Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020825

Physical Location & Seq

Genomic Coordinates Reverse (-)

7255473 .. 7256831

Gene Structure 1359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGAAGATCTCCTTGCTGCGAGAAAGAACACATGAACAAAGGTGCTTGGACTAAAGAAGAAGATGAGAGACTAGTCTCTTACATCAAGTCTCACGGTGAAGGTTGTTGGCGATCTCTTCCTAGAGCCGCTGGTCTCCTTCGCTGCGGTAAAAGCTGCCGTCTTCGGTGGATTAACTATCTCCGACCTGATCTCAAAAGAGGAAACTTTACACATGATGAAGATGAACTTATCATCAAGCTTCATAGCCTCCTAGGCAACAAGTGGTCTTTGATTGCGGCGAGATTACCTGGAAGAACAGATAACGAGATCAAGAACTACTGGAACACACATATAAAGAGGAAGCTTTTGAGCAAAGGGATTGATCCAGCCACTCATAGAGGGATCAACGAGGCAAAAATTTCTGATTTGAAGAAAACAAAGGACCAAATTGTAAAAGATGTTTCTTTTGTGACAAAGTTTGAGGAAACAGACAAGTCTGGGGACCAGAAGCAAAATAAGTATATTCGAAATGGGTTAGTTTGCAAAGAAGAGAGAGTTGTTGTTGAAGAAAAAATAGGCCCAGATTTGAATCTTGAGCTTAGGATCAGTCCACCATGGCAAAACCAGAGAGAAATATCTACTTGCACTGCGTCCCGTTTTTACATGGAAAACGACATGGAGTGTAGTAGTGAAACTGTGAAATGTCAAACAGAGAATAGTAGCAGCATTAGCTATTCTTCTATTGATATTAGTAGTAGTAACGTTGGTTATGACTTCTTGGGTTTGAAGACAAGAATTTTGGATTTTCGAAGCTTGGAAATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0046686 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900376 GO:1900377 GO:1900384 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

269

Amino Acids

31.01

Weight (kDa)

8.86

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 71	4.7e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	9.7e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 116	5.8e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16720 AT4G34990
prunus_persica	Prupe.6G270000_v2.0.a1
rosa_multiflora	Rmu_sc0004237.1_g000002
rosa_samantha	Rh7DG398900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	129, 147, 278
AclI	AACGTT	1 cut(s)	744
AclWI	GGATC	3 cut(s)	359, 392, 593
AcsI	RAATTY	2 cut(s)	399, 777
AgsI	TTSAA	4 cut(s)	412, 548, 571, 769
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	6 cut(s)	156, 241, 346, 580, 714, 795
AluI	AGCT	6 cut(s)	156, 241, 346, 580, 714, 795
Alw26I	GTCTC	4 cut(s)	64, 82, 96, 140
AlwI	GGATC	3 cut(s)	359, 392, 593
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	4 cut(s)	18, 144, 156, 705
ApoI	RAATTY	2 cut(s)	399, 777
ArsI	GACNNNNNNTTYG	2 cut(s)	763, 795
AspA2I	CCTAGG	1 cut(s)	253
AspS9I	GGNCC	3 cut(s)	424, 484, 560
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	2 cut(s)	508, 790
AvaII	GGWCC	2 cut(s)	424, 484
AvrII	CCTAGG	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	155, 776
BbvI	GCAGC	4 cut(s)	5, 131, 143, 717
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	4 cut(s)	64, 82, 96, 140
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	3 cut(s)	74, 123, 254
BglI	GCCNNNNNGGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	6 cut(s)	19, 129, 145, 157, 279, 706
BlnI	CCTAGG	1 cut(s)	253
BlsI	GCNGC	6 cut(s)	20, 130, 146, 158, 280, 707
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	424, 484
BmgT120I	GGNCC	3 cut(s)	424, 484, 560
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	155, 776
Bpu10I	CCTNAGC	1 cut(s)	581
Bpu14I	TTCGAA	2 cut(s)	508, 790
BpuEI	CTTGAG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	253, 596
Bse1I	ACTGG	1 cut(s)	326
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	253, 596
BseJI	GATNNNNATC	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	5, 131, 143, 717
BshFI	GGCC	1 cut(s)	561
BslFI	GGGAC	2 cut(s)	497, 619
BsmAI	GTCTC	4 cut(s)	64, 82, 96, 140
BsmFI	GGGAC	2 cut(s)	497, 619
BsnI	GGCC	1 cut(s)	561
Bso31I	GGTCTC	1 cut(s)	140
Bsp119I	TTCGAA	2 cut(s)	508, 790
Bsp143I	GATC	7 cut(s)	8, 113, 190, 309, 364, 384, 585
Bsp19I	CCATGG	1 cut(s)	596
BspACI	CCGC	3 cut(s)	129, 147, 278
BspANI	GGCC	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	485
BspPI	GGATC	3 cut(s)	359, 392, 593
BspT104I	TTCGAA	2 cut(s)	508, 790
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	253, 596
BssMI	GATC	7 cut(s)	8, 113, 190, 309, 364, 384, 585
BssT1I	CCWWGG	2 cut(s)	253, 596
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	98, 679
Bst6I	CTCTTC	2 cut(s)	123, 525
BstBI	TTCGAA	2 cut(s)	508, 790
BstDEI	CTNAG	1 cut(s)	581
BstDSI	CCRYGG	1 cut(s)	596
BstKTI	GATC	7 cut(s)	11, 116, 193, 312, 367, 387, 588
BstMAI	GTCTC	4 cut(s)	64, 82, 96, 140
BstMBI	GATC	7 cut(s)	8, 113, 190, 309, 364, 384, 585
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 255, 711
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	4 cut(s)	5, 131, 143, 717
BstV2I	GAAGAC	2 cut(s)	155, 776
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	596
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	1 cut(s)	627
Cfr13I	GGNCC	3 cut(s)	424, 484, 560
CseI	GACGC	1 cut(s)	621
CviAII	CATG	5 cut(s)	34, 215, 597, 646, 658
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	7 cut(s)	10, 115, 192, 311, 366, 386, 587
DpnII	GATC	7 cut(s)	8, 113, 190, 309, 364, 384, 585
Eam1104I	CTCTTC	2 cut(s)	123, 525
EarI	CTCTTC	2 cut(s)	123, 525
Eco130I	CCWWGG	2 cut(s)	253, 596
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	424, 484
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	253, 596
ErhI	CCWWGG	2 cut(s)	253, 596
FaeI	CATG	5 cut(s)	37, 218, 600, 649, 661
FalI	AAGNNNNNCTT	3 cut(s)	30, 213, 245
FaqI	GGGAC	2 cut(s)	497, 619
FatI	CATG	5 cut(s)	33, 214, 596, 645, 657
Fnu4HI	GCNGC	6 cut(s)	19, 129, 145, 157, 279, 706
Fsp4HI	GCNGC	6 cut(s)	19, 129, 145, 157, 279, 706
FspBI	CTAG	3 cut(s)	74, 123, 254
GluI	GCNGC	6 cut(s)	19, 129, 145, 157, 279, 706
HaeIII	GGCC	1 cut(s)	561
HgaI	GACGC	1 cut(s)	621
Hin1II	CATG	5 cut(s)	37, 218, 600, 649, 661
HindIII	AAGCTT	3 cut(s)	239, 344, 793
HinfI	GANTC	1 cut(s)	571
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	2 cut(s)	185, 406
Hpy188III	TCNNGA	2 cut(s)	313, 575
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	2 cut(s)	95, 149
HpyCH4III	ACNGT	2 cut(s)	98, 679
HpyCH4IV	ACGT	1 cut(s)	744
HpyCH4V	TGCA	2 cut(s)	525, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 255, 711
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	1 cut(s)	744
Hsp92II	CATG	5 cut(s)	37, 218, 600, 649, 661
Kzo9I	GATC	7 cut(s)	8, 113, 190, 309, 364, 384, 585
Lsp1109I	GCAGC	4 cut(s)	5, 131, 143, 717
MaeI	CTAG	3 cut(s)	74, 123, 254
MaeII	ACGT	1 cut(s)	744
MaeIII	GTNAC	2 cut(s)	451, 740
MalI	GATC	7 cut(s)	10, 115, 192, 311, 366, 386, 587
MboI	GATC	7 cut(s)	8, 113, 190, 309, 364, 384, 585
MflI	RGATCY	1 cut(s)	8
MluCI	AATT	3 cut(s)	399, 429, 777
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	6 cut(s)	194, 260, 333, 374, 385, 457
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	153, 255, 711
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	7 cut(s)	8, 113, 190, 309, 364, 384, 585
NlaIII	CATG	5 cut(s)	37, 218, 600, 649, 661
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	1 cut(s)	451
NspV	TTCGAA	2 cut(s)	508, 790
PfeI	GAWTC	1 cut(s)	571
PkrI	GCNGC	6 cut(s)	20, 130, 146, 158, 280, 707
Psp1406I	AACGTT	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	3 cut(s)	424, 484, 560
PsuI	RGATCY	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	6 cut(s)	19, 129, 145, 157, 279, 706
Sau3AI	GATC	7 cut(s)	8, 113, 190, 309, 364, 384, 585
Sau96I	GGNCC	3 cut(s)	424, 484, 560
ScrFI	CCNGG	1 cut(s)	291
SfuI	TTCGAA	2 cut(s)	508, 790
SinI	GGWCC	2 cut(s)	424, 484
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	3 cut(s)	399, 429, 777
SsiI	CCGC	3 cut(s)	129, 147, 278
SspMI	CTAG	3 cut(s)	74, 123, 254
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	253, 596
TaaI	ACNGT	2 cut(s)	98, 679
TaiI	ACGT	1 cut(s)	747
TaqI	TCGA	2 cut(s)	508, 790
TasI	AATT	3 cut(s)	399, 429, 777
TauI	GCSGC	2 cut(s)	131, 281
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	4 cut(s)	18, 144, 156, 705
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	4 cut(s)	50, 233, 234, 240
TspRI	CASTG	1 cut(s)	634
VpaK11BI	GGWCC	2 cut(s)	424, 484
XapI	RAATTY	2 cut(s)	399, 777
XmaJI	CCTAGG	1 cut(s)	253
XspI	CTAG	3 cut(s)	74, 123, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.