Rroxscaffold_2G00145240
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0023978
Physical Location & Seq
Forward (+)
83133246 .. 83133999
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00145240.1

Sequence Viewer

Length: 366 bp
ATGGGTCTGGAACCGAATACATGCAGCAGGGTGGTCAGACTCCCCCCGTTTTGGATCCTGATCGAGTGGACAGAGAAAGACCACTACCACCTATTCGTGGAAGGTCTTTCAAAGTGTGGCATGGGCAACTGGAGAATGATGGCAGAGAAGTTTGTGAAGACGAAGACTCCTGAGCAGATATATGACTATTCTGCAGAATATTTCAGGCGAATTCGCTCTACAAGCTTACGTGCCACTTGCTACAGATTCACCATCCACATCAATTGGTCCATCGAACATTCGAACATAATGGATATCGTGGTCAATGTTGCTCCTCGATCATGCGAAAAATCCAGCATCAAGGCGCCTGAGGAGGCTGGTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

121

Amino Acids

14.2

Weight (kDa)

8.38

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023978)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10090
rosa_roxburghii Rroxscaffold_2G00145240
rosa_samantha Rh2DG112400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AclWI GGATC 2 cut(s) 49, 62
AcsI RAATTY 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 51, 97
AgsI TTSAA 1 cut(s) 111
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
AlwI GGATC 2 cut(s) 49, 62
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 210
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 267
AxyI CCTNAGG 1 cut(s) 348
BamHI GGATCC 1 cut(s) 54
BanI GGYRCC 1 cut(s) 343
BbsI GAAGAC 2 cut(s) 164, 170
BbvI GCAGC 1 cut(s) 36
BccI CCATC 3 cut(s) 133, 260, 278
BfmI CTRYAG 2 cut(s) 192, 241
BfoI RGCGCY 1 cut(s) 347
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 3 cut(s) 12, 56, 345
BmsI GCATC 1 cut(s) 345
BpiI GAAGAC 2 cut(s) 164, 170
BpmI CTGGAG 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 344
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 97
Bse1I ACTGG 1 cut(s) 134
Bse21I CCTNAGG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 59
BseGI GGATG 1 cut(s) 252
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 2 cut(s) 51, 97
BseMII CTCAG 2 cut(s) 162, 339
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 2 cut(s) 303, 365
BseXI GCAGC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 343
BslI CCNNNNNNNGG 2 cut(s) 51, 97
Bsp119I TTCGAA 1 cut(s) 281
Bsp143I GATC 3 cut(s) 54, 60, 317
BspCNI CTCAG 2 cut(s) 163, 340
BspLI GGNNCC 3 cut(s) 12, 56, 345
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 2 cut(s) 49, 62
BspT104I TTCGAA 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 343
BsrI ACTGG 1 cut(s) 134
BssMI GATC 3 cut(s) 54, 60, 317
BssNI GRCGYC 1 cut(s) 344
BstACI GRCGYC 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 171, 348
BstF5I GGATG 1 cut(s) 252
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 3 cut(s) 57, 63, 320
BstMBI GATC 3 cut(s) 54, 60, 317
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 24
BstSFI CTRYAG 2 cut(s) 192, 241
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 2 cut(s) 164, 170
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
Bsu36I CCTNAGG 1 cut(s) 348
BtsCI GGATG 1 cut(s) 252
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 267
CspCI CAANNNNNGTGG 2 cut(s) 245, 280
CviAII CATG 3 cut(s) 21, 121, 321
CviJI RGCY 2 cut(s) 225, 356
CviKI_1 RGCY 2 cut(s) 225, 356
DdeI CTNAG 2 cut(s) 171, 348
DinI GGCGCC 1 cut(s) 345
DpnI GATC 3 cut(s) 56, 62, 319
DpnII GATC 3 cut(s) 54, 60, 317
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 267
Eco81I CCTNAGG 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 210
EcoRV GATATC 1 cut(s) 295
EgeI GGCGCC 1 cut(s) 345
EheI GGCGCC 1 cut(s) 345
FaeI CATG 3 cut(s) 24, 124, 324
FaiI YATR 6 cut(s) 22, 122, 181, 183, 287, 322
FatI CATG 3 cut(s) 20, 120, 320
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 25
GlaI GCGC 1 cut(s) 345
GluI GCNGC 1 cut(s) 25
GsuI CTGGAG 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 347
HhaI GCGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 3 cut(s) 24, 124, 324
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HindIII AAGCTT 1 cut(s) 223
HinfI GANTC 3 cut(s) 39, 166, 246
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 8, 58, 170
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 24, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 171, 348
HpySE526I ACGT 1 cut(s) 229
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 3 cut(s) 24, 124, 324
HspAI GCGC 1 cut(s) 344
KasI GGCGCC 1 cut(s) 343
Kzo9I GATC 3 cut(s) 54, 60, 317
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 8 cut(s) 13, 71, 115, 183, 190, 342, 346, 360
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 345
MaeII ACGT 1 cut(s) 229
MalI GATC 3 cut(s) 56, 62, 319
MboI GATC 3 cut(s) 54, 60, 317
MboII GAAGA 2 cut(s) 169, 175
MfeI CAATTG 1 cut(s) 262
MflI RGATCY 1 cut(s) 54
MluCI AATT 2 cut(s) 210, 262
Mly113I GGCGCC 1 cut(s) 344
MlyI GAGTC 2 cut(s) 33, 160
MnlI CCTC 3 cut(s) 324, 343, 346
MunI CAATTG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 222
NarI GGCGCC 1 cut(s) 344
NdeII GATC 3 cut(s) 54, 60, 317
NlaIII CATG 3 cut(s) 24, 124, 324
NlaIV GGNNCC 3 cut(s) 12, 56, 345
NspI RCATGY 1 cut(s) 24
NspV TTCGAA 1 cut(s) 281
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 2 cut(s) 33, 160
PluTI GGCGCC 1 cut(s) 347
PpsI GAGTC 2 cut(s) 33, 160
Ppu21I YACGTR 1 cut(s) 230
PspN4I GGNNCC 3 cut(s) 12, 56, 345
PspPI GGNCC 1 cut(s) 267
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 54
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 3 cut(s) 54, 60, 317
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 2 cut(s) 33, 160
SetI ASST 4 cut(s) 93, 106, 227, 232
SfaNI GCATC 1 cut(s) 345
SfcI CTRYAG 2 cut(s) 192, 241
SfoI GGCGCC 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 281
SinI GGWCC 1 cut(s) 267
Sse9I AATT 2 cut(s) 210, 262
SspDI GGCGCC 1 cut(s) 343
SspI AATATT 1 cut(s) 200
TaiI ACGT 1 cut(s) 232
TaqI TCGA 4 cut(s) 63, 273, 281, 316
TasI AATT 2 cut(s) 210, 262
TfiI GAWTC 1 cut(s) 246
TseI GCWGC 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 210
XceI RCATGY 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.