ubiquitin modification-dependent histone binding
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g10090 |
| rosa_roxburghii | Rroxscaffold_2G00145240 |
| rosa_samantha | Rh2DG112400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 62 |
| AcsI | RAATTY | 1 cut(s) | 189 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 51 |
| AgsI | TTSAA | 1 cut(s) | 184 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 81 |
| AlwI | GGATC | 1 cut(s) | 62 |
| ApoI | RAATTY | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 325 |
| AspS9I | GGNCC | 1 cut(s) | 254 |
| AsuHPI | GGTGA | 1 cut(s) | 228 |
| AvaII | GGWCC | 1 cut(s) | 254 |
| BbsI | GAAGAC | 2 cut(s) | 143, 149 |
| BccI | CCATC | 3 cut(s) | 112, 247, 265 |
| BfmI | CTRYAG | 1 cut(s) | 171 |
| BfoI | RGCGCY | 1 cut(s) | 326 |
| Bme18I | GGWCC | 1 cut(s) | 254 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 81 |
| BmgT120I | GGNCC | 1 cut(s) | 254 |
| BmiI | GGNNCC | 1 cut(s) | 12 |
| BmsI | GCATC | 1 cut(s) | 324 |
| BpiI | GAAGAC | 2 cut(s) | 143, 149 |
| BpmI | CTGGAG | 1 cut(s) | 130 |
| Bpu10I | CCTNAGC | 1 cut(s) | 150 |
| BpuEI | CTTGAG | 1 cut(s) | 79 |
| BsaAI | YACGTR | 1 cut(s) | 209 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 130, 160 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 51 |
| Bse1I | ACTGG | 2 cut(s) | 81, 113 |
| BseGI | GGATG | 1 cut(s) | 239 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 51 |
| BseMII | CTCAG | 1 cut(s) | 141 |
| BseNI | ACTGG | 2 cut(s) | 81, 113 |
| BseRI | GAGGAG | 2 cut(s) | 282, 344 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 51 |
| Bsp143I | GATC | 2 cut(s) | 54, 296 |
| BspCNI | CTCAG | 1 cut(s) | 142 |
| BspLI | GGNNCC | 1 cut(s) | 12 |
| BspMAI | CTGCAG | 1 cut(s) | 175 |
| BspPI | GGATC | 1 cut(s) | 62 |
| BsrI | ACTGG | 2 cut(s) | 81, 113 |
| BssMI | GATC | 2 cut(s) | 54, 296 |
| BstBAI | YACGTR | 1 cut(s) | 209 |
| BstDEI | CTNAG | 2 cut(s) | 35, 150 |
| BstF5I | GGATG | 1 cut(s) | 239 |
| BstH2I | RGCGCY | 1 cut(s) | 326 |
| BstHHI | GCGC | 1 cut(s) | 325 |
| BstKTI | GATC | 2 cut(s) | 57, 299 |
| BstMBI | GATC | 2 cut(s) | 54, 296 |
| BstSFI | CTRYAG | 1 cut(s) | 171 |
| BstV2I | GAAGAC | 2 cut(s) | 143, 149 |
| BstX2I | RGATCY | 1 cut(s) | 54 |
| BstYI | RGATCY | 1 cut(s) | 54 |
| BtsCI | GGATG | 1 cut(s) | 239 |
| CfoI | GCGC | 1 cut(s) | 325 |
| Cfr13I | GGNCC | 1 cut(s) | 254 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 232, 267 |
| CviAII | CATG | 2 cut(s) | 100, 300 |
| DdeI | CTNAG | 2 cut(s) | 35, 150 |
| DpnI | GATC | 2 cut(s) | 56, 298 |
| DpnII | GATC | 2 cut(s) | 54, 296 |
| DraI | TTTAAA | 1 cut(s) | 90 |
| DriI | GACNNNNNGTC | 1 cut(s) | 81 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 81 |
| Eco47I | GGWCC | 1 cut(s) | 254 |
| EcoRI | GAATTC | 1 cut(s) | 189 |
| FaeI | CATG | 2 cut(s) | 103, 303 |
| FaiI | YATR | 7 cut(s) | 22, 101, 116, 160, 162, 266, 301 |
| FatI | CATG | 2 cut(s) | 99, 299 |
| FokI | GGATG | 1 cut(s) | 226 |
| GlaI | GCGC | 1 cut(s) | 324 |
| GsuI | CTGGAG | 1 cut(s) | 130 |
| HaeII | RGCGCY | 1 cut(s) | 326 |
| HhaI | GCGC | 1 cut(s) | 325 |
| Hin1II | CATG | 2 cut(s) | 103, 303 |
| Hin6I | GCGC | 1 cut(s) | 323 |
| HinP1I | GCGC | 1 cut(s) | 323 |
| HinfI | GANTC | 3 cut(s) | 39, 145, 233 |
| HphI | GGTGA | 1 cut(s) | 228 |
| Hpy188III | TCNNGA | 3 cut(s) | 8, 58, 149 |
| HpyCH4IV | ACGT | 1 cut(s) | 208 |
| HpyCH4V | TGCA | 2 cut(s) | 173, 303 |
| HpyF3I | CTNAG | 2 cut(s) | 35, 150 |
| HpySE526I | ACGT | 1 cut(s) | 208 |
| Hsp92II | CATG | 2 cut(s) | 103, 303 |
| HspAI | GCGC | 1 cut(s) | 323 |
| Kzo9I | GATC | 2 cut(s) | 54, 296 |
| LmnI | GCTCC | 1 cut(s) | 295 |
| LpnPI | CCDG | 5 cut(s) | 13, 94, 94, 162, 325 |
| LweI | GCATC | 1 cut(s) | 324 |
| MaeII | ACGT | 1 cut(s) | 208 |
| MalI | GATC | 2 cut(s) | 56, 298 |
| MboI | GATC | 2 cut(s) | 54, 296 |
| MboII | GAAGA | 2 cut(s) | 148, 154 |
| MfeI | CAATTG | 1 cut(s) | 249 |
| MflI | RGATCY | 1 cut(s) | 54 |
| MluCI | AATT | 2 cut(s) | 189, 249 |
| MlyI | GAGTC | 2 cut(s) | 33, 139 |
| MnlI | CCTC | 3 cut(s) | 303, 322, 325 |
| MseI | TTAA | 2 cut(s) | 89, 225 |
| MunI | CAATTG | 1 cut(s) | 249 |
| NdeII | GATC | 2 cut(s) | 54, 296 |
| NlaIII | CATG | 2 cut(s) | 103, 303 |
| NlaIV | GGNNCC | 1 cut(s) | 12 |
| PfeI | GAWTC | 1 cut(s) | 233 |
| PleI | GAGTC | 2 cut(s) | 33, 139 |
| PpsI | GAGTC | 2 cut(s) | 33, 139 |
| Ppu21I | YACGTR | 1 cut(s) | 209 |
| PspN4I | GGNNCC | 1 cut(s) | 12 |
| PspPI | GGNCC | 1 cut(s) | 254 |
| PstI | CTGCAG | 1 cut(s) | 175 |
| PsuI | RGATCY | 1 cut(s) | 54 |
| SaqAI | TTAA | 2 cut(s) | 89, 225 |
| Sau3AI | GATC | 2 cut(s) | 54, 296 |
| Sau96I | GGNCC | 1 cut(s) | 254 |
| SchI | GAGTC | 2 cut(s) | 33, 139 |
| SetI | ASST | 2 cut(s) | 211, 336 |
| SfaNI | GCATC | 1 cut(s) | 324 |
| SfcI | CTRYAG | 1 cut(s) | 171 |
| SinI | GGWCC | 1 cut(s) | 254 |
| SmlI | CTYRAG | 2 cut(s) | 58, 326 |
| SmoI | CTYRAG | 2 cut(s) | 58, 326 |
| Sse9I | AATT | 2 cut(s) | 189, 249 |
| SspI | AATATT | 1 cut(s) | 179 |
| TaiI | ACGT | 1 cut(s) | 211 |
| TaqI | TCGA | 2 cut(s) | 260, 295 |
| TasI | AATT | 2 cut(s) | 189, 249 |
| TfiI | GAWTC | 1 cut(s) | 233 |
| Tru1I | TTAA | 2 cut(s) | 89, 225 |
| Tru9I | TTAA | 2 cut(s) | 89, 225 |
| TspDTI | ATGAA | 1 cut(s) | 284 |
| VpaK11BI | GGWCC | 1 cut(s) | 254 |
| XapI | RAATTY | 1 cut(s) | 189 |