Rroxscaffold_6G00395710
MYB Family

cell division cycle 5-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
16851589 .. 16852521
933 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00395710.1

Sequence Viewer

Length: 342 bp
ATGATAAGGGAGGAGGTTCAGTATCTTCGTCGCAATGCTTATGGTAGAACAAGTATTGCGGGAAATGAGGAGAAACTTGAGGCTTTGCAGAAGGAGTTTGAGAATGTCAAGAAGAAGTTGGATGATGATCTTGGGAAGGCAGCAAGACTTGAAGAAAAGTTCAAGCTATTGGGACGCCATTTGAAATCTTCATTGACTCTGTTGGCTGGTGGAGTTATACCTGACCAAGTTCCTGGAATACTAGTGGAGGAAAGAGGTGTTCATTTGGAGGTACAAGCAATGAGAGAACAACATGAGGCTGATATTGAAACGATCGAAGGAGAGCCAAGAACAGGAAGATAA

Protein Analysis

113

Amino Acids

12.83

Weight (kDa)

5.68

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020071)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 4 cut(s) 152, 163, 184, 308
AhlI ACTAGT 1 cut(s) 241
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 234
BcuI ACTAGT 1 cut(s) 241
BfaI CTAG 1 cut(s) 242
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse3DI GCAATG 2 cut(s) 40, 285
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 127
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMI GCAATG 2 cut(s) 40, 285
BseRI GAGGAG 2 cut(s) 26, 83
BseXI GCAGC 1 cut(s) 152
Bsh1285I CGRYCG 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 127, 312
BspACI CCGC 1 cut(s) 59
BsrDI GCAATG 2 cut(s) 40, 285
BssMI GATC 2 cut(s) 127, 312
BssNI GRCGYC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 175
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 2 cut(s) 130, 315
BstMBI GATC 2 cut(s) 127, 312
BstMCI CGRYCG 1 cut(s) 315
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 152
BstXI CCANNNNNNTGG 1 cut(s) 233
BtsCI GGATG 1 cut(s) 127
CseI GACGC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 272
CviAII CATG 1 cut(s) 293
CviJI RGCY 5 cut(s) 83, 166, 206, 299, 325
CviKI_1 RGCY 5 cut(s) 83, 166, 206, 299, 325
CviQI GTAC 1 cut(s) 272
DpnI GATC 2 cut(s) 129, 314
DpnII GATC 2 cut(s) 127, 312
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 296
FaiI YATR 3 cut(s) 42, 218, 294
FaqI GGGAC 1 cut(s) 186
FatI CATG 1 cut(s) 292
FauI CCCGC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 141
HgaI GACGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 1 cut(s) 296
HinfI GANTC 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 3 cut(s) 85, 130, 311
HpyCH4V TGCA 1 cut(s) 88
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 2 cut(s) 127, 312
LpnPI CCDG 5 cut(s) 192, 219, 234, 246, 318
Lsp1109I GCAGC 1 cut(s) 152
MaeI CTAG 1 cut(s) 242
MalI GATC 2 cut(s) 129, 314
MboI GATC 2 cut(s) 127, 312
MboII GAAGA 4 cut(s) 17, 124, 164, 180
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 8 cut(s) 4, 7, 61, 73, 241, 248, 262, 289
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NdeII GATC 2 cut(s) 127, 312
NlaIII CATG 1 cut(s) 296
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 1 cut(s) 142
Ple19I CGATCG 1 cut(s) 315
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PvuI CGATCG 1 cut(s) 315
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 2 cut(s) 127, 312
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 234
SetI ASST 5 cut(s) 18, 168, 223, 259, 273
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 241
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 232
TaqI TCGA 1 cut(s) 315
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 180, 251
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.