Rw6G037140
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0017876
Physical Location & Seq
Forward (+)
61581447 .. 61584396
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037140.1

Sequence Viewer

Length: 1329 bp
ATGCCGCTGGAGAAGGTATTTGCAGATTTGATGCTTGAGCAGGTTGCTCAAGGGAATAGGTTGAACCATGCTTTTAGTAATAAAGCATGGAAGTATATACACCGTGAGTTTAATAGACAAACAGGGTTAAATTACGATAAGCAGCAGTTGAAAAATCATCACGGAGTGTTGAGAAGGTCTTACCTTAGTGTAAAGTCACTGCTTGATCAGGATGGCTTTAGCTGGGACAAGTCTCGGTGCATGGTAATTGCAGAGAGCGATGTGTGGGCAAATTGCATTGAGAAGCATCCTGAAATTGAGGCAGTAAGAGTCAAAGGCTGCCCACTGTACGAACAGTTGGACAGCATATTTTCTGAGCCAGGCAGTGCTGGAAATTGTGCAGCGCCTCAAGTCCCTCAACCACAAATAGCTGCTTTCCAGATGGATACTCTTCCTGGTGAAGATCAATCCAAGCAAGATCAATCAAGAGCAAAGTGGACTGTGGCACTGGATAAAATACTCTTAAACTTGTTGATGGAGCAAACTCGACAGAATAAGATGTCTAATAAGAAGGCATGGAAACATATACAAAATGAATTCAATTACAGAACTGGTTTAACGTTTGATGGTGAACAGTTAAGGAATCACCAAAATGTTCTGAGAAGGGTGTATAATAACATAAAGACTGTTATTGATCAAGGCGGTTTTAGTTGGGATGAGTGTCGCCATGTGGTAGTGGCTGATGATGAAGTGTGGGAGAAGTACATCATGGCACATCCCGAGGCTGAAACAGTCAGAAACAAGGAGTGTCCGATTTTTAAAGATTTATGCACATTATTTTCAGATCCAAGAGAAGAGGGAAGATACGTTCAATCAAGTCATGATGTGAAGTTGGATCAACAAAAAGTGGAAATGGATGACACTCCTGAAACTGGTAGTGTATCTGCTGAACCTGCAGTAGACGAGGCAACGTCGCGCCTATCCGAGGAAGTGAATATGTCTAGTGGAAGGAACAAGCGCCGGAGTTTGATAAAACCACTAATAAGTTCAACCCGCCAGAGGAGGCGAGTGTGTAGGGAAACTAGTCAGACTGGCGTCAATGATGTTTCCCGGCATAAGGAGGGAAACAAGACAGCAGCTGCAGCAGTAGTAGCAGCACAAAGTGGTGACCGATTCTCGATATCTAGTTGCATTGAAGTGTTGAATGAGATGGGAGGGGTGGATCAAGAGGTTTATTTGGCTGCGTTGGATTTGTTCCAGGATCCTGACCGCAGAGAAACATTCATATGTATCAAAAGTGATATCAAATTGGCATGGCTCAAGGCCAAGTGTAAATCTCTTCCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

442

Amino Acids

50.41

Weight (kDa)

6.62

Isoelectric Point (pI)

58.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 4 - 91 3.8e-26 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 158 - 248 3.4e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017876)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g38660
rosa_chinensis RchiOBHm_Chr6g0302651
rosa_laevigata RLG00000011151
rosa_multiflora Rmu_sc0005455.1_g000003
rosa_roxburghii Rroxscaffold_7G00165470
rosa_rugosa Rorug06G0315800
rosa_samantha Rh6AG429100 Rh6BG473400 Rh6CG441400 Rh6DG428200
rosa_wichuraiana Rw6G037140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 31, 940
AccI GTMKAC 1 cut(s) 939
AccII CGCG 1 cut(s) 955
AciI CCGC 4 cut(s) 5, 681, 1033, 1249
AclI AACGTT 1 cut(s) 599
AclWI GGATC 5 cut(s) 818, 882, 1209, 1235, 1248
AcsI RAATTY 1 cut(s) 575
AcyI GRCGYC 1 cut(s) 1074
AdeI CACNNNGTG 2 cut(s) 166, 1142
AfaI GTAC 2 cut(s) 329, 743
AfiI CCNNNNNNNGG 4 cut(s) 911, 964, 1038, 1096
AgsI TTSAA 7 cut(s) 64, 151, 580, 851, 1029, 1175, 1183
AhlI ACTAGT 1 cut(s) 1061
AjnI CCWGG 3 cut(s) 358, 433, 1236
AloI GAACNNNNNNTCC 2 cut(s) 831, 863
AluBI AGCT 3 cut(s) 222, 410, 1118
AluI AGCT 3 cut(s) 222, 410, 1118
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 5 cut(s) 818, 882, 1209, 1235, 1248
AlwNI CAGNNNCTG 1 cut(s) 1118
Ama87I CYCGRG 1 cut(s) 758
AoxI GGCC 1 cut(s) 1302
ApeKI GCWGC 9 cut(s) 142, 318, 380, 410, 1115, 1118, 1121, 1133, 1220
ApoI RAATTY 1 cut(s) 575
AspLEI GCGC 3 cut(s) 385, 957, 999
AsuC2I CCSGG 1 cut(s) 1090
AsuHPI GGTGA 4 cut(s) 449, 617, 620, 1157
AvaI CYCGRG 1 cut(s) 758
BamHI GGATCC 1 cut(s) 1240
BbvI GCAGC 9 cut(s) 154, 305, 392, 397, 1105, 1127, 1133, 1145, 1207
BccI CCATC 5 cut(s) 206, 415, 508, 599, 1183
BciT130I CCWGG 3 cut(s) 360, 435, 1238
BciVI GTATCC 1 cut(s) 418
BclI TGATCA 2 cut(s) 205, 673
BcnI CCSGG 1 cut(s) 1090
BcoDI GTCTC 1 cut(s) 237
BcuI ACTAGT 1 cut(s) 1061
BfaI CTAG 3 cut(s) 981, 1062, 1164
BfmI CTRYAG 2 cut(s) 933, 1119
BfoI RGCGCY 2 cut(s) 386, 1000
BfuAI ACCTGC 2 cut(s) 31, 940
BfuI GTATCC 1 cut(s) 418
Bme1390I CCNGG 4 cut(s) 360, 435, 1090, 1238
BmeT110I CYCGRG 1 cut(s) 758
BmiI GGNNCC 1 cut(s) 1242
BmrFI CCNGG 4 cut(s) 360, 435, 1090, 1238
BmsI GCATC 2 cut(s) 21, 295
BoxI GACNNNNGTC 1 cut(s) 1073
BpmI CTGGAG 1 cut(s) 29
BpuEI CTTGAG 4 cut(s) 33, 56, 372, 1283
BpuMI CCSGG 1 cut(s) 1090
BsaHI GRCGYC 1 cut(s) 1074
BsaJI CCNNGG 2 cut(s) 759, 963
Bsc4I CCNNNNNNNGG 4 cut(s) 911, 964, 1038, 1096
Bse1I ACTGG 4 cut(s) 492, 595, 916, 1075
BseBI CCWGG 3 cut(s) 360, 435, 1238
BseDI CCNNGG 2 cut(s) 759, 963
BseGI GGATG 5 cut(s) 217, 286, 700, 754, 901
BseLI CCNNNNNNNGG 4 cut(s) 911, 964, 1038, 1096
BseMII CTCAG 2 cut(s) 345, 629
BseNI ACTGG 4 cut(s) 492, 595, 916, 1075
BseRI GAGGAG 1 cut(s) 1054
BseXI GCAGC 9 cut(s) 154, 305, 392, 397, 1105, 1127, 1133, 1145, 1207
BseYI CCCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 955
BshFI GGCC 1 cut(s) 1304
BsiHKCI CYCGRG 1 cut(s) 758
BsiSI CCGG 2 cut(s) 1000, 1090
BslFI GGGAC 2 cut(s) 239, 377
BslI CCNNNNNNNGG 4 cut(s) 911, 964, 1038, 1096
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 239, 377
BsnI GGCC 1 cut(s) 1304
BsoBI CYCGRG 1 cut(s) 758
Bsp143I GATC 8 cut(s) 205, 442, 457, 673, 823, 874, 1201, 1240
BspACI CCGC 4 cut(s) 5, 681, 1033, 1249
BspANI GGCC 1 cut(s) 1304
BspCNI CTCAG 2 cut(s) 346, 630
BspFNI CGCG 1 cut(s) 955
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 1 cut(s) 1242
BspMAI CTGCAG 2 cut(s) 937, 1123
BspMI ACCTGC 2 cut(s) 31, 940
BspPI GGATC 5 cut(s) 818, 882, 1209, 1235, 1248
BsrI ACTGG 4 cut(s) 492, 595, 916, 1075
BssECI CCNNGG 2 cut(s) 759, 963
BssMI GATC 8 cut(s) 205, 442, 457, 673, 823, 874, 1201, 1240
BssNI GRCGYC 1 cut(s) 1074
Bst2UI CCWGG 3 cut(s) 360, 435, 1238
Bst4CI ACNGT 7 cut(s) 104, 327, 336, 481, 615, 667, 772
Bst6I CTCTTC 3 cut(s) 435, 828, 1323
BstACI GRCGYC 1 cut(s) 1074
BstDEI CTNAG 3 cut(s) 185, 354, 638
BstEII GGTNACC 1 cut(s) 1145
BstENI CCTNNNNNAGG 1 cut(s) 962
BstF5I GGATG 5 cut(s) 217, 286, 700, 754, 901
BstFNI CGCG 1 cut(s) 955
BstH2I RGCGCY 2 cut(s) 386, 1000
BstHHI GCGC 3 cut(s) 385, 957, 999
BstKTI GATC 8 cut(s) 208, 445, 460, 676, 826, 877, 1204, 1243
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 8 cut(s) 205, 442, 457, 673, 823, 874, 1201, 1240
BstMWI GCNNNNNNNGC 3 cut(s) 932, 1121, 1130
BstNI CCWGG 3 cut(s) 360, 435, 1238
BstPAI GACNNNNGTC 1 cut(s) 1073
BstPI GGTNACC 1 cut(s) 1145
BstSCI CCNGG 4 cut(s) 358, 433, 1088, 1236
BstSFI CTRYAG 2 cut(s) 933, 1119
BstUI CGCG 1 cut(s) 955
BstV1I GCAGC 9 cut(s) 154, 305, 392, 397, 1105, 1127, 1133, 1145, 1207
BstX2I RGATCY 2 cut(s) 823, 1240
BstYI RGATCY 2 cut(s) 823, 1240
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 1 cut(s) 1304
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 5 cut(s) 217, 286, 700, 754, 901
BtsI GCAGTG 2 cut(s) 197, 370
BtsIMutI CAGTG 4 cut(s) 197, 323, 370, 485
BveI ACCTGC 2 cut(s) 31, 940
CaiI CAGNNNCTG 1 cut(s) 1118
CciI TCATGA 1 cut(s) 859
CfoI GCGC 3 cut(s) 385, 957, 999
CseI GACGC 1 cut(s) 1063
Csp6I GTAC 2 cut(s) 328, 742
CviAII CATG 8 cut(s) 68, 87, 241, 555, 707, 748, 860, 1293
CviQI GTAC 2 cut(s) 328, 742
DdeI CTNAG 3 cut(s) 185, 354, 638
DpnI GATC 8 cut(s) 207, 444, 459, 675, 825, 876, 1203, 1242
DpnII GATC 8 cut(s) 205, 442, 457, 673, 823, 874, 1201, 1240
DraI TTTAAA 1 cut(s) 799
DraIII CACNNNGTG 2 cut(s) 166, 1142
Eam1104I CTCTTC 3 cut(s) 435, 828, 1323
EarI CTCTTC 3 cut(s) 435, 828, 1323
Eco32I GATATC 2 cut(s) 1161, 1282
Eco88I CYCGRG 1 cut(s) 758
Eco91I GGTNACC 1 cut(s) 1145
EcoNI CCTNNNNNAGG 1 cut(s) 962
EcoO65I GGTNACC 1 cut(s) 1145
EcoRI GAATTC 1 cut(s) 575
EcoRII CCWGG 3 cut(s) 358, 433, 1236
EcoRV GATATC 2 cut(s) 1161, 1282
FaeI CATG 8 cut(s) 71, 90, 244, 558, 710, 751, 863, 1296
FaqI GGGAC 2 cut(s) 239, 377
FatI CATG 8 cut(s) 67, 86, 240, 554, 706, 747, 859, 1292
FauI CCCGC 1 cut(s) 1040
FauNDI CATATG 1 cut(s) 1265
FbaI TGATCA 2 cut(s) 205, 673
FblI GTMKAC 1 cut(s) 939
FokI GGATG 5 cut(s) 224, 273, 707, 741, 908
FspBI CTAG 3 cut(s) 981, 1062, 1164
GlaI GCGC 3 cut(s) 384, 956, 998
GsaI CCCAGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 29
HaeII RGCGCY 2 cut(s) 386, 1000
HaeIII GGCC 1 cut(s) 1304
HapII CCGG 2 cut(s) 1000, 1090
HgaI GACGC 1 cut(s) 1063
HhaI GCGC 3 cut(s) 385, 957, 999
Hin1I GRCGYC 1 cut(s) 1074
Hin1II CATG 8 cut(s) 71, 90, 244, 558, 710, 751, 863, 1296
Hin6I GCGC 3 cut(s) 383, 955, 997
HinP1I GCGC 3 cut(s) 383, 955, 997
HinfI GANTC 3 cut(s) 309, 622, 1152
HpaII CCGG 2 cut(s) 1000, 1090
HphI GGTGA 4 cut(s) 449, 617, 620, 1157
Hpy166II GTNNAC 3 cut(s) 477, 611, 940
Hpy188I TCNGA 7 cut(s) 355, 639, 776, 792, 823, 964, 1068
Hpy8I GTNNAC 3 cut(s) 477, 611, 940
Hpy99I CGWCG 1 cut(s) 955
HpyAV CCTTC 5 cut(s) 7, 168, 544, 636, 981
HpyCH4III ACNGT 7 cut(s) 104, 327, 336, 481, 615, 667, 772
HpyCH4IV ACGT 3 cut(s) 599, 846, 950
HpyCH4V TGCA 9 cut(s) 23, 240, 251, 276, 380, 810, 935, 1121, 1170
HpyF10VI GCNNNNNNNGC 3 cut(s) 932, 1121, 1130
HpyF3I CTNAG 3 cut(s) 185, 354, 638
HpySE526I ACGT 3 cut(s) 599, 846, 950
Hsp92I GRCGYC 1 cut(s) 1074
Hsp92II CATG 8 cut(s) 71, 90, 244, 558, 710, 751, 863, 1296
HspAI GCGC 3 cut(s) 383, 955, 997
Ksp22I TGATCA 2 cut(s) 205, 673
Kzo9I GATC 8 cut(s) 205, 442, 457, 673, 823, 874, 1201, 1240
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 9 cut(s) 154, 305, 392, 397, 1105, 1127, 1133, 1145, 1207
LweI GCATC 2 cut(s) 21, 295
MaeI CTAG 3 cut(s) 981, 1062, 1164
MaeII ACGT 3 cut(s) 599, 846, 950
MaeIII GTNAC 2 cut(s) 195, 1145
MalI GATC 8 cut(s) 207, 444, 459, 675, 825, 876, 1203, 1242
MboI GATC 8 cut(s) 205, 442, 457, 673, 823, 874, 1201, 1240
MboII GAAGA 5 cut(s) 422, 452, 845, 852, 1310
MflI RGATCY 2 cut(s) 823, 1240
MluCI AATT 8 cut(s) 130, 246, 271, 294, 373, 575, 580, 1286
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 3 cut(s) 318, 852, 1206
MseI TTAA 6 cut(s) 111, 128, 503, 596, 617, 798
MslI CAYNNNNRTG 3 cut(s) 630, 1175, 1264
MspA1I CMGCKG 2 cut(s) 7, 1118
MspI CCGG 2 cut(s) 1000, 1090
MspR9I CCNGG 4 cut(s) 360, 435, 1090, 1238
MvaI CCWGG 3 cut(s) 360, 435, 1238
MvnI CGCG 1 cut(s) 955
MwoI GCNNNNNNNGC 3 cut(s) 932, 1121, 1130
NciI CCSGG 1 cut(s) 1090
NdeI CATATG 1 cut(s) 1265
NdeII GATC 8 cut(s) 205, 442, 457, 673, 823, 874, 1201, 1240
NlaIII CATG 8 cut(s) 71, 90, 244, 558, 710, 751, 863, 1296
NlaIV GGNNCC 1 cut(s) 1242
NmuCI GTSAC 2 cut(s) 195, 1145
PagI TCATGA 1 cut(s) 859
PfeI GAWTC 2 cut(s) 622, 1152
PfoI TCCNGGA 1 cut(s) 1236
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 1073
Psp1406I AACGTT 1 cut(s) 599
Psp6I CCWGG 3 cut(s) 358, 433, 1236
PspEI GGTNACC 1 cut(s) 1145
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 3 cut(s) 358, 433, 1236
PspN4I GGNNCC 1 cut(s) 1242
PstI CTGCAG 2 cut(s) 937, 1123
PstNI CAGNNNCTG 1 cut(s) 1118
PsuI RGATCY 2 cut(s) 823, 1240
PvuII CAGCTG 1 cut(s) 1118
RsaI GTAC 2 cut(s) 329, 743
RsaNI GTAC 2 cut(s) 328, 742
RseI CAYNNNNRTG 3 cut(s) 630, 1175, 1264
SaqAI TTAA 6 cut(s) 111, 128, 503, 596, 617, 798
Sau3AI GATC 8 cut(s) 205, 442, 457, 673, 823, 874, 1201, 1240
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 4 cut(s) 360, 435, 1090, 1238
SfaNI GCATC 2 cut(s) 21, 295
SfcI CTRYAG 2 cut(s) 933, 1119
SmiMI CAYNNNNRTG 3 cut(s) 630, 1175, 1264
SmlI CTYRAG 4 cut(s) 35, 48, 387, 1298
SmoI CTYRAG 4 cut(s) 35, 48, 387, 1298
SpeI ACTAGT 1 cut(s) 1061
Sse9I AATT 8 cut(s) 130, 246, 271, 294, 373, 575, 580, 1286
SsiI CCGC 4 cut(s) 5, 681, 1033, 1249
SspMI CTAG 3 cut(s) 981, 1062, 1164
StyD4I CCNGG 4 cut(s) 358, 433, 1088, 1236
TaaI ACNGT 7 cut(s) 104, 327, 336, 481, 615, 667, 772
TaiI ACGT 3 cut(s) 602, 849, 953
TaqI TCGA 2 cut(s) 526, 1157
TaqII GACCGA 1 cut(s) 1164
TasI AATT 8 cut(s) 130, 246, 271, 294, 373, 575, 580, 1286
TatI WGTACW 1 cut(s) 741
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 622, 1152
Tru1I TTAA 6 cut(s) 111, 128, 503, 596, 617, 798
Tru9I TTAA 6 cut(s) 111, 128, 503, 596, 617, 798
TscAI CASTG 4 cut(s) 204, 330, 370, 492
TseFI GTSAC 2 cut(s) 195, 1145
TseI GCWGC 9 cut(s) 142, 318, 380, 410, 1115, 1118, 1121, 1133, 1220
Tsp45I GTSAC 2 cut(s) 195, 1145
TspDTI ATGAA 3 cut(s) 588, 741, 1252
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 4 cut(s) 204, 330, 370, 492
XagI CCTNNNNNAGG 1 cut(s) 962
XapI RAATTY 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 939
XspI CTAG 3 cut(s) 981, 1062, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.