Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0020825

Physical Location & Seq

Genomic Coordinates Reverse (-)

54795716 .. 54796078

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG398900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGAAGGTCACCTTGCTGTGAGAAAGCTCACACCAACAAAGGGGCTTGGACCAAAGAAGAAGACCAACGCCTCATCGACTACATCCGCATCCATGGCGAAGGTTGCTGGCGCTCCCTCCCTAAACAAGCTGGTAATTCTTTCACACATAATCTTCGAAACCCGTCATTTATTTTCCGTGTTTGTGTTTTGTTCGGTTGCTTAACAGAGAATTTTCACGTGGGAACAGGGTTGCTTAGATGCGGCAAGAGCTGCAGGCTCAGGTGGATAAACTACCTCCGACCTGATCTCAAGCGTGGGAATTTCACCGAAGAAGAAGACGAGCTCATTATCAAGCTCCATAGCTTACTCGGAAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

120

Amino Acids

13.89

Weight (kDa)

9.1

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 46	2.6e-09	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 108	1.2e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16720 AT4G34990
prunus_persica	Prupe.6G270000_v2.0.a1
rosa_multiflora	Rmu_sc0004237.1_g000002
rosa_samantha	Rh7DG398900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	88, 243
AcsI	RAATTY	2 cut(s)	211, 301
AcvI	CACGTG	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	42
AluBI	AGCT	6 cut(s)	29, 131, 252, 325, 337, 345
AluI	AGCT	6 cut(s)	29, 131, 252, 325, 337, 345
Alw21I	GWGCWC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	252
ApoI	RAATTY	2 cut(s)	211, 301
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	3, 298
AsuII	TTCGAA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	327
BbrPI	CACGTG	1 cut(s)	220
BbsI	GAAGAC	2 cut(s)	69, 324
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	2 cut(s)	244, 253
BlsI	GCNGC	2 cut(s)	245, 254
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	51
BmsI	GCATC	2 cut(s)	99, 230
BpiI	GAAGAC	2 cut(s)	69, 324
Bpu10I	CCTNAGC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	2 cut(s)	84, 90
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	2 cut(s)	88, 243
BspCNI	CTCAG	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	110, 257
BstDEI	CTNAG	2 cut(s)	236, 260
BstDSI	CCRYGG	1 cut(s)	94
BstEII	GGTNACC	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	84, 90
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 105, 249, 252
BstPI	GGTNACC	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	2 cut(s)	69, 324
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	84, 90
Cac8I	GCNNGC	2 cut(s)	110, 257
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	51
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	8 cut(s)	29, 47, 131, 252, 259, 325, 337, 345
CviKI_1	RGCY	8 cut(s)	29, 47, 131, 252, 259, 325, 337, 345
DdeI	CTNAG	2 cut(s)	236, 260
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	325
Eco72I	CACGTG	1 cut(s)	220
Eco91I	GGTNACC	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	98
FaiI	YATR	3 cut(s)	96, 150, 342
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	244, 253
FokI	GGATG	2 cut(s)	71, 77
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	244, 253
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	244, 253
HaeII	RGCGCY	1 cut(s)	115
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HphI	GGTGA	2 cut(s)	3, 298
Hpy188I	TCNGA	2 cut(s)	281, 353
HpyAV	CCTTC	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 105, 249, 252
HpyF3I	CTNAG	2 cut(s)	236, 260
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	98
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	119, 342
LpnPI	CCDG	6 cut(s)	94, 117, 213, 241, 247, 297
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	2 cut(s)	99, 230
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	6 cut(s)	71, 74, 146, 323, 326, 329
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	3 cut(s)	136, 211, 301
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	3 cut(s)	83, 128, 287
MseI	TTAA	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	96, 105, 249, 252
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	98
NmuCI	GTSAC	1 cut(s)	9
NspV	TTCGAA	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	245, 254
PmaCI	CACGTG	1 cut(s)	220
PmlI	CACGTG	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	327
PspCI	CACGTG	1 cut(s)	220
PspEI	GGTNACC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	2 cut(s)	244, 253
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	327
SfaNI	GCATC	2 cut(s)	99, 230
SfcI	CTRYAG	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	3 cut(s)	136, 211, 301
SsiI	CCGC	2 cut(s)	88, 243
SstI	GAGCTC	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	78, 157
TasI	AATT	3 cut(s)	136, 211, 301
TauI	GCSGC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	1 cut(s)	252
Tsp45I	GTSAC	1 cut(s)	9
TspGWI	ACGGA	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	2 cut(s)	211, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.