Rh5CG528100
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
73877129 .. 73877743
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG528100.1

Sequence Viewer

Length: 306 bp
ATGGTGGAGTTGGAAAAGCAGAGAATGCAGTTTGCTAAGGACTTGGAGGTTCAGAGAATGAGGATGTTCATGGACACACAGGTCCAGCCGGAGCGGATCAAGCACGGCAAGCGACCCGGCTCTAATGGTGAGCCGAATCTGTCAGCTTTCTTCTATAATGGAAAAGATAGCCACGGATTTACAAGGCAGTGTGGTCAATTTGAATGTAATCTCTCGATTAGAGGAATAGCAATTGCAGGCCAGAGAATTGAGAGTGAAGTTGGAGGCCGATCGATTCTGGCCTTCTGGGTAACTGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.58

Weight (kDa)

6.73

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022881)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009150 RLG00000028783
rosa_samantha Rh5CG528100 Rh7CG136900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccBSI CCGCTC 1 cut(s) 94
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 104
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
AlwI GGATC 1 cut(s) 104
AoxI GGCC 3 cut(s) 238, 265, 279
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 121
BcnI CCSGG 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 117
Bsa29I ATCGAT 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 172
BseGI GGATG 1 cut(s) 69
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 3 cut(s) 240, 267, 281
BshVI ATCGAT 1 cut(s) 272
BsiEI CGRYCG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 89, 117
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 3 cut(s) 240, 267, 281
Bsp143I GATC 2 cut(s) 96, 269
BspACI CCGC 1 cut(s) 94
BspANI GGCC 3 cut(s) 240, 267, 281
BspDI ATCGAT 1 cut(s) 272
BspPI GGATC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 2 cut(s) 96, 269
BstAPI GCANNNNNTGC 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 110, 238
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 1 cut(s) 69
BstKTI GATC 2 cut(s) 99, 272
BstMBI GATC 2 cut(s) 96, 269
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 3 cut(s) 25, 100, 109
BstSCI CCNGG 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 272
BsuRI GGCC 3 cut(s) 240, 267, 281
BsuTUI ATCGAT 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 110, 238
Cfr13I GGNCC 1 cut(s) 82
ClaI ATCGAT 1 cut(s) 272
CviAII CATG 1 cut(s) 70
CviJI RGCY 8 cut(s) 88, 120, 133, 146, 171, 240, 267, 281
CviKI_1 RGCY 8 cut(s) 88, 120, 133, 146, 171, 240, 267, 281
DdeI CTNAG 1 cut(s) 36
DpnI GATC 2 cut(s) 98, 271
DpnII GATC 2 cut(s) 96, 269
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 82
FaeI CATG 1 cut(s) 73
FaiI YATR 2 cut(s) 71, 156
FatI CATG 1 cut(s) 69
FokI GGATG 1 cut(s) 76
HaeIII GGCC 3 cut(s) 240, 267, 281
HapII CCGG 2 cut(s) 89, 117
Hin1II CATG 1 cut(s) 73
HinfI GANTC 2 cut(s) 136, 274
HpaII CCGG 2 cut(s) 89, 117
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 28, 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 100, 109
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 1 cut(s) 73
Kzo9I GATC 2 cut(s) 96, 269
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 65, 98, 102, 130, 222, 254, 263, 271
MaeIII GTNAC 1 cut(s) 289
MalI GATC 2 cut(s) 98, 271
MbiI CCGCTC 1 cut(s) 94
MboI GATC 2 cut(s) 96, 269
MboII GAAGA 1 cut(s) 142
MfeI CAATTG 1 cut(s) 231
MluCI AATT 3 cut(s) 197, 231, 246
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 4 cut(s) 40, 54, 215, 257
MspI CCGG 2 cut(s) 89, 117
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 25, 100, 109
NciI CCSGG 1 cut(s) 117
NdeII GATC 2 cut(s) 96, 269
NlaIII CATG 1 cut(s) 73
PctI GAATGC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 136, 274
Ple19I CGATCG 1 cut(s) 272
PspPI GGNCC 1 cut(s) 82
PvuI CGATCG 1 cut(s) 272
Sau3AI GATC 2 cut(s) 96, 269
Sau96I GGNCC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 117
SetI ASST 3 cut(s) 51, 84, 148
SinI GGWCC 1 cut(s) 82
Sse9I AATT 3 cut(s) 197, 231, 246
SsiI CCGC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 115
TaqI TCGA 2 cut(s) 215, 272
TasI AATT 3 cut(s) 197, 231, 246
TfiI GAWTC 2 cut(s) 136, 274
TscAI CASTG 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.