Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020825

Physical Location & Seq

Genomic Coordinates Reverse (-)

16661101 .. 16662549

Gene Structure 1449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGAAGGTCTCCTTGCTGTGAGAAAGACCACACAAACAAAGGAGCTTGGACTAAGGAAGAAGACGATAAGCTCATCTCTTACATCAAAGCTCACGGTGAAGGTTGTTGGCGTTCTCTTCCTAGATCCGCCGGTCTTCAACGTTGCGGAAAAAGCTGTCGTCTCCGATGGATTAACTATCTCCGACCTGATCTCAAGAGGGGTAACTTCACCCTCGAAGAAGATGATCTCATCATCAAACTACATAGCCTTCTCGGTAACAAGTGGTCTCTTATTGCGACGAGATTACCAGGAAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAGAGGAAGCTATTAAGAAAAGGGATTGATCCGGCGACTCATCGACCTATCAACGAGACCAAAACTTCTCAAGATTCGTCTGATTCTAGTAAAACAGAGGACCCTCTTGTCAAGATTCTCTCTTTTGGTCCTCAGCTGGAGAAAATAGCAAATTTCGGGGACGAGAGAATTCAAAAGAGAGTTGAGTACTCAGTTGTTGAAGAAAGATGTCTGGACTTGAATCTTGAGCTTAGGATCAGTCCACCATGGCAAGACAAGCTCCATGATGAGAGGAACCTAAGGTTTGGGAGAGTGAAGTATAGGTGCAGTGCGTGCCGTTTTGGATTCGGGAACGGCAAGGAGTGTAGCTGTAATAATGTGAAATGTCAAACAGAGGACAGTAGTAGCAGCAGTTATTCTTCAACCGACATTAGTAGTAGCATTGGTTATGACTTCTTGGGTCTAAACAACACTAGGGTTTTGGATTTTAGCACTTTGGAAATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009962 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0046686 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900376 GO:1900377 GO:1900384 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

274

Amino Acids

31.46

Weight (kDa)

8.89

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	1.2e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 120	2e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16720 AT4G34990
prunus_persica	Prupe.6G270000_v2.0.a1
rosa_multiflora	Rmu_sc0004237.1_g000002
rosa_samantha	Rh7DG398900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	443
AciI	CCGC	2 cut(s)	129, 147
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	3 cut(s)	120, 359, 578
AcsI	RAATTY	2 cut(s)	487, 504
AfaI	GTAC	1 cut(s)	524
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	140, 509, 536, 556, 738
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	9 cut(s)	47, 73, 92, 156, 346, 472, 565, 595, 684
AluI	AGCT	9 cut(s)	47, 73, 92, 156, 346, 472, 565, 595, 684
Alw26I	GTCTC	4 cut(s)	15, 167, 273, 386
AlwI	GGATC	3 cut(s)	120, 359, 578
ApeKI	GCWGC	1 cut(s)	723
ApoI	RAATTY	2 cut(s)	487, 504
AspS9I	GGNCC	2 cut(s)	436, 464
AsuHPI	GGTGA	2 cut(s)	110, 202
AvaII	GGWCC	2 cut(s)	436, 464
AxyI	CCTNAGG	1 cut(s)	614
BbsI	GAAGAC	2 cut(s)	69, 128
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	735
BccI	CCATC	1 cut(s)	162
BceAI	ACGGC	2 cut(s)	636, 685
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	4 cut(s)	15, 167, 273, 386
BfaI	CTAG	3 cut(s)	123, 423, 789
BisI	GCNGC	1 cut(s)	724
BlsI	GCNGC	1 cut(s)	725
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	436, 464
BmgT120I	GGNCC	2 cut(s)	436, 464
BmiI	GGNNCC	2 cut(s)	438, 611
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	69, 128
BpmI	CTGGAG	1 cut(s)	494
Bpu10I	CCTNAGC	2 cut(s)	468, 566
BpuEI	CTTGAG	3 cut(s)	179, 390, 581
BsaI	GGTCTC	3 cut(s)	15, 273, 386
BsaJI	CCNNGG	1 cut(s)	581
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	581
BseMII	CTCAG	2 cut(s)	482, 540
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	735
BsgI	GTGCAG	1 cut(s)	661
BsiSI	CCGG	2 cut(s)	132, 368
BslFI	GGGAC	1 cut(s)	509
BsmAI	GTCTC	4 cut(s)	15, 167, 273, 386
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	509
Bso31I	GGTCTC	3 cut(s)	15, 273, 386
Bsp143I	GATC	5 cut(s)	125, 190, 226, 364, 570
Bsp19I	CCATGG	1 cut(s)	581
BspACI	CCGC	2 cut(s)	129, 147
BspCNI	CTCAG	2 cut(s)	481, 539
BspLI	GGNNCC	2 cut(s)	438, 611
BspPI	GGATC	3 cut(s)	120, 359, 578
BspTNI	GGTCTC	3 cut(s)	15, 273, 386
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	581
BssMI	GATC	5 cut(s)	125, 190, 226, 364, 570
BssT1I	CCWWGG	1 cut(s)	581
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	98, 716
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	649
BstDEI	CTNAG	5 cut(s)	54, 468, 526, 566, 614
BstDSI	CCRYGG	1 cut(s)	581
BstKTI	GATC	5 cut(s)	128, 193, 229, 367, 573
BstMAI	GTCTC	4 cut(s)	15, 167, 273, 386
BstMBI	GATC	5 cut(s)	125, 190, 226, 364, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 592, 648
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	735
BstV2I	GAAGAC	2 cut(s)	69, 128
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
Bsu36I	CCTNAGG	1 cut(s)	614
BtgI	CCRYGG	1 cut(s)	581
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	649
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	436, 464
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	3 cut(s)	332, 582, 599
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	5 cut(s)	54, 468, 526, 566, 614
DpnI	GATC	5 cut(s)	127, 192, 228, 366, 572
DpnII	GATC	5 cut(s)	125, 190, 226, 364, 570
DrdI	GACNNNNNNGTC	1 cut(s)	443
DseDI	GACNNNNNNGTC	1 cut(s)	443
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	581
Eco31I	GGTCTC	3 cut(s)	15, 273, 386
Eco47I	GGWCC	2 cut(s)	436, 464
Eco81I	CCTNAGG	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	581
ErhI	CCWWGG	1 cut(s)	581
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	3 cut(s)	335, 585, 602
FaiI	YATR	6 cut(s)	246, 333, 583, 600, 636, 765
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	3 cut(s)	331, 581, 598
Fnu4HI	GCNGC	1 cut(s)	724
Fsp4HI	GCNGC	1 cut(s)	724
FspBI	CTAG	3 cut(s)	123, 423, 789
GluI	GCNGC	1 cut(s)	724
GsuI	CTGGAG	1 cut(s)	494
HapII	CCGG	2 cut(s)	132, 368
Hin1II	CATG	3 cut(s)	335, 585, 602
HinfI	GANTC	6 cut(s)	373, 410, 419, 451, 556, 660
HpaII	CCGG	2 cut(s)	132, 368
HphI	GGTGA	2 cut(s)	110, 202
Hpy166II	GTNNAC	1 cut(s)	578
Hpy188I	TCNGA	3 cut(s)	167, 185, 418
Hpy188III	TCNNGA	6 cut(s)	196, 407, 448, 548, 560, 664
Hpy8I	GTNNAC	1 cut(s)	578
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	95, 260
HpyCH4III	ACNGT	2 cut(s)	98, 716
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 592, 648
HpyF3I	CTNAG	5 cut(s)	54, 468, 526, 566, 614
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	3 cut(s)	335, 585, 602
Kzo9I	GATC	5 cut(s)	125, 190, 226, 364, 570
LmnI	GCTCC	2 cut(s)	44, 600
LpnPI	CCDG	8 cut(s)	145, 201, 276, 303, 307, 381, 458, 533
Lsp1109I	GCAGC	1 cut(s)	735
MaeI	CTAG	3 cut(s)	123, 423, 789
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	2 cut(s)	203, 257
MalI	GATC	5 cut(s)	127, 192, 228, 366, 572
MboI	GATC	5 cut(s)	125, 190, 226, 364, 570
MboII	GAAGA	9 cut(s)	71, 74, 110, 128, 230, 233, 306, 548, 726
MflI	RGATCY	1 cut(s)	125
MluCI	AATT	3 cut(s)	316, 487, 504
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	8 cut(s)	192, 224, 333, 427, 450, 477, 600, 703
MseI	TTAA	4 cut(s)	174, 312, 336, 350
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	2 cut(s)	132, 368
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	153, 592, 648
NcoI	CCATGG	1 cut(s)	581
NdeII	GATC	5 cut(s)	125, 190, 226, 364, 570
NlaIII	CATG	3 cut(s)	335, 585, 602
NlaIV	GGNNCC	2 cut(s)	438, 611
NspI	RCATGY	1 cut(s)	335
PciI	ACATGT	1 cut(s)	331
PfeI	GAWTC	5 cut(s)	410, 419, 451, 556, 660
PkrI	GCNGC	1 cut(s)	725
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	436
PscI	ACATGT	1 cut(s)	331
Psp1406I	AACGTT	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	438, 611
PspPI	GGNCC	2 cut(s)	436, 464
PspPPI	RGGWCCY	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SaqAI	TTAA	4 cut(s)	174, 312, 336, 350
SatI	GCNGC	1 cut(s)	724
Sau3AI	GATC	5 cut(s)	125, 190, 226, 364, 570
Sau96I	GGNCC	2 cut(s)	436, 464
ScaI	AGTACT	1 cut(s)	524
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	436, 464
SmlI	CTYRAG	3 cut(s)	194, 405, 560
SmoI	CTYRAG	3 cut(s)	194, 405, 560
Sse9I	AATT	3 cut(s)	316, 487, 504
SsiI	CCGC	2 cut(s)	129, 147
SspMI	CTAG	3 cut(s)	123, 423, 789
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	2 cut(s)	98, 716
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	216, 379
TasI	AATT	3 cut(s)	316, 487, 504
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	5 cut(s)	410, 419, 451, 556, 660
Tru1I	TTAA	4 cut(s)	174, 312, 336, 350
Tru9I	TTAA	4 cut(s)	174, 312, 336, 350
TscAI	CASTG	1 cut(s)	649
TseI	GCWGC	1 cut(s)	723
TspRI	CASTG	1 cut(s)	649
VpaK11BI	GGWCC	2 cut(s)	436, 464
XapI	RAATTY	2 cut(s)	487, 504
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	3 cut(s)	123, 423, 789
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.