No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000018573 |
| rosa_multiflora | Rmu_sc0020230.1_g000001 |
| rosa_roxburghii | Rroxscaffold_165G00437070 Rroxscaffold_3G00235940 Rroxscaffold_6G00425270 |
| rosa_samantha | Rh7DG350900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 393 |
| AccII | CGCG | 1 cut(s) | 161 |
| AciI | CCGC | 4 cut(s) | 76, 122, 159, 161 |
| AfaI | GTAC | 1 cut(s) | 478 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 393, 449 |
| AgsI | TTSAA | 6 cut(s) | 212, 279, 311, 323, 367, 423 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 166, 198 |
| AluBI | AGCT | 1 cut(s) | 494 |
| AluI | AGCT | 1 cut(s) | 494 |
| Alw21I | GWGCWC | 1 cut(s) | 509 |
| Alw26I | GTCTC | 2 cut(s) | 112, 236 |
| AoxI | GGCC | 4 cut(s) | 34, 242, 357, 398 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 318 |
| AspLEI | GCGC | 1 cut(s) | 49 |
| AsuHPI | GGTGA | 2 cut(s) | 180, 537 |
| BbsI | GAAGAC | 2 cut(s) | 279, 355 |
| Bbv12I | GWGCWC | 1 cut(s) | 509 |
| BccI | CCATC | 2 cut(s) | 460, 556 |
| BceAI | ACGGC | 1 cut(s) | 344 |
| BciVI | GTATCC | 1 cut(s) | 394 |
| BcoDI | GTCTC | 2 cut(s) | 112, 236 |
| BfuI | GTATCC | 1 cut(s) | 394 |
| BisI | GCNGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 1 cut(s) | 163 |
| BmiI | GGNNCC | 3 cut(s) | 63, 151, 454 |
| BmsI | GCATC | 1 cut(s) | 566 |
| BpiI | GAAGAC | 2 cut(s) | 279, 355 |
| BsaJI | CCNNGG | 2 cut(s) | 57, 159 |
| BsaWI | WCCGGW | 1 cut(s) | 449 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 525, 555 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 393, 449 |
| Bse118I | RCCGGY | 3 cut(s) | 32, 146, 240 |
| Bse3DI | GCAATG | 1 cut(s) | 429 |
| BseDI | CCNNGG | 2 cut(s) | 57, 159 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 393, 449 |
| BseMI | GCAATG | 1 cut(s) | 429 |
| BseMII | CTCAG | 1 cut(s) | 599 |
| BseRI | GAGGAG | 1 cut(s) | 142 |
| Bsh1236I | CGCG | 1 cut(s) | 161 |
| Bsh1285I | CGRYCG | 1 cut(s) | 147 |
| BshFI | GGCC | 4 cut(s) | 36, 244, 359, 400 |
| BsiEI | CGRYCG | 1 cut(s) | 147 |
| BsiHKAI | GWGCWC | 1 cut(s) | 509 |
| BsiSI | CCGG | 4 cut(s) | 33, 147, 241, 450 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 393, 449 |
| BsmAI | GTCTC | 2 cut(s) | 112, 236 |
| BsmBI | CGTCTC | 1 cut(s) | 112 |
| BsnI | GGCC | 4 cut(s) | 36, 244, 359, 400 |
| Bsp1286I | GDGCHC | 1 cut(s) | 509 |
| BspACI | CCGC | 4 cut(s) | 76, 122, 159, 161 |
| BspANI | GGCC | 4 cut(s) | 36, 244, 359, 400 |
| BspCNI | CTCAG | 1 cut(s) | 598 |
| BspFNI | CGCG | 1 cut(s) | 161 |
| BspLI | GGNNCC | 3 cut(s) | 63, 151, 454 |
| BspQI | GCTCTTC | 1 cut(s) | 171 |
| BsrDI | GCAATG | 1 cut(s) | 429 |
| BsrFI | RCCGGY | 3 cut(s) | 32, 146, 240 |
| BssAI | RCCGGY | 3 cut(s) | 32, 146, 240 |
| BssECI | CCNNGG | 2 cut(s) | 57, 159 |
| Bst4CI | ACNGT | 2 cut(s) | 192, 541 |
| Bst6I | CTCTTC | 2 cut(s) | 58, 171 |
| BstC8I | GCNNGC | 1 cut(s) | 242 |
| BstDEI | CTNAG | 1 cut(s) | 585 |
| BstDSI | CCRYGG | 1 cut(s) | 159 |
| BstFNI | CGCG | 1 cut(s) | 161 |
| BstHHI | GCGC | 1 cut(s) | 49 |
| BstMAI | GTCTC | 2 cut(s) | 112, 236 |
| BstMCI | CGRYCG | 1 cut(s) | 147 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 491 |
| BstUI | CGCG | 1 cut(s) | 161 |
| BstV2I | GAAGAC | 2 cut(s) | 279, 355 |
| BsuI | GTATCC | 1 cut(s) | 394 |
| BsuRI | GGCC | 4 cut(s) | 36, 244, 359, 400 |
| BtgI | CCRYGG | 1 cut(s) | 159 |
| BtsI | GCAGTG | 1 cut(s) | 434 |
| BtsIMutI | CAGTG | 2 cut(s) | 434, 546 |
| Cac8I | GCNNGC | 1 cut(s) | 242 |
| CfoI | GCGC | 1 cut(s) | 49 |
| Cfr10I | RCCGGY | 3 cut(s) | 32, 146, 240 |
| Cfr42I | CCGCGG | 1 cut(s) | 162 |
| Csp6I | GTAC | 1 cut(s) | 477 |
| CviQI | GTAC | 1 cut(s) | 477 |
| DdeI | CTNAG | 1 cut(s) | 585 |
| DraI | TTTAAA | 1 cut(s) | 412 |
| Eam1104I | CTCTTC | 2 cut(s) | 58, 171 |
| EarI | CTCTTC | 2 cut(s) | 58, 171 |
| Esp3I | CGTCTC | 1 cut(s) | 112 |
| FaiI | YATR | 3 cut(s) | 394, 462, 464 |
| FauNDI | CATATG | 1 cut(s) | 462 |
| Fnu4HI | GCNGC | 1 cut(s) | 162 |
| Fsp4HI | GCNGC | 1 cut(s) | 162 |
| GlaI | GCGC | 1 cut(s) | 48 |
| GluI | GCNGC | 1 cut(s) | 162 |
| HaeIII | GGCC | 4 cut(s) | 36, 244, 359, 400 |
| HapII | CCGG | 4 cut(s) | 33, 147, 241, 450 |
| HhaI | GCGC | 1 cut(s) | 49 |
| Hin6I | GCGC | 1 cut(s) | 47 |
| HinP1I | GCGC | 1 cut(s) | 47 |
| HpaII | CCGG | 4 cut(s) | 33, 147, 241, 450 |
| HphI | GGTGA | 2 cut(s) | 180, 537 |
| Hpy188I | TCNGA | 3 cut(s) | 141, 204, 491 |
| Hpy188III | TCNNGA | 3 cut(s) | 256, 338, 387 |
| HpyAV | CCTTC | 3 cut(s) | 138, 192, 285 |
| HpyCH4III | ACNGT | 2 cut(s) | 192, 541 |
| HpyCH4V | TGCA | 2 cut(s) | 429, 434 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 491 |
| HpyF3I | CTNAG | 1 cut(s) | 585 |
| HspAI | GCGC | 1 cut(s) | 47 |
| KroI | GCCGGC | 1 cut(s) | 240 |
| KroNI | GCCGGC | 1 cut(s) | 242 |
| KspI | CCGCGG | 1 cut(s) | 162 |
| LguI | GCTCTTC | 1 cut(s) | 171 |
| LmnI | GCTCC | 1 cut(s) | 155 |
| LpnPI | CCDG | 8 cut(s) | 46, 160, 203, 254, 341, 400, 456, 463 |
| LweI | GCATC | 1 cut(s) | 566 |
| MaeIII | GTNAC | 2 cut(s) | 253, 543 |
| MboII | GAAGA | 8 cut(s) | 45, 94, 158, 177, 188, 279, 323, 355 |
| MhlI | GDGCHC | 1 cut(s) | 509 |
| MluCI | AATT | 1 cut(s) | 212 |
| MmeI | TCCRAC | 1 cut(s) | 197 |
| MroNI | GCCGGC | 1 cut(s) | 240 |
| MroXI | GAANNNNTTC | 1 cut(s) | 318 |
| MseI | TTAA | 1 cut(s) | 411 |
| MspA1I | CMGCKG | 1 cut(s) | 161 |
| MspI | CCGG | 4 cut(s) | 33, 147, 241, 450 |
| MvnI | CGCG | 1 cut(s) | 161 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 491 |
| NaeI | GCCGGC | 1 cut(s) | 242 |
| NdeI | CATATG | 1 cut(s) | 462 |
| NgoMIV | GCCGGC | 1 cut(s) | 240 |
| NlaIV | GGNNCC | 3 cut(s) | 63, 151, 454 |
| NmuCI | GTSAC | 2 cut(s) | 253, 543 |
| PciSI | GCTCTTC | 1 cut(s) | 171 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 65 |
| PdiI | GCCGGC | 1 cut(s) | 242 |
| PdmI | GAANNNNTTC | 1 cut(s) | 318 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 393 |
| PkrI | GCNGC | 1 cut(s) | 163 |
| PspN4I | GGNNCC | 3 cut(s) | 63, 151, 454 |
| RsaI | GTAC | 1 cut(s) | 478 |
| RsaNI | GTAC | 1 cut(s) | 477 |
| SacII | CCGCGG | 1 cut(s) | 162 |
| SapI | GCTCTTC | 1 cut(s) | 171 |
| SaqAI | TTAA | 1 cut(s) | 411 |
| SatI | GCNGC | 1 cut(s) | 162 |
| SduI | GDGCHC | 1 cut(s) | 509 |
| SetI | ASST | 5 cut(s) | 184, 222, 277, 328, 496 |
| SfaNI | GCATC | 1 cut(s) | 566 |
| Sfr303I | CCGCGG | 1 cut(s) | 162 |
| SgrBI | CCGCGG | 1 cut(s) | 162 |
| Sse9I | AATT | 1 cut(s) | 212 |
| SsiI | CCGC | 4 cut(s) | 76, 122, 159, 161 |
| TaaI | ACNGT | 2 cut(s) | 192, 541 |
| TasI | AATT | 1 cut(s) | 212 |
| TauI | GCSGC | 1 cut(s) | 164 |
| Tru1I | TTAA | 1 cut(s) | 411 |
| Tru9I | TTAA | 1 cut(s) | 411 |
| TscAI | CASTG | 2 cut(s) | 441, 546 |
| TseFI | GTSAC | 2 cut(s) | 253, 543 |
| Tsp45I | GTSAC | 2 cut(s) | 253, 543 |
| TspDTI | ATGAA | 1 cut(s) | 188 |
| TspGWI | ACGGA | 1 cut(s) | 57 |
| TspRI | CASTG | 2 cut(s) | 441, 546 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 393 |
| XmnI | GAANNNNTTC | 1 cut(s) | 318 |