Ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000018573 |
| rosa_multiflora | Rmu_sc0020230.1_g000001 |
| rosa_roxburghii | Rroxscaffold_165G00437070 Rroxscaffold_3G00235940 Rroxscaffold_6G00425270 |
| rosa_samantha | Rh7DG350900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 108 |
| AccI | GTMKAC | 1 cut(s) | 450 |
| AciI | CCGC | 3 cut(s) | 486, 489, 517 |
| AcuI | CTGAAG | 1 cut(s) | 129 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 108, 227, 244 |
| AflIII | ACRYGT | 1 cut(s) | 347 |
| AgsI | TTSAA | 4 cut(s) | 50, 316, 362, 440 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 6 cut(s) | 90, 143, 196, 227, 302, 528 |
| AluI | AGCT | 6 cut(s) | 90, 143, 196, 227, 302, 528 |
| AoxI | GGCC | 1 cut(s) | 20 |
| ApeKI | GCWGC | 1 cut(s) | 261 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 34 |
| AsuII | TTCGAA | 2 cut(s) | 28, 268 |
| BanII | GRGCYC | 1 cut(s) | 505 |
| BbsI | GAAGAC | 1 cut(s) | 75 |
| BbvI | GCAGC | 1 cut(s) | 248 |
| BfaI | CTAG | 3 cut(s) | 65, 87, 222 |
| BfmI | CTRYAG | 1 cut(s) | 138 |
| BisI | GCNGC | 3 cut(s) | 262, 487, 490 |
| BlsI | GCNGC | 3 cut(s) | 263, 488, 491 |
| BpiI | GAAGAC | 1 cut(s) | 75 |
| Bpu14I | TTCGAA | 2 cut(s) | 28, 268 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 108, 227, 244 |
| Bse1I | ACTGG | 1 cut(s) | 130 |
| BseGI | GGATG | 2 cut(s) | 415, 468 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 108, 227, 244 |
| BseNI | ACTGG | 1 cut(s) | 130 |
| BseRI | GAGGAG | 1 cut(s) | 353 |
| BseXI | GCAGC | 1 cut(s) | 248 |
| BshFI | GGCC | 1 cut(s) | 22 |
| BslFI | GGGAC | 1 cut(s) | 358 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 108, 227, 244 |
| BsmFI | GGGAC | 1 cut(s) | 358 |
| BsmI | GAATGC | 1 cut(s) | 264 |
| BsnI | GGCC | 1 cut(s) | 22 |
| Bsp119I | TTCGAA | 2 cut(s) | 28, 268 |
| Bsp1286I | GDGCHC | 1 cut(s) | 505 |
| BspACI | CCGC | 3 cut(s) | 486, 489, 517 |
| BspANI | GGCC | 1 cut(s) | 22 |
| BspT104I | TTCGAA | 2 cut(s) | 28, 268 |
| BsrI | ACTGG | 1 cut(s) | 130 |
| Bst6I | CTCTTC | 1 cut(s) | 30 |
| BstBI | TTCGAA | 2 cut(s) | 28, 268 |
| BstC8I | GCNNGC | 1 cut(s) | 20 |
| BstDEI | CTNAG | 1 cut(s) | 276 |
| BstEII | GGTNACC | 1 cut(s) | 111 |
| BstF5I | GGATG | 2 cut(s) | 415, 468 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 202 |
| BstNSI | RCATGY | 1 cut(s) | 351 |
| BstPI | GGTNACC | 1 cut(s) | 111 |
| BstSFI | CTRYAG | 1 cut(s) | 138 |
| BstV1I | GCAGC | 1 cut(s) | 248 |
| BstV2I | GAAGAC | 1 cut(s) | 75 |
| BsuRI | GGCC | 1 cut(s) | 22 |
| BtsCI | GGATG | 2 cut(s) | 415, 468 |
| Cac8I | GCNNGC | 1 cut(s) | 20 |
| CviAII | CATG | 3 cut(s) | 254, 328, 348 |
| DdeI | CTNAG | 1 cut(s) | 276 |
| Eam1104I | CTCTTC | 1 cut(s) | 30 |
| EarI | CTCTTC | 1 cut(s) | 30 |
| Eco24I | GRGCYC | 1 cut(s) | 505 |
| Eco57I | CTGAAG | 1 cut(s) | 129 |
| Eco91I | GGTNACC | 1 cut(s) | 111 |
| EcoO65I | GGTNACC | 1 cut(s) | 111 |
| EcoT38I | GRGCYC | 1 cut(s) | 505 |
| FaeI | CATG | 3 cut(s) | 257, 331, 351 |
| FaiI | YATR | 6 cut(s) | 107, 255, 329, 349, 507, 509 |
| FaqI | GGGAC | 1 cut(s) | 358 |
| FatI | CATG | 3 cut(s) | 253, 327, 347 |
| FauNDI | CATATG | 1 cut(s) | 507 |
| FblI | GTMKAC | 1 cut(s) | 450 |
| Fnu4HI | GCNGC | 3 cut(s) | 262, 487, 490 |
| FokI | GGATG | 2 cut(s) | 422, 475 |
| FriOI | GRGCYC | 1 cut(s) | 505 |
| Fsp4HI | GCNGC | 3 cut(s) | 262, 487, 490 |
| FspBI | CTAG | 3 cut(s) | 65, 87, 222 |
| GluI | GCNGC | 3 cut(s) | 262, 487, 490 |
| HaeIII | GGCC | 1 cut(s) | 22 |
| Hin1II | CATG | 3 cut(s) | 257, 331, 351 |
| HincII | GTYRAC | 1 cut(s) | 451 |
| HindII | GTYRAC | 1 cut(s) | 451 |
| HindIII | AAGCTT | 1 cut(s) | 194 |
| HinfI | GANTC | 3 cut(s) | 30, 98, 425 |
| Hpy166II | GTNNAC | 2 cut(s) | 58, 451 |
| Hpy188III | TCNNGA | 2 cut(s) | 47, 65 |
| Hpy8I | GTNNAC | 2 cut(s) | 58, 451 |
| Hpy99I | CGWCG | 1 cut(s) | 455 |
| HpyAV | CCTTC | 4 cut(s) | 281, 290, 310, 516 |
| HpyCH4V | TGCA | 1 cut(s) | 264 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 202 |
| HpyF3I | CTNAG | 1 cut(s) | 276 |
| Hsp92II | CATG | 3 cut(s) | 257, 331, 351 |
| LmnI | GCTCC | 2 cut(s) | 299, 525 |
| LpnPI | CCDG | 6 cut(s) | 4, 111, 187, 192, 213, 514 |
| Lsp1109I | GCAGC | 1 cut(s) | 248 |
| MaeI | CTAG | 3 cut(s) | 65, 87, 222 |
| MaeIII | GTNAC | 1 cut(s) | 111 |
| MboII | GAAGA | 4 cut(s) | 17, 80, 388, 391 |
| MhlI | GDGCHC | 1 cut(s) | 505 |
| MluCI | AATT | 2 cut(s) | 82, 481 |
| MnlI | CCTC | 6 cut(s) | 33, 83, 127, 302, 331, 334 |
| MroXI | GAANNNNTTC | 1 cut(s) | 34 |
| MseI | TTAA | 2 cut(s) | 207, 471 |
| MspA1I | CMGCKG | 1 cut(s) | 517 |
| Mva1269I | GAATGC | 1 cut(s) | 264 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 202 |
| NdeI | CATATG | 1 cut(s) | 507 |
| NlaIII | CATG | 3 cut(s) | 257, 331, 351 |
| NspI | RCATGY | 1 cut(s) | 351 |
| NspV | TTCGAA | 2 cut(s) | 28, 268 |
| PciI | ACATGT | 1 cut(s) | 347 |
| PctI | GAATGC | 1 cut(s) | 264 |
| PdmI | GAANNNNTTC | 1 cut(s) | 34 |
| PfeI | GAWTC | 3 cut(s) | 30, 98, 425 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 108 |
| PkrI | GCNGC | 3 cut(s) | 263, 488, 491 |
| PscI | ACATGT | 1 cut(s) | 347 |
| PspEI | GGTNACC | 1 cut(s) | 111 |
| SalI | GTCGAC | 1 cut(s) | 449 |
| SaqAI | TTAA | 2 cut(s) | 207, 471 |
| SatI | GCNGC | 3 cut(s) | 262, 487, 490 |
| SduI | GDGCHC | 1 cut(s) | 505 |
| SetI | ASST | 8 cut(s) | 75, 92, 145, 198, 229, 304, 499, 530 |
| SfcI | CTRYAG | 1 cut(s) | 138 |
| SfuI | TTCGAA | 2 cut(s) | 28, 268 |
| Sse9I | AATT | 2 cut(s) | 82, 481 |
| SsiI | CCGC | 3 cut(s) | 486, 489, 517 |
| SspMI | CTAG | 3 cut(s) | 65, 87, 222 |
| TaqI | TCGA | 3 cut(s) | 28, 268, 450 |
| TasI | AATT | 2 cut(s) | 82, 481 |
| TauI | GCSGC | 2 cut(s) | 489, 492 |
| TfiI | GAWTC | 3 cut(s) | 30, 98, 425 |
| Tru1I | TTAA | 2 cut(s) | 207, 471 |
| Tru9I | TTAA | 2 cut(s) | 207, 471 |
| TseI | GCWGC | 1 cut(s) | 261 |
| TspDTI | ATGAA | 3 cut(s) | 242, 426, 524 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 108 |
| XbaI | TCTAGA | 1 cut(s) | 64 |
| XceI | RCATGY | 1 cut(s) | 351 |
| XmiI | GTMKAC | 1 cut(s) | 450 |
| XmnI | GAANNNNTTC | 1 cut(s) | 34 |
| XspI | CTAG | 3 cut(s) | 65, 87, 222 |