 cut(s) | 197 |
| SatI | GCNGC | 3 cut(s) | 63, 158, 177 |
| Sau3AI | GATC | 3 cut(s) | 16, 133, 231 |
| ScrFI | CCNGG | 2 cut(s) | 120, 257 |
| SetI | ASST | 3 cut(s) | 46, 54, 162 |
| SpeI | ACTAGT | 1 cut(s) | 11 |
| SsiI | CCGC | 2 cut(s) | 62, 290 |
| SspMI | CTAG | 4 cut(s) | 12, 27, 59, 207 |
| StyD4I | CCNGG | 2 cut(s) | 118, 255 |
| TaqI | TCGA | 3 cut(s) | 48, 113, 183 |
| TauI | GCSGC | 1 cut(s) | 65 |
| TfiI | GAWTC | 1 cut(s) | 115 |
| TscAI | CASTG | 1 cut(s) | 318 |
| TseI | GCWGC | 2 cut(s) | 157, 176 |
| TspDTI | ATGAA | 2 cut(s) | 99, 234 |
| TspRI | CASTG | 1 cut(s) | 318 |
| XspI | CTAG | 4 cut(s) | 12, 27, 59, 207 |