RLG00000009150

Protein of unknown function (DUF3741)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0022881
Physical Location & Seq
Reverse (-)
47562285 .. 47564584
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009150

Sequence Viewer

Length: 453 bp
ATGCTGTATTGGGTTTTGATTTTCACAAAAGATAATGGAAAAGAAAGCCACAGATTTACAAGGCAGTGTGGTCAATTTGAATGCAAGCTCTCGATCAGAGGAATAGCAATTATAGGCCAGAGAATTGAGAGTGAAGTCGGAGGCCAATCAATTCTGGCCTTCTGGTTTGCCCTCAAAGTTTTTACGCTCAGAGAAGTGGCCGGCGCCAAAACCACGTCTACTCTTCAATTCGCTGCTCACAGGCTCAAGTTCTCAAGAAGCTCCAGTGAGAGATTCGCCTCCAAAGAACGAGTTTCCTCAAGAGGAAACAGGCAATTTCAGAAGCAGAAGACATTAGGCTCTGATTCTAGCTCTTGCAGTAGTGGCTCTACAGGGGAAGATCTGGAAAACCTTTTGGACTATCGGTCAAAATGCCCATGGAAAGAAGATTTGAAATATGCAAAAGTAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3741 DUF4378 VARLMGL

Protein Analysis

151

Amino Acids

16.96

Weight (kDa)

9.73

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022881)

Species Orthologous Gene IDs
rosa_laevigata RLG00000009150 RLG00000028783
rosa_samantha Rh5CG528100 Rh7CG136900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 204
AgsI TTSAA 3 cut(s) 80, 227, 433
AhdI GACNNNNNGTC 1 cut(s) 403
AjiI CACGTC 1 cut(s) 216
AluBI AGCT 3 cut(s) 88, 261, 351
AluI AGCT 3 cut(s) 88, 261, 351
AoxI GGCC 4 cut(s) 115, 142, 156, 198
ApeKI GCWGC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 220
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 369
BfoI RGCGCY 1 cut(s) 207
BglII AGATCT 1 cut(s) 379
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmeRI GACNNNNNGTC 1 cut(s) 403
BmgBI CACGTC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 247
BpuEI CTTGAG 3 cut(s) 230, 238, 283
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 416
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 416
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 4 cut(s) 117, 144, 158, 200
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 201
BsmI GAATGC 1 cut(s) 86
BsnI GGCC 4 cut(s) 117, 144, 158, 200
Bsp143I GATC 2 cut(s) 93, 379
Bsp19I CCATGG 1 cut(s) 416
BspANI GGCC 4 cut(s) 117, 144, 158, 200
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 2 cut(s) 93, 379
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 416
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 86, 202
BstDEI CTNAG 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 416
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 2 cut(s) 96, 382
BstMBI GATC 2 cut(s) 93, 379
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 4 cut(s) 117, 144, 158, 200
BtgI CCRYGG 1 cut(s) 416
BtrI CACGTC 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 71, 271
Cac8I GCNNGC 2 cut(s) 86, 202
CfoI GCGC 1 cut(s) 206
Cfr10I RCCGGY 1 cut(s) 200
CviAII CATG 1 cut(s) 417
DdeI CTNAG 1 cut(s) 188
DinI GGCGCC 1 cut(s) 205
DpnI GATC 2 cut(s) 95, 381
DpnII GATC 2 cut(s) 93, 379
DriI GACNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 416
EgeI GGCGCC 1 cut(s) 205
EheI GGCGCC 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 1 cut(s) 420
FaiI YATR 3 cut(s) 113, 418, 438
FatI CATG 1 cut(s) 416
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 207
HaeIII GGCC 4 cut(s) 117, 144, 158, 200
HapII CCGG 1 cut(s) 201
HhaI GCGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 1 cut(s) 420
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HinfI GANTC 2 cut(s) 273, 344
HpaII CCGG 1 cut(s) 201
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 5 cut(s) 98, 140, 191, 321, 343
Hpy188III TCNNGA 4 cut(s) 91, 255, 300, 383
Hpy8I GTNNAC 1 cut(s) 219
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 3 cut(s) 84, 357, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 215
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 1 cut(s) 420
HspAI GCGC 1 cut(s) 204
KasI GGCGCC 1 cut(s) 203
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 2 cut(s) 93, 379
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 9 cut(s) 131, 140, 148, 214, 226, 277, 295, 357, 368
Lsp1109I GCAGC 1 cut(s) 220
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 215
MalI GATC 2 cut(s) 95, 381
MboI GATC 2 cut(s) 93, 379
MboII GAAGA 4 cut(s) 215, 340, 389, 437
MflI RGATCY 1 cut(s) 379
MluCI AATT 6 cut(s) 74, 108, 123, 150, 227, 314
Mly113I GGCGCC 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 6 cut(s) 92, 134, 182, 289, 296, 307
MroNI GCCGGC 1 cut(s) 200
MspI CCGG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 363
NaeI GCCGGC 1 cut(s) 202
NarI GGCGCC 1 cut(s) 204
NcoI CCATGG 1 cut(s) 416
NdeII GATC 2 cut(s) 93, 379
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 420
NlaIV GGNNCC 1 cut(s) 205
PctI GAATGC 1 cut(s) 86
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 273, 344
PkrI GCNGC 1 cut(s) 235
PluTI GGCGCC 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 205
PsuI RGATCY 1 cut(s) 379
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 93, 379
SetI ASST 5 cut(s) 90, 218, 263, 353, 393
SfcI CTRYAG 1 cut(s) 369
SfoI GGCGCC 1 cut(s) 205
SmlI CTYRAG 3 cut(s) 245, 253, 298
SmoI CTYRAG 3 cut(s) 245, 253, 298
Sse9I AATT 6 cut(s) 74, 108, 123, 150, 227, 314
SspDI GGCGCC 1 cut(s) 203
SspMI CTAG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 416
TaiI ACGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 92
TaqII GACCGA 1 cut(s) 393
TasI AATT 6 cut(s) 74, 108, 123, 150, 227, 314
TfiI GAWTC 2 cut(s) 273, 344
TscAI CASTG 2 cut(s) 71, 271
TseI GCWGC 1 cut(s) 233
TspRI CASTG 2 cut(s) 71, 271
XmiI GTMKAC 1 cut(s) 218
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.